Wall clock time and date at job start Wed Apr 1 2020 04:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30009 * 127.33960 * 2 1 4 4 O 1.20664 * 112.30319 * 180.27604 * 3 2 1 5 5 C 1.33491 * 113.15430 * 359.72826 * 4 3 2 6 6 C 1.50697 * 126.82953 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47120 * 299.99646 * 6 5 4 8 8 C 1.52999 * 109.47335 * 59.99769 * 6 5 4 9 9 C 1.37364 * 106.34192 * 0.02562 * 5 4 3 10 10 C 1.47395 * 128.56293 * 179.97438 * 9 5 4 11 11 O 1.21608 * 120.00000 * 90.00432 * 10 9 5 12 12 N 1.34776 * 120.00288 * 269.99941 * 10 9 5 13 13 C 1.46502 * 120.00103 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47760 * 179.97438 * 14 13 12 16 16 C 1.29457 * 117.69284 * 94.99256 * 15 14 13 17 17 C 1.50319 * 123.65117 * 180.57773 * 16 15 14 18 18 N 1.47010 * 109.16396 * 349.28755 * 17 16 15 19 19 C 1.36939 * 121.37262 * 222.96294 * 18 17 16 20 20 H 1.08006 * 119.99321 * 155.96770 * 19 18 17 21 21 C 1.38810 * 120.00352 * 335.97266 * 19 18 17 22 22 N 1.31617 * 119.99875 * 344.52484 * 21 19 18 23 23 Si 1.86807 * 119.99988 * 164.52017 * 21 19 18 24 24 H 1.48495 * 109.46984 * 60.00138 * 23 21 19 25 25 H 1.48500 * 109.46904 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47058 * 299.99897 * 23 21 19 27 27 C 1.47338 * 117.25069 * 42.95114 * 18 17 16 28 28 C 1.49964 * 117.69058 * 275.22400 * 15 14 13 29 29 H 1.09001 * 109.46977 * 270.15302 * 1 2 3 30 30 H 1.09000 * 109.46963 * 30.14478 * 1 2 3 31 31 H 1.08994 * 109.47150 * 150.14820 * 1 2 3 32 32 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46690 * 60.00077 * 7 6 5 34 34 H 1.08999 * 109.47174 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47359 * 300.00436 * 7 6 5 36 36 H 1.09001 * 109.47194 * 300.00364 * 8 6 5 37 37 H 1.08997 * 109.46836 * 60.00503 * 8 6 5 38 38 H 1.08999 * 109.47335 * 180.02562 * 8 6 5 39 39 H 0.96994 * 119.99684 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.47313 * 60.00010 * 13 12 10 41 41 H 1.09007 * 109.47033 * 300.00127 * 13 12 10 42 42 H 1.09006 * 109.47045 * 59.99189 * 14 13 12 43 43 H 1.09004 * 109.46703 * 300.00428 * 14 13 12 44 44 H 1.08003 * 118.17487 * 0.86945 * 16 15 14 45 45 H 1.09004 * 109.52258 * 109.19397 * 17 16 15 46 46 H 1.08999 * 109.52598 * 229.38084 * 17 16 15 47 47 H 0.97002 * 119.99820 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.78070 * 57.80258 * 27 18 17 49 49 H 1.09002 * 109.77840 * 178.61854 * 27 18 17 50 50 H 1.08995 * 109.43781 * 40.81758 * 28 15 14 51 51 H 1.09004 * 109.12988 * 281.42366 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4609 0.7206 -0.0054 5 6 3.6494 -0.6009 -0.0041 6 6 4.9711 -1.3249 -0.0091 7 6 5.7591 -0.9393 -1.2627 8 6 5.7707 -0.9353 1.2358 9 6 2.3991 -1.1697 0.0025 10 6 2.0399 -2.5992 0.0060 11 8 1.8968 -3.1877 1.0605 12 7 1.8701 -3.2542 -1.1596 13 6 1.5126 -4.6750 -1.1562 14 6 1.3821 -5.1716 -2.5974 15 6 1.0150 -6.6331 -2.5940 16 6 -0.2395 -6.9386 -2.6879 17 6 -0.7556 -8.3504 -2.6849 18 7 0.3766 -9.2783 -2.8202 19 6 0.3116 -10.3661 -3.6496 20 1 1.2193 -10.8027 -4.0395 21 6 -0.9206 -10.9073 -3.9893 22 7 -1.9931 -10.5885 -3.2961 23 14 -1.0568 -12.0882 -5.4304 24 1 -0.2003 -13.2752 -5.1803 25 1 -2.4693 -12.5200 -5.5846 26 1 -0.6094 -11.4076 -6.6720 27 6 1.5841 -8.9896 -2.0269 28 6 2.1283 -7.6310 -2.4766 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 4.7961 -2.4007 -0.0070 33 1 5.9341 0.1365 -1.2652 34 1 6.7153 -1.4626 -1.2660 35 1 5.1895 -1.2168 -2.1496 36 1 5.9457 0.1406 1.2333 37 1 5.2094 -1.2100 2.1288 38 1 6.7269 -1.4586 1.2320 39 1 1.9846 -2.7850 -2.0007 40 1 0.5633 -4.8095 -0.6378 41 1 2.2894 -5.2439 -0.6451 42 1 2.3317 -5.0370 -3.1155 43 1 0.6056 -4.6027 -3.1088 44 1 -0.9548 -6.1344 -2.7781 45 1 -1.2767 -8.5457 -1.7476 46 1 -1.4421 -8.4891 -3.5201 47 1 -2.8541 -10.9670 -3.5333 48 1 1.3294 -8.9526 -0.9676 49 1 2.3328 -9.7626 -2.2002 50 1 2.8581 -7.2763 -1.7489 51 1 2.6138 -7.7402 -3.4463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160431175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:15 Heat of formation + Delta-G solvation = 23.415070 kcal Electronic energy + Delta-G solvation = -30202.418868 eV Core-core repulsion = 26104.587441 eV Total energy + Delta-G solvation = -4097.831426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.99769 -40.80754 -39.45076 -37.08334 -36.77521 -35.68031 -35.11040 -33.18982 -32.08690 -31.46384 -30.23345 -29.77008 -28.10222 -27.35094 -25.72588 -24.52507 -23.93540 -23.80206 -22.47969 -21.87410 -20.45382 -19.45612 -19.03520 -18.80670 -17.70830 -17.32996 -17.08908 -16.92859 -16.78340 -16.08385 -15.78660 -15.43245 -15.38198 -15.12581 -14.92676 -14.66432 -14.41710 -14.32704 -14.21595 -14.14003 -13.85743 -13.79956 -13.38106 -13.20019 -13.07114 -12.85939 -12.76193 -12.60243 -12.56605 -12.38795 -12.33758 -12.25476 -12.20455 -11.90929 -11.86339 -11.67324 -11.49335 -11.14110 -11.00693 -10.66958 -10.53118 -10.25179 -9.47377 -8.74127 -7.87314 -5.29360 0.21194 0.78173 1.20730 1.41542 1.47076 1.49685 1.56373 1.71632 2.20097 2.51687 3.03562 3.11134 3.29337 3.61787 3.69055 3.73099 3.96053 3.97811 4.03112 4.10240 4.11715 4.14819 4.30431 4.39380 4.52359 4.55442 4.57307 4.60981 4.67493 4.70051 4.76742 4.86774 4.88454 4.91225 4.92122 4.98619 5.02973 5.06218 5.07008 5.19327 5.25690 5.27611 5.28981 5.33142 5.43360 5.52223 5.61544 5.89600 6.29263 6.34504 6.35637 7.00586 7.12161 7.14064 7.84514 8.39057 9.21081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.001921 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.108767 B =14571.517844 C =15288.944235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.051 3.949 3 N -0.374 5.374 4 O 0.097 5.903 5 C 0.043 3.957 6 C -0.018 4.018 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.272 4.272 10 C 0.604 3.396 11 O -0.567 6.567 12 N -0.698 5.698 13 C 0.131 3.869 14 C -0.079 4.079 15 C -0.119 4.119 16 C -0.175 4.175 17 C 0.206 3.794 18 N -0.616 5.616 19 C -0.257 4.257 20 H 0.071 0.929 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.278 1.278 27 C 0.135 3.865 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.417 0.583 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.001 0.999 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.951 24.783 3.421 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 N -0.082 5.082 4 O 0.037 5.963 5 C -0.021 4.021 6 C -0.038 4.038 7 C -0.203 4.203 8 C -0.207 4.207 9 C -0.279 4.279 10 C 0.389 3.611 11 O -0.445 6.445 12 N -0.350 5.350 13 C 0.008 3.992 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.194 4.194 17 C 0.081 3.919 18 N -0.340 5.340 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.252 4.252 22 N -0.588 5.588 23 Si 0.799 3.201 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.009 3.991 28 C -0.126 4.126 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.254 0.746 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.019 0.981 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.519 25.594 4.127 29.713 hybrid contribution -0.994 -1.566 -0.687 1.977 sum 13.525 24.028 3.440 27.787 Atomic orbital electron populations 1.20356 0.83635 1.05161 1.04578 1.25156 0.99637 0.86175 1.00109 1.73625 0.89514 1.23813 1.21291 1.84494 1.21166 1.22840 1.67785 1.25134 0.97439 0.83348 0.96208 1.20112 0.86097 0.98121 0.99460 1.21901 1.00678 1.03098 0.94630 1.21901 1.00609 1.03163 0.94980 1.21872 0.93624 0.94709 1.17716 1.16954 0.76231 0.84127 0.83833 1.90841 1.51986 1.68973 1.32749 1.45864 1.69332 1.11446 1.08334 1.21313 1.00658 0.79512 0.97723 1.20804 1.03945 0.91939 0.94921 1.20550 0.94329 0.95303 1.01773 1.22826 0.97177 0.97900 1.01477 1.19351 0.89351 0.85371 0.97828 1.44430 1.13309 1.26757 1.49482 1.19506 0.92815 1.06098 1.20328 0.91086 1.25799 0.96306 1.00977 1.02118 1.70190 0.99330 1.48622 1.40698 0.85285 0.76253 0.78914 0.79675 1.20055 1.22144 1.20360 1.21162 0.88885 0.95985 0.93035 1.20721 0.96135 0.94026 1.01670 0.89218 0.88421 0.89201 0.88192 0.91285 0.89178 0.91782 0.91081 0.93345 0.88934 0.74592 0.92659 0.91403 0.88627 0.89828 0.86878 0.98081 0.92756 0.94173 0.96473 0.92275 0.89301 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.49 71.24 0.75 -0.43 16 2 C 0.05 1.02 7.59 45.16 0.34 1.37 16 3 N -0.37 -7.99 12.01 -44.78 -0.54 -8.53 16 4 O 0.10 1.84 11.06 77.00 0.85 2.69 16 5 C 0.04 0.73 6.06 25.48 0.15 0.88 16 6 C -0.02 -0.21 3.33 -11.54 -0.04 -0.25 16 7 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 8 C -0.15 -1.50 9.18 71.98 0.66 -0.84 16 9 C -0.27 -5.50 6.24 -18.74 -0.12 -5.61 16 10 C 0.60 13.86 7.30 86.65 0.63 14.49 16 11 O -0.57 -18.11 17.11 -4.06 -0.07 -18.18 16 12 N -0.70 -12.24 5.55 -466.40 -2.59 -14.83 16 13 C 0.13 2.77 5.66 86.38 0.49 3.26 16 14 C -0.08 -1.58 5.32 29.85 0.16 -1.42 16 15 C -0.12 -3.63 5.11 -15.14 -0.08 -3.71 16 16 C -0.17 -6.49 9.47 27.10 0.26 -6.23 16 17 C 0.21 10.22 5.23 85.42 0.45 10.66 16 18 N -0.62 -31.44 3.01 -703.36 -2.12 -33.55 16 19 C -0.26 -14.29 9.71 84.03 0.82 -13.48 16 20 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 21 C -0.06 -3.24 5.01 84.86 0.43 -2.82 16 22 N -0.94 -56.50 11.08 21.65 0.24 -56.26 16 23 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.13 5.52 6.58 86.25 0.57 6.09 16 28 C -0.09 -2.72 5.94 29.65 0.18 -2.55 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.25 7.70 -2.39 -0.02 1.23 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.42 4.88 8.46 -92.71 -0.78 4.09 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.55 8.07 -2.38 -0.02 1.53 16 42 H 0.10 1.51 8.11 -2.38 -0.02 1.49 16 43 H 0.08 1.51 7.78 -2.39 -0.02 1.49 16 44 H 0.11 3.64 7.73 -2.91 -0.02 3.62 16 45 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 46 H 0.05 3.03 6.41 -2.39 -0.02 3.01 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 50 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 51 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -73.78 420.44 4.25 -69.53 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.14 Total: 12.96 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.30 Total: -0.97 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -5.00 Total: -113.16 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.78 Total: -15.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.78 4.25 -69.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160431175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.946 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds