Wall clock time and date at job start Wed Apr 1 2020 04:26:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.34866 * 119.10414 * 2 1
4 4 C 1.41665 * 119.34300 * 179.97438 * 3 2 1
5 5 O 1.22086 * 121.06630 * 180.02562 * 4 3 2
6 6 C 1.47097 * 117.86194 * 0.27618 * 4 3 2
7 7 C 1.47291 * 120.88300 * 179.72787 * 6 4 3
8 8 O 1.21621 * 119.99730 * 42.26075 * 7 6 4
9 9 N 1.34768 * 120.00348 * 222.26207 * 7 6 4
10 10 C 1.48150 * 127.83474 * 354.62061 * 9 7 6
11 11 C 1.54797 * 104.41531 * 140.36560 * 10 9 7
12 12 H 1.09000 * 110.19606 * 142.94034 * 11 10 9
13 13 C 1.52993 * 110.61662 * 265.17900 * 11 10 9
14 14 C 1.54285 * 104.92044 * 24.16668 * 11 10 9
15 15 C 1.52991 * 110.34192 * 240.93533 * 14 11 10
16 16 C 1.53002 * 110.34079 * 118.67445 * 14 11 10
17 17 N 1.46502 * 109.47034 * 183.00679 * 16 14 11
18 18 C 1.36934 * 120.00226 * 179.97438 * 17 16 14
19 19 H 1.07997 * 120.00054 * 0.02562 * 18 17 16
20 20 C 1.38816 * 119.99828 * 180.02562 * 18 17 16
21 21 N 1.31610 * 120.00214 * 0.02562 * 20 18 17
22 22 Si 1.86804 * 119.99674 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47442 * 60.00028 * 22 20 18
24 24 H 1.48497 * 109.47061 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47021 * 300.00167 * 22 20 18
26 26 C 1.48141 * 127.84209 * 174.94131 * 9 7 6
27 27 C 1.37985 * 118.23773 * 359.46660 * 6 4 3
28 28 N 1.34353 * 120.36920 * 0.52844 * 27 6 4
29 29 C 1.46499 * 118.80337 * 179.71939 * 28 27 6
30 30 H 1.08997 * 109.47613 * 96.11851 * 1 2 3
31 31 H 1.09001 * 109.47158 * 216.11895 * 1 2 3
32 32 H 1.08998 * 109.47070 * 336.11958 * 1 2 3
33 33 H 1.08006 * 120.32880 * 359.97438 * 3 2 1
34 34 H 1.08994 * 110.40770 * 259.19861 * 10 9 7
35 35 H 1.09007 * 110.41001 * 21.63367 * 10 9 7
36 36 H 1.08994 * 109.47333 * 175.65033 * 13 11 10
37 37 H 1.09007 * 109.47166 * 295.64822 * 13 11 10
38 38 H 1.09002 * 109.47259 * 55.64640 * 13 11 10
39 39 H 1.09004 * 109.47357 * 176.99249 * 15 14 11
40 40 H 1.09004 * 109.47553 * 296.98914 * 15 14 11
41 41 H 1.08997 * 109.47775 * 56.98790 * 15 14 11
42 42 H 1.08997 * 109.47565 * 303.00512 * 16 14 11
43 43 H 1.09000 * 109.47062 * 63.01398 * 16 14 11
44 44 H 0.97005 * 120.00054 * 0.02562 * 17 16 14
45 45 H 0.97003 * 119.99895 * 180.02562 * 21 20 18
46 46 H 1.09003 * 110.40594 * 338.36945 * 26 9 7
47 47 H 1.08993 * 110.41029 * 100.80023 * 26 9 7
48 48 H 1.08000 * 119.81860 * 180.22442 * 27 6 4
49 49 H 1.09000 * 109.47098 * 263.70980 * 29 28 27
50 50 H 1.08996 * 109.47187 * 23.71570 * 29 28 27
51 51 H 1.09006 * 109.46915 * 143.71156 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1629 1.1784 0.0000
4 6 3.5796 1.1843 0.0006
5 8 4.2052 2.2327 0.0010
6 6 4.2724 -0.1133 -0.0052
7 6 5.7436 -0.1847 -0.0110
8 8 6.3915 0.5627 0.6967
9 7 6.3718 -1.0783 -0.8004
10 6 5.7621 -2.1354 -1.6404
11 6 6.6031 -2.1279 -2.9399
12 1 6.7297 -3.1446 -3.3121
13 6 5.9412 -1.2512 -4.0049
14 6 7.9661 -1.5341 -2.5276
15 6 8.2427 -0.2466 -3.3064
16 6 9.0835 -2.5517 -2.7658
17 7 10.3572 -1.9958 -2.3019
18 6 11.5065 -2.7319 -2.4132
19 1 11.4742 -3.7220 -2.8432
20 6 12.7132 -2.2053 -1.9732
21 7 12.7525 -0.9989 -1.4486
22 14 14.2812 -3.2092 -2.1256
23 1 14.5284 -3.5272 -3.5548
24 1 15.4234 -2.4279 -1.5871
25 1 14.1381 -4.4708 -1.3554
26 6 7.8289 -1.2306 -1.0200
27 6 3.5077 -1.2618 0.0006
28 7 2.1663 -1.1847 0.0004
29 6 1.3880 -2.4258 0.0003
30 1 -0.3634 -0.1095 -1.0217
31 1 -0.3633 -0.8301 0.6058
32 1 -0.3633 0.9397 0.4160
33 1 1.6137 2.1083 -0.0004
34 1 5.8332 -3.1033 -1.1443
35 1 4.7216 -1.8947 -1.8585
36 1 6.5854 -1.1969 -4.8824
37 1 4.9806 -1.6833 -4.2855
38 1 5.7860 -0.2490 -3.6054
39 1 9.1823 0.1890 -2.9664
40 1 8.3112 -0.4730 -4.3704
41 1 7.4317 0.4618 -3.1373
42 1 8.8648 -3.4669 -2.2158
43 1 9.1509 -2.7748 -3.8305
44 1 10.3862 -1.1066 -1.9153
45 1 13.5959 -0.6309 -1.1415
46 1 8.3496 -0.3063 -0.7695
47 1 8.2179 -2.0593 -0.4286
48 1 3.9899 -2.2281 0.0003
49 1 1.0997 -2.6738 -1.0212
50 1 1.9920 -3.2335 0.4137
51 1 0.4931 -2.2934 0.6085
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001181793435.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:23
Heat of formation + Delta-G solvation = -8.905876 kcal
Electronic energy + Delta-G solvation = -31720.351048 eV
Core-core repulsion = 27621.118081 eV
Total energy + Delta-G solvation = -4099.232968 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.53578 -40.06431 -38.39382 -37.49858 -34.78657 -33.85086 -33.17804 -32.58833
-31.44661 -29.65537 -28.76683 -27.36402 -27.11957 -25.52005 -25.46037 -24.30500
-23.12582 -21.93814 -21.15685 -19.85139 -18.52811 -18.10902 -17.56397 -16.89854
-16.69435 -16.45179 -15.96964 -15.70820 -15.18297 -14.52111 -14.47824 -14.24047
-14.15257 -13.99189 -13.91592 -13.65289 -13.54352 -13.44968 -13.26982 -12.99716
-12.90475 -12.81715 -12.45886 -12.40665 -12.25270 -12.09217 -11.87065 -11.44815
-11.22202 -11.19039 -10.94660 -10.75759 -10.39433 -10.26626 -10.16804 -9.93745
-9.83555 -9.72129 -9.55681 -9.30313 -8.82220 -8.47732 -8.15747 -6.86157
-5.69570 -2.98788 0.70323 1.03169 1.98933 2.89188 3.12180 3.47822
3.51858 3.53819 3.63790 3.73011 4.02201 4.17361 4.32325 4.41021
4.54625 4.60235 4.63254 4.70188 4.77105 4.83281 4.88875 4.94016
5.05693 5.21344 5.31846 5.38017 5.41022 5.48266 5.50783 5.56010
5.61826 5.70144 5.84899 5.95408 6.00809 6.02992 6.16943 6.23257
6.25580 6.28012 6.31835 6.38681 6.47175 6.51177 6.67958 6.75545
6.83130 6.94530 7.74178 7.77664 8.02058 8.45427 8.48683 9.59685
10.17832 10.52157 11.52914
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019851 B = 0.002506 C = 0.002414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1410.164651 B =11171.420030 C =11594.051528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.156 3.844
3 C -0.271 4.271
4 C 0.410 3.590
5 O -0.489 6.489
6 C -0.283 4.283
7 C 0.596 3.404
8 O -0.515 6.515
9 N -0.621 5.621
10 C 0.098 3.902
11 C -0.096 4.096
12 H 0.087 0.913
13 C -0.141 4.141
14 C -0.075 4.075
15 C -0.132 4.132
16 C 0.170 3.830
17 N -0.730 5.730
18 C -0.241 4.241
19 H 0.069 0.931
20 C -0.013 4.013
21 N -0.930 5.930
22 Si 0.906 3.094
23 H -0.287 1.287
24 H -0.291 1.291
25 H -0.287 1.287
26 C 0.123 3.877
27 C 0.162 3.838
28 N -0.473 5.473
29 C 0.049 3.951
30 H 0.088 0.912
31 H 0.080 0.920
32 H 0.092 0.908
33 H 0.152 0.848
34 H 0.072 0.928
35 H 0.073 0.927
36 H 0.063 0.937
37 H 0.046 0.954
38 H 0.058 0.942
39 H 0.066 0.934
40 H 0.055 0.945
41 H 0.049 0.951
42 H 0.019 0.981
43 H 0.022 0.978
44 H 0.386 0.614
45 H 0.256 0.744
46 H 0.085 0.915
47 H 0.078 0.922
48 H 0.169 0.831
49 H 0.083 0.917
50 H 0.093 0.907
51 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.035 -6.207 -0.333 33.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.050 3.950
3 C -0.295 4.295
4 C 0.296 3.704
5 O -0.370 6.370
6 C -0.294 4.294
7 C 0.384 3.616
8 O -0.390 6.390
9 N -0.356 5.356
10 C -0.025 4.025
11 C -0.116 4.116
12 H 0.105 0.895
13 C -0.199 4.199
14 C -0.076 4.076
15 C -0.189 4.189
16 C 0.042 3.958
17 N -0.375 5.375
18 C -0.373 4.373
19 H 0.087 0.913
20 C -0.209 4.209
21 N -0.579 5.579
22 Si 0.737 3.263
23 H -0.214 1.214
24 H -0.217 1.217
25 H -0.214 1.214
26 C 0.001 3.999
27 C 0.033 3.967
28 N -0.161 5.161
29 C -0.092 4.092
30 H 0.107 0.893
31 H 0.099 0.901
32 H 0.111 0.889
33 H 0.170 0.830
34 H 0.090 0.910
35 H 0.091 0.909
36 H 0.082 0.918
37 H 0.065 0.935
38 H 0.077 0.923
39 H 0.085 0.915
40 H 0.074 0.926
41 H 0.068 0.932
42 H 0.037 0.963
43 H 0.039 0.961
44 H 0.220 0.780
45 H 0.066 0.934
46 H 0.104 0.896
47 H 0.096 0.904
48 H 0.186 0.814
49 H 0.101 0.899
50 H 0.111 0.889
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -32.394 -5.421 0.112 32.845
hybrid contribution 0.931 -0.536 0.016 1.074
sum -31.463 -5.956 0.129 32.022
Atomic orbital electron populations
1.21180 0.88069 1.05041 1.04076 1.20253 0.94821 0.85002 0.94893
1.22221 0.96127 0.97235 1.13925 1.18144 0.88342 0.87671 0.76198
1.90824 1.70033 1.33356 1.42824 1.22479 0.94311 0.95234 1.17386
1.17027 0.85674 0.79445 0.79470 1.90848 1.66634 1.41203 1.40295
1.48945 1.08804 1.32793 1.45032 1.22700 0.97499 0.90877 0.91438
1.22182 0.94628 1.00354 0.94392 0.89489 1.21894 0.99438 0.99925
0.98594 1.21707 0.94362 0.97137 0.94384 1.21863 1.01777 0.95776
0.99517 1.20698 0.85281 0.93064 0.96804 1.42393 1.01970 1.18953
1.74214 1.19141 0.85942 0.98105 1.34064 0.91340 1.24742 0.97726
0.96770 1.01644 1.69648 1.25650 1.15804 1.46768 0.86288 0.83369
0.79080 0.77530 1.21359 1.21741 1.21363 1.22458 0.79221 1.03082
0.95151 1.22258 0.81947 0.99998 0.92545 1.42533 1.05223 1.07129
1.61173 1.22529 0.97784 0.84416 1.04469 0.89317 0.90149 0.88883
0.83028 0.90988 0.90893 0.91786 0.93466 0.92295 0.91549 0.92561
0.93214 0.96319 0.96055 0.77989 0.93407 0.89606 0.90394 0.81361
0.89882 0.88859 0.88884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.24 9.34 36.00 0.34 0.10 16
2 C 0.16 0.97 6.64 -82.13 -0.55 0.42 16
3 C -0.27 -2.79 9.57 -39.47 -0.38 -3.16 16
4 C 0.41 6.45 6.94 -34.68 -0.24 6.21 16
5 O -0.49 -10.26 17.13 -3.62 -0.06 -10.32 16
6 C -0.28 -3.97 5.62 -102.72 -0.58 -4.55 16
7 C 0.60 10.67 7.39 -12.58 -0.09 10.57 16
8 O -0.52 -11.98 16.83 -3.20 -0.05 -12.04 16
9 N -0.62 -9.55 3.31 -170.37 -0.56 -10.11 16
10 C 0.10 1.05 5.09 -2.19 -0.01 1.03 16
11 C -0.10 -1.15 3.30 -89.00 -0.29 -1.44 16
12 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16
13 C -0.14 -1.57 7.95 37.15 0.30 -1.27 16
14 C -0.07 -1.21 0.73 -153.11 -0.11 -1.33 16
15 C -0.13 -2.27 7.08 37.15 0.26 -2.01 16
16 C 0.17 3.31 4.85 -4.04 -0.02 3.29 16
17 N -0.73 -18.40 5.12 -59.91 -0.31 -18.71 16
18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16
19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16
21 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16
22 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
26 C 0.12 2.19 5.53 -2.41 -0.01 2.18 16
27 C 0.16 1.33 8.07 -16.54 -0.13 1.19 16
28 N -0.47 -2.52 2.97 -119.75 -0.36 -2.88 16
29 C 0.05 0.03 9.97 59.85 0.60 0.62 16
30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16
31 H 0.08 0.00 6.02 -51.93 -0.31 -0.32 16
32 H 0.09 0.15 7.97 -51.93 -0.41 -0.27 16
33 H 0.15 1.34 8.01 -52.48 -0.42 0.92 16
34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.61 5.72 -51.92 -0.30 0.32 16
36 H 0.06 0.73 6.89 -51.93 -0.36 0.37 16
37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.06 0.75 6.72 -51.93 -0.35 0.41 16
39 H 0.07 1.34 7.01 -51.93 -0.36 0.97 16
40 H 0.06 0.90 6.98 -51.93 -0.36 0.54 16
41 H 0.05 0.83 6.62 -51.93 -0.34 0.49 16
42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
44 H 0.39 10.40 6.28 -40.82 -0.26 10.14 16
45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
46 H 0.09 1.82 7.65 -51.93 -0.40 1.42 16
47 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16
48 H 0.17 0.93 6.42 -52.49 -0.34 0.60 16
49 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16
50 H 0.09 -0.05 7.85 -51.93 -0.41 -0.46 16
51 H 0.09 -0.10 5.96 -51.93 -0.31 -0.41 16
LS Contribution 399.49 15.07 6.02 6.02
Total: -1.00 -41.23 399.49 -8.61 -49.84
By element:
Atomic # 1 Polarization: 11.91 SS G_CDS: -7.82 Total: 4.10 kcal
Atomic # 6 Polarization: 5.66 SS G_CDS: -1.17 Total: 4.49 kcal
Atomic # 7 Polarization: -59.30 SS G_CDS: -0.50 Total: -59.80 kcal
Atomic # 8 Polarization: -22.25 SS G_CDS: -0.12 Total: -22.36 kcal
Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -41.23 -8.61 -49.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001181793435.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.933 kcal
(2) G-P(sol) polarization free energy of solvation -41.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds