Wall clock time and date at job start Wed Apr 1 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34866 * 119.10414 * 2 1 4 4 C 1.41665 * 119.34300 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06630 * 180.02562 * 4 3 2 6 6 C 1.47097 * 117.86194 * 0.27618 * 4 3 2 7 7 C 1.47291 * 120.88300 * 179.72787 * 6 4 3 8 8 O 1.21621 * 119.99730 * 42.26075 * 7 6 4 9 9 N 1.34768 * 120.00348 * 222.26207 * 7 6 4 10 10 C 1.48150 * 127.83474 * 354.62061 * 9 7 6 11 11 C 1.54797 * 104.41531 * 140.36560 * 10 9 7 12 12 H 1.09000 * 110.19606 * 142.94034 * 11 10 9 13 13 C 1.52993 * 110.61662 * 265.17900 * 11 10 9 14 14 C 1.54285 * 104.92044 * 24.16668 * 11 10 9 15 15 C 1.52991 * 110.34192 * 240.93533 * 14 11 10 16 16 C 1.53002 * 110.34079 * 118.67445 * 14 11 10 17 17 N 1.46502 * 109.47034 * 183.00679 * 16 14 11 18 18 C 1.36934 * 120.00226 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00054 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99828 * 180.02562 * 18 17 16 21 21 N 1.31610 * 120.00214 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99674 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47442 * 60.00028 * 22 20 18 24 24 H 1.48497 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47021 * 300.00167 * 22 20 18 26 26 C 1.48141 * 127.84209 * 174.94131 * 9 7 6 27 27 C 1.37985 * 118.23773 * 359.46660 * 6 4 3 28 28 N 1.34353 * 120.36920 * 0.52844 * 27 6 4 29 29 C 1.46499 * 118.80337 * 179.71939 * 28 27 6 30 30 H 1.08997 * 109.47613 * 96.11851 * 1 2 3 31 31 H 1.09001 * 109.47158 * 216.11895 * 1 2 3 32 32 H 1.08998 * 109.47070 * 336.11958 * 1 2 3 33 33 H 1.08006 * 120.32880 * 359.97438 * 3 2 1 34 34 H 1.08994 * 110.40770 * 259.19861 * 10 9 7 35 35 H 1.09007 * 110.41001 * 21.63367 * 10 9 7 36 36 H 1.08994 * 109.47333 * 175.65033 * 13 11 10 37 37 H 1.09007 * 109.47166 * 295.64822 * 13 11 10 38 38 H 1.09002 * 109.47259 * 55.64640 * 13 11 10 39 39 H 1.09004 * 109.47357 * 176.99249 * 15 14 11 40 40 H 1.09004 * 109.47553 * 296.98914 * 15 14 11 41 41 H 1.08997 * 109.47775 * 56.98790 * 15 14 11 42 42 H 1.08997 * 109.47565 * 303.00512 * 16 14 11 43 43 H 1.09000 * 109.47062 * 63.01398 * 16 14 11 44 44 H 0.97005 * 120.00054 * 0.02562 * 17 16 14 45 45 H 0.97003 * 119.99895 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.40594 * 338.36945 * 26 9 7 47 47 H 1.08993 * 110.41029 * 100.80023 * 26 9 7 48 48 H 1.08000 * 119.81860 * 180.22442 * 27 6 4 49 49 H 1.09000 * 109.47098 * 263.70980 * 29 28 27 50 50 H 1.08996 * 109.47187 * 23.71570 * 29 28 27 51 51 H 1.09006 * 109.46915 * 143.71156 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2724 -0.1133 -0.0052 7 6 5.7436 -0.1847 -0.0110 8 8 6.3915 0.5627 0.6967 9 7 6.3718 -1.0783 -0.8004 10 6 5.7621 -2.1354 -1.6404 11 6 6.6031 -2.1279 -2.9399 12 1 6.7297 -3.1446 -3.3121 13 6 5.9412 -1.2512 -4.0049 14 6 7.9661 -1.5341 -2.5276 15 6 8.2427 -0.2466 -3.3064 16 6 9.0835 -2.5517 -2.7658 17 7 10.3572 -1.9958 -2.3019 18 6 11.5065 -2.7319 -2.4132 19 1 11.4742 -3.7220 -2.8432 20 6 12.7132 -2.2053 -1.9732 21 7 12.7525 -0.9989 -1.4486 22 14 14.2812 -3.2092 -2.1256 23 1 14.5284 -3.5272 -3.5548 24 1 15.4234 -2.4279 -1.5871 25 1 14.1381 -4.4708 -1.3554 26 6 7.8289 -1.2306 -1.0200 27 6 3.5077 -1.2618 0.0006 28 7 2.1663 -1.1847 0.0004 29 6 1.3880 -2.4258 0.0003 30 1 -0.3634 -0.1095 -1.0217 31 1 -0.3633 -0.8301 0.6058 32 1 -0.3633 0.9397 0.4160 33 1 1.6137 2.1083 -0.0004 34 1 5.8332 -3.1033 -1.1443 35 1 4.7216 -1.8947 -1.8585 36 1 6.5854 -1.1969 -4.8824 37 1 4.9806 -1.6833 -4.2855 38 1 5.7860 -0.2490 -3.6054 39 1 9.1823 0.1890 -2.9664 40 1 8.3112 -0.4730 -4.3704 41 1 7.4317 0.4618 -3.1373 42 1 8.8648 -3.4669 -2.2158 43 1 9.1509 -2.7748 -3.8305 44 1 10.3862 -1.1066 -1.9153 45 1 13.5959 -0.6309 -1.1415 46 1 8.3496 -0.3063 -0.7695 47 1 8.2179 -2.0593 -0.4286 48 1 3.9899 -2.2281 0.0003 49 1 1.0997 -2.6738 -1.0212 50 1 1.9920 -3.2335 0.4137 51 1 0.4931 -2.2934 0.6085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181793435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:22 Heat of formation + Delta-G solvation = -40.057990 kcal Electronic energy + Delta-G solvation = -31721.701905 eV Core-core repulsion = 27621.118081 eV Total energy + Delta-G solvation = -4100.583825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.31581 -41.24234 -39.56111 -38.75109 -36.49596 -34.89750 -34.17343 -33.51578 -33.05159 -31.24089 -29.52959 -28.39759 -27.68178 -26.98662 -26.69605 -25.36858 -24.71132 -22.83974 -22.39400 -20.88023 -19.87465 -19.31955 -18.77985 -18.16925 -17.49629 -17.29919 -17.02365 -16.75089 -16.42949 -16.27164 -15.62811 -15.39163 -15.35458 -15.25027 -14.92677 -14.73043 -14.66923 -14.34434 -14.22637 -13.88742 -13.82758 -13.80753 -13.46998 -13.36111 -13.13502 -13.03911 -12.84285 -12.68142 -12.59891 -12.52573 -12.47402 -12.40814 -12.14049 -11.94763 -11.51512 -11.41509 -11.23576 -11.20266 -10.90216 -10.48062 -10.41556 -9.77563 -9.06166 -8.96447 -7.91609 -5.20812 -0.14161 0.29897 1.44673 1.46553 1.50661 1.56832 1.62639 1.97195 2.57704 2.65199 3.25144 3.35082 3.42093 3.52764 3.59216 3.63223 3.78113 3.81286 4.09843 4.18861 4.24487 4.25925 4.28760 4.34789 4.46048 4.49998 4.50969 4.59646 4.68862 4.73322 4.75707 4.77068 4.81650 4.84733 4.87646 4.89861 4.99092 5.03480 5.06940 5.12229 5.18956 5.25269 5.31301 5.36119 5.43997 5.52566 5.58277 5.72202 5.80390 6.28979 6.56124 7.03672 7.16832 7.34994 8.13255 8.34389 9.32195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002506 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.164651 B =11171.420030 C =11594.051528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.193 3.807 3 C -0.307 4.307 4 C 0.383 3.617 5 O -0.585 6.585 6 C -0.340 4.340 7 C 0.588 3.412 8 O -0.595 6.595 9 N -0.616 5.616 10 C 0.095 3.905 11 C -0.087 4.087 12 H 0.119 0.881 13 C -0.139 4.139 14 C -0.067 4.067 15 C -0.123 4.123 16 C 0.169 3.831 17 N -0.747 5.747 18 C -0.238 4.238 19 H 0.083 0.917 20 C -0.083 4.083 21 N -0.976 5.976 22 Si 0.976 3.024 23 H -0.275 1.275 24 H -0.302 1.302 25 H -0.275 1.275 26 C 0.126 3.874 27 C 0.214 3.786 28 N -0.454 5.454 29 C 0.031 3.969 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.031 0.969 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.370 0.630 45 H 0.248 0.752 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.210 0.790 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.408 -12.196 -1.954 40.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.475 6.475 6 C -0.350 4.350 7 C 0.380 3.620 8 O -0.476 6.476 9 N -0.349 5.349 10 C -0.026 4.026 11 C -0.107 4.107 12 H 0.137 0.863 13 C -0.196 4.196 14 C -0.068 4.068 15 C -0.180 4.180 16 C 0.043 3.957 17 N -0.389 5.389 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.275 4.275 21 N -0.627 5.627 22 Si 0.805 3.195 23 H -0.201 1.201 24 H -0.229 1.229 25 H -0.201 1.201 26 C 0.003 3.997 27 C 0.080 3.920 28 N -0.137 5.137 29 C -0.107 4.107 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.227 0.773 49 H 0.130 0.870 50 H 0.134 0.866 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -37.898 -11.550 -1.571 39.651 hybrid contribution 2.332 1.115 0.487 2.630 sum -35.567 -10.436 -1.084 37.082 Atomic orbital electron populations 1.21414 0.83669 1.06810 1.06284 1.20846 0.97098 0.83811 0.89743 1.22057 0.93517 0.99691 1.17732 1.18982 0.90633 0.87424 0.75160 1.90764 1.71946 1.35934 1.48843 1.21982 0.92213 0.96789 1.24065 1.17767 0.87443 0.78381 0.78438 1.90782 1.68688 1.44296 1.43823 1.48964 1.07687 1.33458 1.44803 1.23141 0.98598 0.90790 0.90034 1.22233 0.91375 1.01624 0.95435 0.86312 1.21870 1.01234 0.98598 0.97869 1.21600 0.96471 0.95949 0.92784 1.21765 0.99391 0.96445 1.00436 1.20910 0.83705 0.94030 0.97062 1.42683 1.03637 1.18363 1.74264 1.19650 0.86804 0.98466 1.32076 0.89900 1.25644 1.01353 0.97971 1.02532 1.69859 1.25814 1.17996 1.49030 0.85170 0.78834 0.77579 0.77928 1.20101 1.22880 1.20077 1.22185 0.81032 0.99982 0.96525 1.22607 0.82937 0.99237 0.87208 1.43215 1.04689 1.09107 1.56650 1.23164 0.98391 0.81896 1.07222 0.86777 0.86719 0.88577 0.82835 0.87122 0.87597 0.92146 0.89628 0.94939 0.95860 0.90957 0.93515 0.94641 0.94968 0.79781 0.94307 0.95025 0.91210 0.77317 0.86979 0.86603 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.30 9.34 71.23 0.67 0.96 16 2 C 0.19 1.63 6.64 41.20 0.27 1.90 16 3 C -0.31 -6.40 9.57 22.34 0.21 -6.18 16 4 C 0.38 13.31 6.94 25.44 0.18 13.49 16 5 O -0.58 -28.44 17.13 2.49 0.04 -28.40 16 6 C -0.34 -9.81 5.62 -18.63 -0.10 -9.92 16 7 C 0.59 22.90 7.39 86.63 0.64 23.54 16 8 O -0.60 -31.55 16.83 3.99 0.07 -31.48 16 9 N -0.62 -19.47 3.31 -811.17 -2.69 -22.16 16 10 C 0.10 1.65 5.09 86.68 0.44 2.09 16 11 C -0.09 -1.79 3.30 -9.75 -0.03 -1.83 16 12 H 0.12 1.83 7.71 -2.39 -0.02 1.81 16 13 C -0.14 -2.65 7.95 71.98 0.57 -2.08 16 14 C -0.07 -2.19 0.73 -51.28 -0.04 -2.23 16 15 C -0.12 -4.53 7.08 71.98 0.51 -4.02 16 16 C 0.17 6.47 4.85 86.38 0.42 6.89 16 17 N -0.75 -38.85 5.12 -343.45 -1.76 -40.61 16 18 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.08 -4.97 5.50 84.86 0.47 -4.51 16 21 N -0.98 -63.59 13.06 21.65 0.28 -63.30 16 22 Si 0.98 47.61 29.55 68.60 2.03 49.63 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 C 0.13 4.84 5.53 86.54 0.48 5.32 16 27 C 0.21 2.66 8.07 84.25 0.68 3.34 16 28 N -0.45 -2.20 2.97 -532.77 -1.58 -3.78 16 29 C 0.03 -0.23 9.97 127.77 1.27 1.04 16 30 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.11 -0.94 6.02 -2.39 -0.01 -0.96 16 32 H 0.10 -0.13 7.97 -2.39 -0.02 -0.15 16 33 H 0.15 2.94 8.01 -2.91 -0.02 2.92 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.16 5.72 -2.38 -0.01 1.15 16 36 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.03 0.80 6.72 -2.39 -0.02 0.78 16 39 H 0.02 1.02 7.01 -2.39 -0.02 1.01 16 40 H 0.07 2.37 6.98 -2.38 -0.02 2.35 16 41 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.37 21.47 6.28 -92.70 -0.58 20.89 16 45 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.03 1.53 7.65 -2.39 -0.02 1.51 16 47 H 0.07 2.74 7.86 -2.39 -0.02 2.72 16 48 H 0.21 0.92 6.42 -2.91 -0.02 0.91 16 49 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 50 H 0.12 -1.19 7.85 -2.39 -0.02 -1.21 16 51 H 0.12 -1.35 5.96 -2.38 -0.01 -1.36 16 Total: -1.00 -110.28 399.49 4.24 -106.04 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.37 Total: 18.88 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.48 Total: 15.17 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.75 Total: -129.85 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: 0.11 Total: -59.89 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -110.28 4.24 -106.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181793435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.982 kcal (2) G-P(sol) polarization free energy of solvation -110.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds