Wall clock time and date at job start Wed Apr 1 2020 04:26:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.34866 * 119.10414 * 2 1
4 4 C 1.41665 * 119.34300 * 179.97438 * 3 2 1
5 5 O 1.22086 * 121.06630 * 180.02562 * 4 3 2
6 6 C 1.47097 * 117.86194 * 0.27618 * 4 3 2
7 7 C 1.47291 * 120.88300 * 179.72787 * 6 4 3
8 8 O 1.21621 * 119.99730 * 42.26075 * 7 6 4
9 9 N 1.34768 * 120.00348 * 222.26207 * 7 6 4
10 10 C 1.48150 * 127.83474 * 354.62061 * 9 7 6
11 11 C 1.54797 * 104.41531 * 140.36560 * 10 9 7
12 12 H 1.09000 * 110.19606 * 142.94034 * 11 10 9
13 13 C 1.52993 * 110.61662 * 265.17900 * 11 10 9
14 14 C 1.54285 * 104.92044 * 24.16668 * 11 10 9
15 15 C 1.52991 * 110.34192 * 240.93533 * 14 11 10
16 16 C 1.53002 * 110.34079 * 118.67445 * 14 11 10
17 17 N 1.46502 * 109.47034 * 183.00679 * 16 14 11
18 18 C 1.36934 * 120.00226 * 179.97438 * 17 16 14
19 19 H 1.07997 * 120.00054 * 0.02562 * 18 17 16
20 20 C 1.38816 * 119.99828 * 180.02562 * 18 17 16
21 21 N 1.31610 * 120.00214 * 0.02562 * 20 18 17
22 22 Si 1.86804 * 119.99674 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47442 * 60.00028 * 22 20 18
24 24 H 1.48497 * 109.47061 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47021 * 300.00167 * 22 20 18
26 26 C 1.48141 * 127.84209 * 174.94131 * 9 7 6
27 27 C 1.37985 * 118.23773 * 359.46660 * 6 4 3
28 28 N 1.34353 * 120.36920 * 0.52844 * 27 6 4
29 29 C 1.46499 * 118.80337 * 179.71939 * 28 27 6
30 30 H 1.08997 * 109.47613 * 96.11851 * 1 2 3
31 31 H 1.09001 * 109.47158 * 216.11895 * 1 2 3
32 32 H 1.08998 * 109.47070 * 336.11958 * 1 2 3
33 33 H 1.08006 * 120.32880 * 359.97438 * 3 2 1
34 34 H 1.08994 * 110.40770 * 259.19861 * 10 9 7
35 35 H 1.09007 * 110.41001 * 21.63367 * 10 9 7
36 36 H 1.08994 * 109.47333 * 175.65033 * 13 11 10
37 37 H 1.09007 * 109.47166 * 295.64822 * 13 11 10
38 38 H 1.09002 * 109.47259 * 55.64640 * 13 11 10
39 39 H 1.09004 * 109.47357 * 176.99249 * 15 14 11
40 40 H 1.09004 * 109.47553 * 296.98914 * 15 14 11
41 41 H 1.08997 * 109.47775 * 56.98790 * 15 14 11
42 42 H 1.08997 * 109.47565 * 303.00512 * 16 14 11
43 43 H 1.09000 * 109.47062 * 63.01398 * 16 14 11
44 44 H 0.97005 * 120.00054 * 0.02562 * 17 16 14
45 45 H 0.97003 * 119.99895 * 180.02562 * 21 20 18
46 46 H 1.09003 * 110.40594 * 338.36945 * 26 9 7
47 47 H 1.08993 * 110.41029 * 100.80023 * 26 9 7
48 48 H 1.08000 * 119.81860 * 180.22442 * 27 6 4
49 49 H 1.09000 * 109.47098 * 263.70980 * 29 28 27
50 50 H 1.08996 * 109.47187 * 23.71570 * 29 28 27
51 51 H 1.09006 * 109.46915 * 143.71156 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1629 1.1784 0.0000
4 6 3.5796 1.1843 0.0006
5 8 4.2052 2.2327 0.0010
6 6 4.2724 -0.1133 -0.0052
7 6 5.7436 -0.1847 -0.0110
8 8 6.3915 0.5627 0.6967
9 7 6.3718 -1.0783 -0.8004
10 6 5.7621 -2.1354 -1.6404
11 6 6.6031 -2.1279 -2.9399
12 1 6.7297 -3.1446 -3.3121
13 6 5.9412 -1.2512 -4.0049
14 6 7.9661 -1.5341 -2.5276
15 6 8.2427 -0.2466 -3.3064
16 6 9.0835 -2.5517 -2.7658
17 7 10.3572 -1.9958 -2.3019
18 6 11.5065 -2.7319 -2.4132
19 1 11.4742 -3.7220 -2.8432
20 6 12.7132 -2.2053 -1.9732
21 7 12.7525 -0.9989 -1.4486
22 14 14.2812 -3.2092 -2.1256
23 1 14.5284 -3.5272 -3.5548
24 1 15.4234 -2.4279 -1.5871
25 1 14.1381 -4.4708 -1.3554
26 6 7.8289 -1.2306 -1.0200
27 6 3.5077 -1.2618 0.0006
28 7 2.1663 -1.1847 0.0004
29 6 1.3880 -2.4258 0.0003
30 1 -0.3634 -0.1095 -1.0217
31 1 -0.3633 -0.8301 0.6058
32 1 -0.3633 0.9397 0.4160
33 1 1.6137 2.1083 -0.0004
34 1 5.8332 -3.1033 -1.1443
35 1 4.7216 -1.8947 -1.8585
36 1 6.5854 -1.1969 -4.8824
37 1 4.9806 -1.6833 -4.2855
38 1 5.7860 -0.2490 -3.6054
39 1 9.1823 0.1890 -2.9664
40 1 8.3112 -0.4730 -4.3704
41 1 7.4317 0.4618 -3.1373
42 1 8.8648 -3.4669 -2.2158
43 1 9.1509 -2.7748 -3.8305
44 1 10.3862 -1.1066 -1.9153
45 1 13.5959 -0.6309 -1.1415
46 1 8.3496 -0.3063 -0.7695
47 1 8.2179 -2.0593 -0.4286
48 1 3.9899 -2.2281 0.0003
49 1 1.0997 -2.6738 -1.0212
50 1 1.9920 -3.2335 0.4137
51 1 0.4931 -2.2934 0.6085
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001181793435.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:22
Heat of formation + Delta-G solvation = -40.057990 kcal
Electronic energy + Delta-G solvation = -31721.701905 eV
Core-core repulsion = 27621.118081 eV
Total energy + Delta-G solvation = -4100.583825 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.31581 -41.24234 -39.56111 -38.75109 -36.49596 -34.89750 -34.17343 -33.51578
-33.05159 -31.24089 -29.52959 -28.39759 -27.68178 -26.98662 -26.69605 -25.36858
-24.71132 -22.83974 -22.39400 -20.88023 -19.87465 -19.31955 -18.77985 -18.16925
-17.49629 -17.29919 -17.02365 -16.75089 -16.42949 -16.27164 -15.62811 -15.39163
-15.35458 -15.25027 -14.92677 -14.73043 -14.66923 -14.34434 -14.22637 -13.88742
-13.82758 -13.80753 -13.46998 -13.36111 -13.13502 -13.03911 -12.84285 -12.68142
-12.59891 -12.52573 -12.47402 -12.40814 -12.14049 -11.94763 -11.51512 -11.41509
-11.23576 -11.20266 -10.90216 -10.48062 -10.41556 -9.77563 -9.06166 -8.96447
-7.91609 -5.20812 -0.14161 0.29897 1.44673 1.46553 1.50661 1.56832
1.62639 1.97195 2.57704 2.65199 3.25144 3.35082 3.42093 3.52764
3.59216 3.63223 3.78113 3.81286 4.09843 4.18861 4.24487 4.25925
4.28760 4.34789 4.46048 4.49998 4.50969 4.59646 4.68862 4.73322
4.75707 4.77068 4.81650 4.84733 4.87646 4.89861 4.99092 5.03480
5.06940 5.12229 5.18956 5.25269 5.31301 5.36119 5.43997 5.52566
5.58277 5.72202 5.80390 6.28979 6.56124 7.03672 7.16832 7.34994
8.13255 8.34389 9.32195
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019851 B = 0.002506 C = 0.002414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1410.164651 B =11171.420030 C =11594.051528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.193 3.807
3 C -0.307 4.307
4 C 0.383 3.617
5 O -0.585 6.585
6 C -0.340 4.340
7 C 0.588 3.412
8 O -0.595 6.595
9 N -0.616 5.616
10 C 0.095 3.905
11 C -0.087 4.087
12 H 0.119 0.881
13 C -0.139 4.139
14 C -0.067 4.067
15 C -0.123 4.123
16 C 0.169 3.831
17 N -0.747 5.747
18 C -0.238 4.238
19 H 0.083 0.917
20 C -0.083 4.083
21 N -0.976 5.976
22 Si 0.976 3.024
23 H -0.275 1.275
24 H -0.302 1.302
25 H -0.275 1.275
26 C 0.126 3.874
27 C 0.214 3.786
28 N -0.454 5.454
29 C 0.031 3.969
30 H 0.114 0.886
31 H 0.115 0.885
32 H 0.095 0.905
33 H 0.154 0.846
34 H 0.111 0.889
35 H 0.106 0.894
36 H 0.060 0.940
37 H 0.085 0.915
38 H 0.031 0.969
39 H 0.022 0.978
40 H 0.072 0.928
41 H 0.046 0.954
42 H 0.036 0.964
43 H 0.032 0.968
44 H 0.370 0.630
45 H 0.248 0.752
46 H 0.031 0.969
47 H 0.070 0.930
48 H 0.210 0.790
49 H 0.112 0.888
50 H 0.115 0.885
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -38.408 -12.196 -1.954 40.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.085 3.915
3 C -0.330 4.330
4 C 0.278 3.722
5 O -0.475 6.475
6 C -0.350 4.350
7 C 0.380 3.620
8 O -0.476 6.476
9 N -0.349 5.349
10 C -0.026 4.026
11 C -0.107 4.107
12 H 0.137 0.863
13 C -0.196 4.196
14 C -0.068 4.068
15 C -0.180 4.180
16 C 0.043 3.957
17 N -0.389 5.389
18 C -0.370 4.370
19 H 0.101 0.899
20 C -0.275 4.275
21 N -0.627 5.627
22 Si 0.805 3.195
23 H -0.201 1.201
24 H -0.229 1.229
25 H -0.201 1.201
26 C 0.003 3.997
27 C 0.080 3.920
28 N -0.137 5.137
29 C -0.107 4.107
30 H 0.132 0.868
31 H 0.133 0.867
32 H 0.114 0.886
33 H 0.172 0.828
34 H 0.129 0.871
35 H 0.124 0.876
36 H 0.079 0.921
37 H 0.104 0.896
38 H 0.051 0.949
39 H 0.041 0.959
40 H 0.090 0.910
41 H 0.065 0.935
42 H 0.054 0.946
43 H 0.050 0.950
44 H 0.202 0.798
45 H 0.057 0.943
46 H 0.050 0.950
47 H 0.088 0.912
48 H 0.227 0.773
49 H 0.130 0.870
50 H 0.134 0.866
51 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -37.898 -11.550 -1.571 39.651
hybrid contribution 2.332 1.115 0.487 2.630
sum -35.567 -10.436 -1.084 37.082
Atomic orbital electron populations
1.21414 0.83669 1.06810 1.06284 1.20846 0.97098 0.83811 0.89743
1.22057 0.93517 0.99691 1.17732 1.18982 0.90633 0.87424 0.75160
1.90764 1.71946 1.35934 1.48843 1.21982 0.92213 0.96789 1.24065
1.17767 0.87443 0.78381 0.78438 1.90782 1.68688 1.44296 1.43823
1.48964 1.07687 1.33458 1.44803 1.23141 0.98598 0.90790 0.90034
1.22233 0.91375 1.01624 0.95435 0.86312 1.21870 1.01234 0.98598
0.97869 1.21600 0.96471 0.95949 0.92784 1.21765 0.99391 0.96445
1.00436 1.20910 0.83705 0.94030 0.97062 1.42683 1.03637 1.18363
1.74264 1.19650 0.86804 0.98466 1.32076 0.89900 1.25644 1.01353
0.97971 1.02532 1.69859 1.25814 1.17996 1.49030 0.85170 0.78834
0.77579 0.77928 1.20101 1.22880 1.20077 1.22185 0.81032 0.99982
0.96525 1.22607 0.82937 0.99237 0.87208 1.43215 1.04689 1.09107
1.56650 1.23164 0.98391 0.81896 1.07222 0.86777 0.86719 0.88577
0.82835 0.87122 0.87597 0.92146 0.89628 0.94939 0.95860 0.90957
0.93515 0.94641 0.94968 0.79781 0.94307 0.95025 0.91210 0.77317
0.86979 0.86603 0.86237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 0.30 9.34 71.23 0.67 0.96 16
2 C 0.19 1.63 6.64 41.20 0.27 1.90 16
3 C -0.31 -6.40 9.57 22.34 0.21 -6.18 16
4 C 0.38 13.31 6.94 25.44 0.18 13.49 16
5 O -0.58 -28.44 17.13 2.49 0.04 -28.40 16
6 C -0.34 -9.81 5.62 -18.63 -0.10 -9.92 16
7 C 0.59 22.90 7.39 86.63 0.64 23.54 16
8 O -0.60 -31.55 16.83 3.99 0.07 -31.48 16
9 N -0.62 -19.47 3.31 -811.17 -2.69 -22.16 16
10 C 0.10 1.65 5.09 86.68 0.44 2.09 16
11 C -0.09 -1.79 3.30 -9.75 -0.03 -1.83 16
12 H 0.12 1.83 7.71 -2.39 -0.02 1.81 16
13 C -0.14 -2.65 7.95 71.98 0.57 -2.08 16
14 C -0.07 -2.19 0.73 -51.28 -0.04 -2.23 16
15 C -0.12 -4.53 7.08 71.98 0.51 -4.02 16
16 C 0.17 6.47 4.85 86.38 0.42 6.89 16
17 N -0.75 -38.85 5.12 -343.45 -1.76 -40.61 16
18 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16
19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16
20 C -0.08 -4.97 5.50 84.86 0.47 -4.51 16
21 N -0.98 -63.59 13.06 21.65 0.28 -63.30 16
22 Si 0.98 47.61 29.55 68.60 2.03 49.63 16
23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
24 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16
25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
26 C 0.13 4.84 5.53 86.54 0.48 5.32 16
27 C 0.21 2.66 8.07 84.25 0.68 3.34 16
28 N -0.45 -2.20 2.97 -532.77 -1.58 -3.78 16
29 C 0.03 -0.23 9.97 127.77 1.27 1.04 16
30 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16
31 H 0.11 -0.94 6.02 -2.39 -0.01 -0.96 16
32 H 0.10 -0.13 7.97 -2.39 -0.02 -0.15 16
33 H 0.15 2.94 8.01 -2.91 -0.02 2.92 16
34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.11 1.16 5.72 -2.38 -0.01 1.15 16
36 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16
37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16
38 H 0.03 0.80 6.72 -2.39 -0.02 0.78 16
39 H 0.02 1.02 7.01 -2.39 -0.02 1.01 16
40 H 0.07 2.37 6.98 -2.38 -0.02 2.35 16
41 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16
42 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16
43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
44 H 0.37 21.47 6.28 -92.70 -0.58 20.89 16
45 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16
46 H 0.03 1.53 7.65 -2.39 -0.02 1.51 16
47 H 0.07 2.74 7.86 -2.39 -0.02 2.72 16
48 H 0.21 0.92 6.42 -2.91 -0.02 0.91 16
49 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16
50 H 0.12 -1.19 7.85 -2.39 -0.02 -1.21 16
51 H 0.12 -1.35 5.96 -2.38 -0.01 -1.36 16
Total: -1.00 -110.28 399.49 4.24 -106.04
By element:
Atomic # 1 Polarization: 18.51 SS G_CDS: 0.37 Total: 18.88 kcal
Atomic # 6 Polarization: 7.70 SS G_CDS: 7.48 Total: 15.17 kcal
Atomic # 7 Polarization: -124.10 SS G_CDS: -5.75 Total: -129.85 kcal
Atomic # 8 Polarization: -60.00 SS G_CDS: 0.11 Total: -59.89 kcal
Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal
Total: -110.28 4.24 -106.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001181793435.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.982 kcal
(2) G-P(sol) polarization free energy of solvation -110.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds