Wall clock time and date at job start Wed Apr 1 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34259 * 126.52541 * 2 1 4 4 C 1.34048 * 108.22891 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37957 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49567 * 8.62408 * 5 4 3 7 7 C 1.53001 * 60.00057 * 252.51208 * 6 5 4 8 8 N 1.29930 * 109.24000 * 0.02562 * 4 3 2 9 9 C 1.36063 * 108.48099 * 359.97438 * 8 4 3 10 10 C 1.47428 * 126.45021 * 179.73668 * 9 8 4 11 11 O 1.21610 * 119.99670 * 186.76202 * 10 9 8 12 12 N 1.34778 * 119.99680 * 6.76592 * 10 9 8 13 13 C 1.46922 * 120.63217 * 6.36881 * 12 10 9 14 14 C 1.53622 * 108.54191 * 126.37125 * 13 12 10 15 15 C 1.53044 * 109.24049 * 54.85786 * 14 13 12 16 16 H 1.09003 * 109.45810 * 178.49312 * 15 14 13 17 17 C 1.52997 * 109.44942 * 58.52547 * 15 14 13 18 18 C 1.53044 * 109.53776 * 298.51020 * 15 14 13 19 19 H 1.09001 * 109.50023 * 301.41468 * 18 15 14 20 20 C 1.53002 * 109.52371 * 181.33134 * 18 15 14 21 21 N 1.46503 * 109.46891 * 175.14558 * 20 18 15 22 22 C 1.36931 * 119.99706 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00265 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00139 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00140 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99581 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46994 * 89.99842 * 26 24 22 28 28 H 1.48497 * 109.47002 * 209.99417 * 26 24 22 29 29 H 1.48497 * 109.47418 * 329.99982 * 26 24 22 30 30 C 1.46920 * 120.62581 * 186.65675 * 12 10 9 31 31 H 1.08998 * 109.47322 * 269.95884 * 1 2 3 32 32 H 1.09005 * 109.46841 * 29.96158 * 1 2 3 33 33 H 1.09000 * 109.46375 * 149.95697 * 1 2 3 34 34 H 1.08997 * 115.55387 * 154.33113 * 5 4 3 35 35 H 1.08991 * 117.50211 * 359.97438 * 6 5 4 36 36 H 1.09001 * 117.49325 * 145.02684 * 6 5 4 37 37 H 1.09005 * 117.50226 * 252.51816 * 7 6 5 38 38 H 1.08997 * 117.50305 * 107.48992 * 7 6 5 39 39 H 1.09001 * 109.59003 * 246.20766 * 13 12 10 40 40 H 1.09005 * 109.58581 * 6.63073 * 13 12 10 41 41 H 1.09006 * 109.63500 * 294.86915 * 14 13 12 42 42 H 1.08998 * 109.46369 * 174.74148 * 14 13 12 43 43 H 1.09001 * 109.46941 * 299.93774 * 17 15 14 44 44 H 1.09000 * 109.46868 * 59.93676 * 17 15 14 45 45 H 1.09002 * 109.47019 * 179.97438 * 17 15 14 46 46 H 1.08992 * 109.47335 * 295.14732 * 20 18 15 47 47 H 1.09000 * 109.46785 * 55.14612 * 20 18 15 48 48 H 0.96994 * 119.99832 * 0.02562 * 21 20 18 49 49 H 0.97004 * 119.99573 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.59396 * 353.36849 * 30 12 10 51 51 H 1.09002 * 109.59087 * 113.79541 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5789 0.6581 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.5674 3.0503 0.2021 7 6 4.9595 2.5158 -1.1769 8 7 3.6002 -0.6411 -0.0015 9 6 2.3171 -1.0935 -0.0009 10 6 1.8854 -2.5032 -0.0071 11 8 0.7071 -2.7777 -0.1299 12 7 2.7967 -3.4876 0.1235 13 6 4.2026 -3.1728 0.4117 14 6 4.6358 -3.9652 1.6544 15 6 4.3594 -5.4529 1.4255 16 1 4.6902 -6.0216 2.2946 17 6 5.1202 -5.9277 0.1860 18 6 2.8587 -5.6684 1.2163 19 1 2.3142 -5.3074 2.0888 20 6 2.5787 -7.1598 1.0206 21 7 1.1325 -7.3781 0.9363 22 6 0.6403 -8.6438 0.7606 23 1 1.3182 -9.4812 0.6847 24 6 -0.7301 -8.8508 0.6813 25 7 -1.2032 -10.0673 0.5119 26 14 -1.9026 -7.4026 0.8134 27 1 -2.1586 -6.8480 -0.5402 28 1 -3.1833 -7.8557 1.4130 29 1 -1.2979 -6.3528 1.6722 30 6 2.4043 -4.8955 -0.0258 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3633 0.8904 -0.5133 33 1 -0.3632 -0.8896 -0.5145 34 1 5.6970 1.1152 0.4243 35 1 3.5408 3.3912 0.3360 36 1 5.3231 3.6016 0.7617 37 1 5.9732 2.7153 -1.5244 38 1 4.1910 2.5050 -1.9497 39 1 4.8222 -3.4551 -0.4395 40 1 4.3060 -2.1047 0.6032 41 1 4.0745 -3.6202 2.5228 42 1 5.7016 -3.8156 1.8272 43 1 4.7892 -5.3594 -0.6833 44 1 6.1890 -5.7743 0.3348 45 1 4.9239 -6.9874 0.0229 46 1 3.0519 -7.5006 0.0998 47 1 2.9820 -7.7190 1.8648 48 1 0.5237 -6.6261 1.0049 49 1 -2.1607 -10.2118 0.4561 50 1 1.3208 -4.9646 -0.1230 51 1 2.8802 -5.3155 -0.9119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133205322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:50 Heat of formation + Delta-G solvation = 35.012033 kcal Electronic energy + Delta-G solvation = -31595.370475 eV Core-core repulsion = 27498.041931 eV Total energy + Delta-G solvation = -4097.328544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.81127 -40.25017 -38.16965 -37.71026 -35.47832 -34.80505 -33.46968 -32.52582 -31.82494 -30.18142 -28.29613 -27.51386 -26.01790 -25.02985 -23.91837 -23.14176 -22.91832 -22.72033 -21.50340 -21.03613 -19.63592 -18.47333 -17.48418 -17.37130 -17.17994 -16.94615 -15.92736 -15.82129 -15.18695 -14.99732 -14.92035 -14.84529 -14.20231 -14.01458 -13.62483 -13.54406 -13.46056 -13.27010 -13.09320 -12.93021 -12.72305 -12.62340 -12.41190 -12.17751 -12.13588 -11.86135 -11.67243 -11.47686 -11.20147 -11.19559 -11.10881 -11.06798 -10.80791 -10.72096 -10.44148 -10.21571 -10.10609 -10.01919 -9.63661 -9.48533 -9.01022 -8.81120 -8.41879 -7.14709 -5.69627 -3.04582 0.82077 1.63249 2.06937 2.92634 3.13027 3.20678 3.44847 3.48219 3.53514 3.55986 4.10776 4.26234 4.28982 4.38372 4.59118 4.68384 4.82040 4.86222 4.94091 4.95852 5.03213 5.11553 5.17420 5.20805 5.24512 5.36692 5.40473 5.44485 5.47686 5.53764 5.57204 5.61304 5.63730 5.72776 5.76374 5.81631 5.86026 5.94138 6.00670 6.09059 6.20879 6.28308 6.34578 6.37285 6.50177 6.67684 6.74798 6.86040 7.15623 7.48625 8.06526 8.14766 8.49488 9.28996 10.01974 10.21736 11.48687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.002931 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.418255 B = 9549.651516 C =11170.498057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 O -0.196 6.196 4 C 0.220 3.780 5 C -0.072 4.072 6 C -0.163 4.163 7 C -0.157 4.157 8 N -0.448 5.448 9 C -0.067 4.067 10 C 0.597 3.403 11 O -0.533 6.533 12 N -0.590 5.590 13 C 0.078 3.922 14 C -0.127 4.127 15 C -0.085 4.085 16 H 0.073 0.927 17 C -0.153 4.153 18 C -0.105 4.105 19 H 0.072 0.928 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.276 1.276 30 C 0.117 3.883 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.029 0.971 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.095 0.905 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.136 29.318 -0.831 33.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 O -0.083 6.083 4 C 0.013 3.987 5 C -0.091 4.091 6 C -0.200 4.200 7 C -0.195 4.195 8 N -0.177 5.177 9 C -0.186 4.186 10 C 0.384 3.616 11 O -0.410 6.410 12 N -0.321 5.321 13 C -0.044 4.044 14 C -0.165 4.165 15 C -0.104 4.104 16 H 0.092 0.908 17 C -0.210 4.210 18 C -0.125 4.125 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.403 5.403 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.584 5.584 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.202 1.202 30 C -0.004 4.004 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.195 0.805 49 H 0.069 0.931 50 H 0.114 0.886 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.033 28.542 -0.936 32.750 hybrid contribution -1.377 1.158 0.176 1.808 sum 14.656 29.700 -0.760 33.128 Atomic orbital electron populations 1.20665 0.82316 1.05712 1.04854 1.23746 0.95082 0.83035 0.99572 1.84271 1.17757 1.36367 1.69904 1.25120 0.83156 0.89823 1.00593 1.20283 0.92236 0.89532 1.07072 1.23127 1.04125 0.93071 0.99711 1.23151 1.04147 1.00487 0.91725 1.70504 1.21171 1.07933 1.18109 1.21533 0.88483 0.95689 1.12940 1.16780 0.85250 0.82444 0.77151 1.90810 1.16302 1.82739 1.51150 1.47913 1.09257 1.06319 1.68642 1.22740 0.80356 1.04165 0.97189 1.22018 1.01056 0.95402 0.98038 1.21079 0.94830 0.95540 0.98963 0.90830 1.21984 0.99161 1.02055 0.97758 1.21731 0.95493 0.97178 0.98071 0.90918 1.20666 0.86010 0.90839 0.98751 1.42787 1.01297 1.06544 1.89665 1.19045 0.91659 0.84724 1.41772 0.89240 1.24654 0.96524 0.95994 1.01942 1.69708 1.12580 1.19107 1.56958 0.86582 0.81203 0.82841 0.78191 1.20902 1.21814 1.20206 1.21807 1.02536 0.78049 0.98002 0.88931 0.90113 0.86471 0.83369 0.87814 0.87080 0.86968 0.88126 0.91602 0.84970 0.91999 0.90979 0.92460 0.93067 0.91740 0.95031 0.95286 0.80526 0.93145 0.88625 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.95 36.01 0.36 -0.42 16 2 C 0.04 0.50 7.44 -35.08 -0.26 0.24 16 3 O -0.20 -2.08 10.40 6.51 0.07 -2.02 16 4 C 0.22 2.21 7.80 -13.08 -0.10 2.11 16 5 C -0.07 -0.44 6.33 -91.77 -0.58 -1.02 16 6 C -0.16 -0.70 10.16 -26.73 -0.27 -0.97 16 7 C -0.16 -0.70 10.23 -26.73 -0.27 -0.98 16 8 N -0.45 -5.42 7.81 -7.66 -0.06 -5.48 16 9 C -0.07 -0.93 6.68 -83.02 -0.55 -1.48 16 10 C 0.60 9.79 7.68 -12.52 -0.10 9.69 16 11 O -0.53 -10.12 14.20 5.27 0.07 -10.04 16 12 N -0.59 -9.02 2.97 -173.77 -0.52 -9.53 16 13 C 0.08 0.96 5.68 -3.49 -0.02 0.94 16 14 C -0.13 -1.45 5.64 -26.39 -0.15 -1.60 16 15 C -0.09 -1.09 2.71 -90.58 -0.25 -1.34 16 16 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.15 -1.81 8.11 37.16 0.30 -1.51 16 18 C -0.11 -1.72 2.15 -90.50 -0.19 -1.92 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 21 N -0.76 -18.83 5.18 -59.91 -0.31 -19.14 16 22 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 23 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.94 -30.26 13.97 55.49 0.78 -29.49 16 26 Si 0.88 23.52 27.74 -169.99 -4.71 18.80 16 27 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 29 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 30 C 0.12 1.99 5.06 -3.71 -0.02 1.97 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 1.37 6.36 -51.93 -0.33 1.04 16 34 H 0.15 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.77 6.69 -51.93 -0.35 0.43 16 40 H 0.13 1.62 4.07 -62.28 -0.25 1.36 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.70 4.96 -51.93 -0.26 0.44 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 46 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.36 9.05 4.75 -40.82 -0.19 8.86 16 49 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 50 H 0.10 1.92 6.20 -51.93 -0.32 1.59 16 51 H 0.07 1.20 6.69 -51.93 -0.35 0.86 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -35.26 394.80 -8.93 -44.20 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.82 Total: 7.01 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.38 Total: -0.26 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.11 Total: -63.65 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.14 Total: -12.06 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.71 Total: 18.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.26 -8.93 -44.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.207 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds