Wall clock time and date at job start Wed Apr 1 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34259 * 126.52541 * 2 1 4 4 C 1.34048 * 108.22891 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37957 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49567 * 8.62408 * 5 4 3 7 7 C 1.53001 * 60.00057 * 252.51208 * 6 5 4 8 8 N 1.29930 * 109.24000 * 0.02562 * 4 3 2 9 9 C 1.36063 * 108.48099 * 359.97438 * 8 4 3 10 10 C 1.47428 * 126.45021 * 179.73668 * 9 8 4 11 11 O 1.21610 * 119.99670 * 186.76202 * 10 9 8 12 12 N 1.34778 * 119.99680 * 6.76592 * 10 9 8 13 13 C 1.46922 * 120.63217 * 6.36881 * 12 10 9 14 14 C 1.53622 * 108.54191 * 126.37125 * 13 12 10 15 15 C 1.53044 * 109.24049 * 54.85786 * 14 13 12 16 16 H 1.09003 * 109.45810 * 178.49312 * 15 14 13 17 17 C 1.52997 * 109.44942 * 58.52547 * 15 14 13 18 18 C 1.53044 * 109.53776 * 298.51020 * 15 14 13 19 19 H 1.09001 * 109.50023 * 301.41468 * 18 15 14 20 20 C 1.53002 * 109.52371 * 181.33134 * 18 15 14 21 21 N 1.46503 * 109.46891 * 175.14558 * 20 18 15 22 22 C 1.36931 * 119.99706 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00265 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00139 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00140 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99581 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46994 * 89.99842 * 26 24 22 28 28 H 1.48497 * 109.47002 * 209.99417 * 26 24 22 29 29 H 1.48497 * 109.47418 * 329.99982 * 26 24 22 30 30 C 1.46920 * 120.62581 * 186.65675 * 12 10 9 31 31 H 1.08998 * 109.47322 * 269.95884 * 1 2 3 32 32 H 1.09005 * 109.46841 * 29.96158 * 1 2 3 33 33 H 1.09000 * 109.46375 * 149.95697 * 1 2 3 34 34 H 1.08997 * 115.55387 * 154.33113 * 5 4 3 35 35 H 1.08991 * 117.50211 * 359.97438 * 6 5 4 36 36 H 1.09001 * 117.49325 * 145.02684 * 6 5 4 37 37 H 1.09005 * 117.50226 * 252.51816 * 7 6 5 38 38 H 1.08997 * 117.50305 * 107.48992 * 7 6 5 39 39 H 1.09001 * 109.59003 * 246.20766 * 13 12 10 40 40 H 1.09005 * 109.58581 * 6.63073 * 13 12 10 41 41 H 1.09006 * 109.63500 * 294.86915 * 14 13 12 42 42 H 1.08998 * 109.46369 * 174.74148 * 14 13 12 43 43 H 1.09001 * 109.46941 * 299.93774 * 17 15 14 44 44 H 1.09000 * 109.46868 * 59.93676 * 17 15 14 45 45 H 1.09002 * 109.47019 * 179.97438 * 17 15 14 46 46 H 1.08992 * 109.47335 * 295.14732 * 20 18 15 47 47 H 1.09000 * 109.46785 * 55.14612 * 20 18 15 48 48 H 0.96994 * 119.99832 * 0.02562 * 21 20 18 49 49 H 0.97004 * 119.99573 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.59396 * 353.36849 * 30 12 10 51 51 H 1.09002 * 109.59087 * 113.79541 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5789 0.6581 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.5674 3.0503 0.2021 7 6 4.9595 2.5158 -1.1769 8 7 3.6002 -0.6411 -0.0015 9 6 2.3171 -1.0935 -0.0009 10 6 1.8854 -2.5032 -0.0071 11 8 0.7071 -2.7777 -0.1299 12 7 2.7967 -3.4876 0.1235 13 6 4.2026 -3.1728 0.4117 14 6 4.6358 -3.9652 1.6544 15 6 4.3594 -5.4529 1.4255 16 1 4.6902 -6.0216 2.2946 17 6 5.1202 -5.9277 0.1860 18 6 2.8587 -5.6684 1.2163 19 1 2.3142 -5.3074 2.0888 20 6 2.5787 -7.1598 1.0206 21 7 1.1325 -7.3781 0.9363 22 6 0.6403 -8.6438 0.7606 23 1 1.3182 -9.4812 0.6847 24 6 -0.7301 -8.8508 0.6813 25 7 -1.2032 -10.0673 0.5119 26 14 -1.9026 -7.4026 0.8134 27 1 -2.1586 -6.8480 -0.5402 28 1 -3.1833 -7.8557 1.4130 29 1 -1.2979 -6.3528 1.6722 30 6 2.4043 -4.8955 -0.0258 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3633 0.8904 -0.5133 33 1 -0.3632 -0.8896 -0.5145 34 1 5.6970 1.1152 0.4243 35 1 3.5408 3.3912 0.3360 36 1 5.3231 3.6016 0.7617 37 1 5.9732 2.7153 -1.5244 38 1 4.1910 2.5050 -1.9497 39 1 4.8222 -3.4551 -0.4395 40 1 4.3060 -2.1047 0.6032 41 1 4.0745 -3.6202 2.5228 42 1 5.7016 -3.8156 1.8272 43 1 4.7892 -5.3594 -0.6833 44 1 6.1890 -5.7743 0.3348 45 1 4.9239 -6.9874 0.0229 46 1 3.0519 -7.5006 0.0998 47 1 2.9820 -7.7190 1.8648 48 1 0.5237 -6.6261 1.0049 49 1 -2.1607 -10.2118 0.4561 50 1 1.3208 -4.9646 -0.1230 51 1 2.8802 -5.3155 -0.9119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133205322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:49 Heat of formation + Delta-G solvation = 11.631683 kcal Electronic energy + Delta-G solvation = -31596.384324 eV Core-core repulsion = 27498.041931 eV Total energy + Delta-G solvation = -4098.342392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.66862 -41.45750 -39.39377 -38.15130 -36.88580 -36.12727 -34.79719 -33.70755 -33.34103 -31.87067 -29.22650 -28.64111 -27.43089 -26.16147 -24.81549 -24.63351 -23.78170 -23.27843 -22.61092 -22.37143 -20.76050 -19.85631 -19.20090 -18.41239 -18.13675 -17.67254 -17.10861 -16.81018 -16.57954 -16.30342 -16.05810 -15.94579 -15.48247 -15.34000 -14.97189 -14.73040 -14.65147 -14.51661 -14.26212 -14.10743 -13.88386 -13.72855 -13.46311 -13.34014 -13.06584 -13.00862 -12.70090 -12.66247 -12.50956 -12.44596 -12.20504 -12.13318 -11.88522 -11.87364 -11.77763 -11.62746 -11.54574 -11.40791 -11.32137 -11.01033 -10.68679 -9.92091 -9.56692 -9.31950 -8.06958 -5.38822 -0.10437 0.75489 1.27093 1.32704 1.35802 1.41389 1.80624 2.04391 2.42738 2.55593 2.89050 3.24855 3.35494 3.48079 3.50889 3.74755 3.79073 3.80642 3.94057 3.95607 4.04433 4.07103 4.10161 4.26069 4.30737 4.39226 4.47034 4.48229 4.51757 4.68550 4.71637 4.75119 4.75865 4.76988 4.85728 4.90615 4.95857 4.99943 5.04938 5.08350 5.12399 5.18845 5.20304 5.24043 5.26727 5.37367 5.52913 5.64471 5.72669 6.17791 6.18351 6.41360 6.93664 7.03459 7.80737 7.98041 9.14539 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.002931 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.418255 B = 9549.651516 C =11170.498057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 O -0.192 6.192 4 C 0.231 3.769 5 C -0.091 4.091 6 C -0.151 4.151 7 C -0.150 4.150 8 N -0.463 5.463 9 C -0.094 4.094 10 C 0.588 3.412 11 O -0.571 6.571 12 N -0.590 5.590 13 C 0.077 3.923 14 C -0.119 4.119 15 C -0.080 4.080 16 H 0.083 0.917 17 C -0.149 4.149 18 C -0.093 4.093 19 H 0.057 0.943 20 C 0.163 3.837 21 N -0.762 5.762 22 C -0.229 4.229 23 H 0.064 0.936 24 C -0.057 4.057 25 N -0.979 5.979 26 Si 0.945 3.055 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.265 1.265 30 C 0.123 3.877 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.031 0.969 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.059 0.941 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.723 32.796 -0.389 37.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.012 4.012 3 O -0.080 6.080 4 C 0.023 3.977 5 C -0.110 4.110 6 C -0.188 4.188 7 C -0.187 4.187 8 N -0.192 5.192 9 C -0.212 4.212 10 C 0.377 3.623 11 O -0.451 6.451 12 N -0.320 5.320 13 C -0.044 4.044 14 C -0.157 4.157 15 C -0.099 4.099 16 H 0.101 0.899 17 C -0.206 4.206 18 C -0.113 4.113 19 H 0.076 0.924 20 C 0.037 3.963 21 N -0.407 5.407 22 C -0.360 4.360 23 H 0.082 0.918 24 C -0.249 4.249 25 N -0.630 5.630 26 Si 0.774 3.226 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.190 1.190 30 C 0.000 4.000 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.184 0.816 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.691 32.042 -0.481 37.098 hybrid contribution -2.051 0.122 0.006 2.055 sum 16.640 32.163 -0.475 36.216 Atomic orbital electron populations 1.20693 0.81192 1.05951 1.05543 1.24032 0.95886 0.82925 0.98348 1.84308 1.18070 1.35729 1.69911 1.26014 0.83771 0.89824 0.98104 1.20635 0.91109 0.90066 1.09175 1.23240 1.04497 0.91433 0.99650 1.23259 1.05144 0.98993 0.91353 1.70412 1.20197 1.08996 1.19620 1.21257 0.89881 0.94688 1.15387 1.17186 0.84919 0.83677 0.76526 1.90777 1.17829 1.83571 1.52948 1.47997 1.10455 1.05312 1.68230 1.22951 0.78587 1.04850 0.98058 1.21992 1.02950 0.93648 0.97072 1.21077 0.91802 0.97054 0.99958 0.89892 1.21952 1.00700 1.01040 0.96891 1.21595 0.98314 0.94284 0.97078 0.92434 1.20849 0.83060 0.93537 0.98864 1.42868 1.03558 1.04849 1.89437 1.19069 0.91381 0.85764 1.39806 0.91773 1.25356 0.98281 0.98426 1.02854 1.69851 1.12871 1.21213 1.59061 0.85555 0.79046 0.79867 0.78166 1.20920 1.21533 1.19049 1.21577 1.00379 0.79558 0.98463 0.87928 0.87317 0.88677 0.81644 0.88582 0.84716 0.84734 0.89149 0.90560 0.84382 0.92796 0.87630 0.92870 0.90304 0.93001 0.94497 0.95076 0.80593 0.93268 0.92217 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.95 71.24 0.71 -0.78 16 2 C 0.04 1.05 7.44 25.19 0.19 1.24 16 3 O -0.19 -3.82 10.40 0.37 0.00 -3.81 16 4 C 0.23 4.21 7.80 88.39 0.69 4.90 16 5 C -0.09 -0.85 6.33 -11.54 -0.07 -0.92 16 6 C -0.15 -0.80 10.16 30.60 0.31 -0.49 16 7 C -0.15 -0.88 10.23 30.60 0.31 -0.57 16 8 N -0.46 -10.63 7.81 -293.04 -2.29 -12.92 16 9 C -0.09 -2.58 6.68 40.41 0.27 -2.31 16 10 C 0.59 19.71 7.68 86.66 0.67 20.37 16 11 O -0.57 -22.65 14.20 -4.06 -0.06 -22.71 16 12 N -0.59 -17.97 2.97 -821.94 -2.44 -20.41 16 13 C 0.08 1.75 5.68 86.51 0.49 2.24 16 14 C -0.12 -2.39 5.64 30.82 0.17 -2.21 16 15 C -0.08 -1.89 2.71 -10.77 -0.03 -1.92 16 16 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 17 C -0.15 -3.17 8.11 71.98 0.58 -2.58 16 18 C -0.09 -3.02 2.15 -10.71 -0.02 -3.04 16 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 20 C 0.16 6.48 5.19 86.38 0.45 6.93 16 21 N -0.76 -38.41 5.18 -343.45 -1.78 -40.19 16 22 C -0.23 -13.74 10.47 84.04 0.88 -12.86 16 23 H 0.06 4.11 8.06 -2.91 -0.02 4.09 16 24 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 25 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 26 Si 0.95 49.81 27.74 68.60 1.90 51.71 16 27 H -0.28 -14.81 7.11 99.48 0.71 -14.11 16 28 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 29 H -0.27 -13.33 6.52 99.48 0.65 -12.68 16 30 C 0.12 4.20 5.06 86.36 0.44 4.64 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.09 2.31 6.36 -2.39 -0.02 2.30 16 34 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.69 7.94 -2.39 -0.02 0.67 16 36 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.13 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 1.60 6.69 -2.39 -0.02 1.59 16 40 H 0.14 3.12 4.07 -22.84 -0.09 3.03 16 41 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.18 4.96 -2.39 -0.01 1.17 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.24 6.57 -2.39 -0.02 1.22 16 46 H 0.04 1.45 6.73 -2.39 -0.02 1.44 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.36 18.30 4.75 -92.71 -0.44 17.86 16 49 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 50 H 0.06 2.49 6.20 -2.39 -0.01 2.47 16 51 H 0.08 2.58 6.69 -2.39 -0.02 2.56 16 Total: -1.00 -79.06 394.80 2.52 -76.54 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.38 Total: 26.90 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 6.50 Total: 9.54 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -6.20 Total: -138.17 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.90 Total: 51.71 kcal Total: -79.06 2.52 -76.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.170 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds