Wall clock time and date at job start Wed Apr 1 2020 04:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34866 * 119.10414 * 2 1 4 4 C 1.41665 * 119.34300 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06630 * 180.02562 * 4 3 2 6 6 C 1.47097 * 117.86194 * 0.27618 * 4 3 2 7 7 C 1.47291 * 120.88300 * 179.72787 * 6 4 3 8 8 O 1.21621 * 119.99730 * 42.26075 * 7 6 4 9 9 N 1.34768 * 120.00348 * 222.26207 * 7 6 4 10 10 C 1.48150 * 127.83474 * 354.62061 * 9 7 6 11 11 C 1.54797 * 104.41531 * 140.36560 * 10 9 7 12 12 H 1.09000 * 110.19606 * 142.94034 * 11 10 9 13 13 C 1.52993 * 110.61662 * 265.17900 * 11 10 9 14 14 C 1.54285 * 104.92044 * 24.16668 * 11 10 9 15 15 C 1.52991 * 110.34192 * 240.93533 * 14 11 10 16 16 C 1.53002 * 110.34079 * 118.67445 * 14 11 10 17 17 N 1.46502 * 109.47034 * 183.00679 * 16 14 11 18 18 C 1.36934 * 120.00226 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00054 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99828 * 180.02562 * 18 17 16 21 21 N 1.31610 * 120.00214 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99674 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47442 * 60.00028 * 22 20 18 24 24 H 1.48497 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47021 * 300.00167 * 22 20 18 26 26 C 1.48141 * 127.84209 * 174.94131 * 9 7 6 27 27 C 1.37985 * 118.23773 * 359.46660 * 6 4 3 28 28 N 1.34353 * 120.36920 * 0.52844 * 27 6 4 29 29 C 1.46499 * 118.80337 * 179.71939 * 28 27 6 30 30 H 1.08997 * 109.47613 * 96.11851 * 1 2 3 31 31 H 1.09001 * 109.47158 * 216.11895 * 1 2 3 32 32 H 1.08998 * 109.47070 * 336.11958 * 1 2 3 33 33 H 1.08006 * 120.32880 * 359.97438 * 3 2 1 34 34 H 1.08994 * 110.40770 * 259.19861 * 10 9 7 35 35 H 1.09007 * 110.41001 * 21.63367 * 10 9 7 36 36 H 1.08994 * 109.47333 * 175.65033 * 13 11 10 37 37 H 1.09007 * 109.47166 * 295.64822 * 13 11 10 38 38 H 1.09002 * 109.47259 * 55.64640 * 13 11 10 39 39 H 1.09004 * 109.47357 * 176.99249 * 15 14 11 40 40 H 1.09004 * 109.47553 * 296.98914 * 15 14 11 41 41 H 1.08997 * 109.47775 * 56.98790 * 15 14 11 42 42 H 1.08997 * 109.47565 * 303.00512 * 16 14 11 43 43 H 1.09000 * 109.47062 * 63.01398 * 16 14 11 44 44 H 0.97005 * 120.00054 * 0.02562 * 17 16 14 45 45 H 0.97003 * 119.99895 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.40594 * 338.36945 * 26 9 7 47 47 H 1.08993 * 110.41029 * 100.80023 * 26 9 7 48 48 H 1.08000 * 119.81860 * 180.22442 * 27 6 4 49 49 H 1.09000 * 109.47098 * 263.70980 * 29 28 27 50 50 H 1.08996 * 109.47187 * 23.71570 * 29 28 27 51 51 H 1.09006 * 109.46915 * 143.71156 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2724 -0.1133 -0.0052 7 6 5.7436 -0.1847 -0.0110 8 8 6.3915 0.5627 0.6967 9 7 6.3718 -1.0783 -0.8004 10 6 5.7621 -2.1354 -1.6404 11 6 6.6031 -2.1279 -2.9399 12 1 6.7297 -3.1446 -3.3121 13 6 5.9412 -1.2512 -4.0049 14 6 7.9661 -1.5341 -2.5276 15 6 8.2427 -0.2466 -3.3064 16 6 9.0835 -2.5517 -2.7658 17 7 10.3572 -1.9958 -2.3019 18 6 11.5065 -2.7319 -2.4132 19 1 11.4742 -3.7220 -2.8432 20 6 12.7132 -2.2053 -1.9732 21 7 12.7525 -0.9989 -1.4486 22 14 14.2812 -3.2092 -2.1256 23 1 14.5284 -3.5272 -3.5548 24 1 15.4234 -2.4279 -1.5871 25 1 14.1381 -4.4708 -1.3554 26 6 7.8289 -1.2306 -1.0200 27 6 3.5077 -1.2618 0.0006 28 7 2.1663 -1.1847 0.0004 29 6 1.3880 -2.4258 0.0003 30 1 -0.3634 -0.1095 -1.0217 31 1 -0.3633 -0.8301 0.6058 32 1 -0.3633 0.9397 0.4160 33 1 1.6137 2.1083 -0.0004 34 1 5.8332 -3.1033 -1.1443 35 1 4.7216 -1.8947 -1.8585 36 1 6.5854 -1.1969 -4.8824 37 1 4.9806 -1.6833 -4.2855 38 1 5.7860 -0.2490 -3.6054 39 1 9.1823 0.1890 -2.9664 40 1 8.3112 -0.4730 -4.3704 41 1 7.4317 0.4618 -3.1373 42 1 8.8648 -3.4669 -2.2158 43 1 9.1509 -2.7748 -3.8305 44 1 10.3862 -1.1066 -1.9153 45 1 13.5959 -0.6309 -1.1415 46 1 8.3496 -0.3063 -0.7695 47 1 8.2179 -2.0593 -0.4286 48 1 3.9899 -2.2281 0.0003 49 1 1.0997 -2.6738 -1.0212 50 1 1.9920 -3.2335 0.4137 51 1 0.4931 -2.2934 0.6085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181793435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:23 Heat of formation + Delta-G solvation = -8.905876 kcal Electronic energy + Delta-G solvation = -31720.351048 eV Core-core repulsion = 27621.118081 eV Total energy + Delta-G solvation = -4099.232968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53578 -40.06431 -38.39382 -37.49858 -34.78657 -33.85086 -33.17804 -32.58833 -31.44661 -29.65537 -28.76683 -27.36402 -27.11957 -25.52005 -25.46037 -24.30500 -23.12582 -21.93814 -21.15685 -19.85139 -18.52811 -18.10902 -17.56397 -16.89854 -16.69435 -16.45179 -15.96964 -15.70820 -15.18297 -14.52111 -14.47824 -14.24047 -14.15257 -13.99189 -13.91592 -13.65289 -13.54352 -13.44968 -13.26982 -12.99716 -12.90475 -12.81715 -12.45886 -12.40665 -12.25270 -12.09217 -11.87065 -11.44815 -11.22202 -11.19039 -10.94660 -10.75759 -10.39433 -10.26626 -10.16804 -9.93745 -9.83555 -9.72129 -9.55681 -9.30313 -8.82220 -8.47732 -8.15747 -6.86157 -5.69570 -2.98788 0.70323 1.03169 1.98933 2.89188 3.12180 3.47822 3.51858 3.53819 3.63790 3.73011 4.02201 4.17361 4.32325 4.41021 4.54625 4.60235 4.63254 4.70188 4.77105 4.83281 4.88875 4.94016 5.05693 5.21344 5.31846 5.38017 5.41022 5.48266 5.50783 5.56010 5.61826 5.70144 5.84899 5.95408 6.00809 6.02992 6.16943 6.23257 6.25580 6.28012 6.31835 6.38681 6.47175 6.51177 6.67958 6.75545 6.83130 6.94530 7.74178 7.77664 8.02058 8.45427 8.48683 9.59685 10.17832 10.52157 11.52914 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002506 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.164651 B =11171.420030 C =11594.051528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 C -0.271 4.271 4 C 0.410 3.590 5 O -0.489 6.489 6 C -0.283 4.283 7 C 0.596 3.404 8 O -0.515 6.515 9 N -0.621 5.621 10 C 0.098 3.902 11 C -0.096 4.096 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.132 4.132 16 C 0.170 3.830 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.123 3.877 27 C 0.162 3.838 28 N -0.473 5.473 29 C 0.049 3.951 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.169 0.831 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.035 -6.207 -0.333 33.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.296 3.704 5 O -0.370 6.370 6 C -0.294 4.294 7 C 0.384 3.616 8 O -0.390 6.390 9 N -0.356 5.356 10 C -0.025 4.025 11 C -0.116 4.116 12 H 0.105 0.895 13 C -0.199 4.199 14 C -0.076 4.076 15 C -0.189 4.189 16 C 0.042 3.958 17 N -0.375 5.375 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.001 3.999 27 C 0.033 3.967 28 N -0.161 5.161 29 C -0.092 4.092 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.170 0.830 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.186 0.814 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -32.394 -5.421 0.112 32.845 hybrid contribution 0.931 -0.536 0.016 1.074 sum -31.463 -5.956 0.129 32.022 Atomic orbital electron populations 1.21180 0.88069 1.05041 1.04076 1.20253 0.94821 0.85002 0.94893 1.22221 0.96127 0.97235 1.13925 1.18144 0.88342 0.87671 0.76198 1.90824 1.70033 1.33356 1.42824 1.22479 0.94311 0.95234 1.17386 1.17027 0.85674 0.79445 0.79470 1.90848 1.66634 1.41203 1.40295 1.48945 1.08804 1.32793 1.45032 1.22700 0.97499 0.90877 0.91438 1.22182 0.94628 1.00354 0.94392 0.89489 1.21894 0.99438 0.99925 0.98594 1.21707 0.94362 0.97137 0.94384 1.21863 1.01777 0.95776 0.99517 1.20698 0.85281 0.93064 0.96804 1.42393 1.01970 1.18953 1.74214 1.19141 0.85942 0.98105 1.34064 0.91340 1.24742 0.97726 0.96770 1.01644 1.69648 1.25650 1.15804 1.46768 0.86288 0.83369 0.79080 0.77530 1.21359 1.21741 1.21363 1.22458 0.79221 1.03082 0.95151 1.22258 0.81947 0.99998 0.92545 1.42533 1.05223 1.07129 1.61173 1.22529 0.97784 0.84416 1.04469 0.89317 0.90149 0.88883 0.83028 0.90988 0.90893 0.91786 0.93466 0.92295 0.91549 0.92561 0.93214 0.96319 0.96055 0.77989 0.93407 0.89606 0.90394 0.81361 0.89882 0.88859 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.24 9.34 36.00 0.34 0.10 16 2 C 0.16 0.97 6.64 -82.13 -0.55 0.42 16 3 C -0.27 -2.79 9.57 -39.47 -0.38 -3.16 16 4 C 0.41 6.45 6.94 -34.68 -0.24 6.21 16 5 O -0.49 -10.26 17.13 -3.62 -0.06 -10.32 16 6 C -0.28 -3.97 5.62 -102.72 -0.58 -4.55 16 7 C 0.60 10.67 7.39 -12.58 -0.09 10.57 16 8 O -0.52 -11.98 16.83 -3.20 -0.05 -12.04 16 9 N -0.62 -9.55 3.31 -170.37 -0.56 -10.11 16 10 C 0.10 1.05 5.09 -2.19 -0.01 1.03 16 11 C -0.10 -1.15 3.30 -89.00 -0.29 -1.44 16 12 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16 13 C -0.14 -1.57 7.95 37.15 0.30 -1.27 16 14 C -0.07 -1.21 0.73 -153.11 -0.11 -1.33 16 15 C -0.13 -2.27 7.08 37.15 0.26 -2.01 16 16 C 0.17 3.31 4.85 -4.04 -0.02 3.29 16 17 N -0.73 -18.40 5.12 -59.91 -0.31 -18.71 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 2.19 5.53 -2.41 -0.01 2.18 16 27 C 0.16 1.33 8.07 -16.54 -0.13 1.19 16 28 N -0.47 -2.52 2.97 -119.75 -0.36 -2.88 16 29 C 0.05 0.03 9.97 59.85 0.60 0.62 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.08 0.00 6.02 -51.93 -0.31 -0.32 16 32 H 0.09 0.15 7.97 -51.93 -0.41 -0.27 16 33 H 0.15 1.34 8.01 -52.48 -0.42 0.92 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.61 5.72 -51.92 -0.30 0.32 16 36 H 0.06 0.73 6.89 -51.93 -0.36 0.37 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.75 6.72 -51.93 -0.35 0.41 16 39 H 0.07 1.34 7.01 -51.93 -0.36 0.97 16 40 H 0.06 0.90 6.98 -51.93 -0.36 0.54 16 41 H 0.05 0.83 6.62 -51.93 -0.34 0.49 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.39 10.40 6.28 -40.82 -0.26 10.14 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.09 1.82 7.65 -51.93 -0.40 1.42 16 47 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 48 H 0.17 0.93 6.42 -52.49 -0.34 0.60 16 49 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 50 H 0.09 -0.05 7.85 -51.93 -0.41 -0.46 16 51 H 0.09 -0.10 5.96 -51.93 -0.31 -0.41 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -41.23 399.49 -8.61 -49.84 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.82 Total: 4.10 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.17 Total: 4.49 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.50 Total: -59.80 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.12 Total: -22.36 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -41.23 -8.61 -49.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181793435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.933 kcal (2) G-P(sol) polarization free energy of solvation -41.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds