Wall clock time and date at job start Wed Apr 1 2020 04:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30009 * 127.33960 * 2 1 4 4 O 1.20664 * 112.30319 * 180.27604 * 3 2 1 5 5 C 1.33491 * 113.15430 * 359.72826 * 4 3 2 6 6 C 1.50697 * 126.82953 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47120 * 299.99646 * 6 5 4 8 8 C 1.52999 * 109.47335 * 59.99769 * 6 5 4 9 9 C 1.37364 * 106.34192 * 0.02562 * 5 4 3 10 10 C 1.47395 * 128.56293 * 179.97438 * 9 5 4 11 11 O 1.21608 * 120.00000 * 90.00432 * 10 9 5 12 12 N 1.34776 * 120.00288 * 269.99941 * 10 9 5 13 13 C 1.46502 * 120.00103 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47760 * 179.97438 * 14 13 12 16 16 C 1.29457 * 117.69284 * 94.99256 * 15 14 13 17 17 C 1.50319 * 123.65117 * 180.57773 * 16 15 14 18 18 N 1.47010 * 109.16396 * 349.28755 * 17 16 15 19 19 C 1.36939 * 121.37262 * 222.96294 * 18 17 16 20 20 H 1.08006 * 119.99321 * 155.96770 * 19 18 17 21 21 C 1.38810 * 120.00352 * 335.97266 * 19 18 17 22 22 N 1.31617 * 119.99875 * 344.52484 * 21 19 18 23 23 Si 1.86807 * 119.99988 * 164.52017 * 21 19 18 24 24 H 1.48495 * 109.46984 * 60.00138 * 23 21 19 25 25 H 1.48500 * 109.46904 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47058 * 299.99897 * 23 21 19 27 27 C 1.47338 * 117.25069 * 42.95114 * 18 17 16 28 28 C 1.49964 * 117.69058 * 275.22400 * 15 14 13 29 29 H 1.09001 * 109.46977 * 270.15302 * 1 2 3 30 30 H 1.09000 * 109.46963 * 30.14478 * 1 2 3 31 31 H 1.08994 * 109.47150 * 150.14820 * 1 2 3 32 32 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46690 * 60.00077 * 7 6 5 34 34 H 1.08999 * 109.47174 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47359 * 300.00436 * 7 6 5 36 36 H 1.09001 * 109.47194 * 300.00364 * 8 6 5 37 37 H 1.08997 * 109.46836 * 60.00503 * 8 6 5 38 38 H 1.08999 * 109.47335 * 180.02562 * 8 6 5 39 39 H 0.96994 * 119.99684 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.47313 * 60.00010 * 13 12 10 41 41 H 1.09007 * 109.47033 * 300.00127 * 13 12 10 42 42 H 1.09006 * 109.47045 * 59.99189 * 14 13 12 43 43 H 1.09004 * 109.46703 * 300.00428 * 14 13 12 44 44 H 1.08003 * 118.17487 * 0.86945 * 16 15 14 45 45 H 1.09004 * 109.52258 * 109.19397 * 17 16 15 46 46 H 1.08999 * 109.52598 * 229.38084 * 17 16 15 47 47 H 0.97002 * 119.99820 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.78070 * 57.80258 * 27 18 17 49 49 H 1.09002 * 109.77840 * 178.61854 * 27 18 17 50 50 H 1.08995 * 109.43781 * 40.81758 * 28 15 14 51 51 H 1.09004 * 109.12988 * 281.42366 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4609 0.7206 -0.0054 5 6 3.6494 -0.6009 -0.0041 6 6 4.9711 -1.3249 -0.0091 7 6 5.7591 -0.9393 -1.2627 8 6 5.7707 -0.9353 1.2358 9 6 2.3991 -1.1697 0.0025 10 6 2.0399 -2.5992 0.0060 11 8 1.8968 -3.1877 1.0605 12 7 1.8701 -3.2542 -1.1596 13 6 1.5126 -4.6750 -1.1562 14 6 1.3821 -5.1716 -2.5974 15 6 1.0150 -6.6331 -2.5940 16 6 -0.2395 -6.9386 -2.6879 17 6 -0.7556 -8.3504 -2.6849 18 7 0.3766 -9.2783 -2.8202 19 6 0.3116 -10.3661 -3.6496 20 1 1.2193 -10.8027 -4.0395 21 6 -0.9206 -10.9073 -3.9893 22 7 -1.9931 -10.5885 -3.2961 23 14 -1.0568 -12.0882 -5.4304 24 1 -0.2003 -13.2752 -5.1803 25 1 -2.4693 -12.5200 -5.5846 26 1 -0.6094 -11.4076 -6.6720 27 6 1.5841 -8.9896 -2.0269 28 6 2.1283 -7.6310 -2.4766 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 4.7961 -2.4007 -0.0070 33 1 5.9341 0.1365 -1.2652 34 1 6.7153 -1.4626 -1.2660 35 1 5.1895 -1.2168 -2.1496 36 1 5.9457 0.1406 1.2333 37 1 5.2094 -1.2100 2.1288 38 1 6.7269 -1.4586 1.2320 39 1 1.9846 -2.7850 -2.0007 40 1 0.5633 -4.8095 -0.6378 41 1 2.2894 -5.2439 -0.6451 42 1 2.3317 -5.0370 -3.1155 43 1 0.6056 -4.6027 -3.1088 44 1 -0.9548 -6.1344 -2.7781 45 1 -1.2767 -8.5457 -1.7476 46 1 -1.4421 -8.4891 -3.5201 47 1 -2.8541 -10.9670 -3.5333 48 1 1.3294 -8.9526 -0.9676 49 1 2.3328 -9.7626 -2.2002 50 1 2.8581 -7.2763 -1.7489 51 1 2.6138 -7.7402 -3.4463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160431175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:16 Heat of formation + Delta-G solvation = 42.346879 kcal Electronic energy + Delta-G solvation = -30201.597923 eV Core-core repulsion = 26104.587441 eV Total energy + Delta-G solvation = -4097.010482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.21901 -39.81566 -37.93687 -36.51739 -35.51049 -34.89965 -33.59092 -31.62754 -31.15054 -29.87251 -29.18801 -28.71503 -27.69205 -25.84025 -24.50723 -23.34409 -22.98243 -22.44828 -21.11548 -20.81405 -19.73727 -18.21313 -18.01582 -17.61754 -16.64956 -16.37428 -16.05572 -15.66476 -15.28866 -14.96170 -14.69620 -14.17531 -14.06871 -13.86483 -13.81334 -13.65258 -13.62195 -13.51398 -13.32028 -13.20248 -12.70153 -12.65701 -12.25936 -12.04581 -11.97541 -11.82545 -11.80137 -11.60876 -11.45753 -11.28282 -11.05335 -10.91964 -10.73656 -10.54125 -10.33782 -10.24245 -10.19124 -9.82358 -9.76833 -9.57087 -9.29296 -8.66093 -7.94628 -6.73248 -5.79075 -3.17891 0.95329 1.56825 2.13791 2.43994 2.81243 3.11132 3.38394 3.43964 3.44998 3.73408 3.82124 4.32553 4.36287 4.49313 4.49769 4.62176 4.77308 4.98787 5.05082 5.09667 5.11919 5.13190 5.23167 5.24345 5.27574 5.29849 5.34556 5.39013 5.49427 5.52841 5.60002 5.66553 5.70256 5.72800 5.74961 5.95387 5.98308 6.10927 6.17683 6.22867 6.37789 6.54014 6.77501 6.89282 7.17882 7.22269 7.31703 7.39350 7.74194 7.86672 7.87899 7.89011 8.38956 9.20301 9.83163 10.41742 11.31303 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.001921 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.108767 B =14571.517844 C =15288.944235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.099 5.901 5 C 0.028 3.972 6 C -0.017 4.017 7 C -0.150 4.150 8 C -0.150 4.150 9 C -0.250 4.250 10 C 0.596 3.404 11 O -0.521 6.521 12 N -0.717 5.717 13 C 0.123 3.877 14 C -0.091 4.091 15 C -0.143 4.143 16 C -0.145 4.145 17 C 0.196 3.804 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.068 0.932 21 C -0.002 4.002 22 N -0.910 5.910 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.143 3.857 28 C -0.091 4.091 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 23.152 4.660 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.062 5.062 4 O 0.038 5.962 5 C -0.036 4.036 6 C -0.037 4.037 7 C -0.207 4.207 8 C -0.207 4.207 9 C -0.257 4.257 10 C 0.380 3.620 11 O -0.397 6.397 12 N -0.368 5.368 13 C 0.000 4.000 14 C -0.129 4.129 15 C -0.144 4.144 16 C -0.165 4.165 17 C 0.071 3.929 18 N -0.319 5.319 19 C -0.375 4.375 20 H 0.085 0.915 21 C -0.200 4.200 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.069 23.930 5.395 27.339 hybrid contribution -0.350 -1.056 -1.142 1.594 sum 11.719 22.874 4.254 26.051 Atomic orbital electron populations 1.20242 0.85028 1.04206 1.04118 1.24765 0.98619 0.86462 1.00879 1.73632 0.89128 1.23311 1.20170 1.84512 1.21425 1.22487 1.67773 1.24666 0.96840 0.83731 0.98362 1.19943 0.86971 0.98696 0.98071 1.21899 1.00283 1.02704 0.95803 1.21886 1.00137 1.02568 0.96148 1.21967 0.92786 0.95379 1.15582 1.16867 0.77157 0.83808 0.84200 1.90859 1.49791 1.67916 1.31092 1.46093 1.70514 1.12167 1.08043 1.21544 1.01603 0.78672 0.98141 1.20908 1.02007 0.95407 0.94578 1.20202 0.95499 0.92645 1.06047 1.23135 0.95470 1.00500 0.97357 1.19709 0.89932 0.82227 1.01014 1.44125 1.11917 1.26852 1.48979 1.19137 0.92615 1.05623 1.20160 0.91455 1.24991 0.96528 0.98840 0.99600 1.70006 0.99128 1.47198 1.39142 0.86326 0.76681 0.80793 0.82725 1.20924 1.21636 1.21123 1.20952 0.90239 0.93402 0.93767 1.20760 0.95463 0.96298 1.00484 0.89478 0.89817 0.89732 0.87858 0.91527 0.90795 0.91917 0.91566 0.91792 0.90818 0.76460 0.90920 0.90910 0.91382 0.91467 0.89069 0.94401 0.89135 0.93569 0.95856 0.92533 0.92872 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.49 36.01 0.38 -0.25 16 2 C 0.05 0.58 7.59 -79.77 -0.61 -0.03 16 3 N -0.36 -3.99 12.01 34.78 0.42 -3.57 16 4 O 0.10 1.01 11.06 18.66 0.21 1.21 16 5 C 0.03 0.26 6.06 -34.63 -0.21 0.05 16 6 C -0.02 -0.12 3.33 -91.77 -0.31 -0.42 16 7 C -0.15 -0.75 9.18 37.16 0.34 -0.41 16 8 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 9 C -0.25 -2.69 6.24 -102.89 -0.64 -3.33 16 10 C 0.60 7.26 7.30 -12.53 -0.09 7.16 16 11 O -0.52 -8.44 17.11 5.27 0.09 -8.35 16 12 N -0.72 -7.23 5.55 -61.39 -0.34 -7.57 16 13 C 0.12 1.47 5.66 -4.04 -0.02 1.44 16 14 C -0.09 -1.10 5.32 -27.89 -0.15 -1.25 16 15 C -0.14 -2.36 5.11 -101.00 -0.52 -2.88 16 16 C -0.15 -2.73 9.47 -35.78 -0.34 -3.06 16 17 C 0.20 4.66 5.23 -5.10 -0.03 4.63 16 18 N -0.60 -14.91 3.01 -173.67 -0.52 -15.43 16 19 C -0.25 -6.72 9.71 -15.06 -0.15 -6.87 16 20 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 21 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 22 N -0.91 -26.22 11.08 55.49 0.61 -25.60 16 23 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.14 2.97 6.58 -3.53 -0.02 2.94 16 28 C -0.09 -1.55 5.94 -28.18 -0.17 -1.72 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.76 7.70 -51.93 -0.40 0.36 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.40 3.06 8.46 -40.82 -0.35 2.71 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.94 8.07 -51.92 -0.42 0.52 16 42 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 44 H 0.09 1.51 7.73 -52.48 -0.41 1.10 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 2.39 6.41 -51.93 -0.33 2.05 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 50 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 420.44 15.07 6.34 6.34 Total: -1.00 -32.59 420.44 -9.10 -41.69 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.61 Total: -0.63 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.27 Total: -4.66 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.17 Total: -52.17 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.30 Total: -7.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.59 -9.10 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160431175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.037 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds