Wall clock time and date at job start Wed Apr 1 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34863 * 119.09974 * 2 1 4 4 C 1.41678 * 119.33733 * 180.28055 * 3 2 1 5 5 O 1.22081 * 121.06549 * 179.76739 * 4 3 2 6 6 C 1.47099 * 117.85963 * 359.48989 * 4 3 2 7 7 C 1.47291 * 120.87830 * 180.27218 * 6 4 3 8 8 O 1.21622 * 120.00109 * 39.65310 * 7 6 4 9 9 N 1.34778 * 119.99892 * 219.65346 * 7 6 4 10 10 C 1.46927 * 120.63051 * 4.55381 * 9 7 6 11 11 C 1.53632 * 108.53842 * 126.36966 * 10 9 7 12 12 C 1.53037 * 109.24102 * 54.85751 * 11 10 9 13 13 H 1.09003 * 109.46047 * 58.53238 * 12 11 10 14 14 C 1.52995 * 109.45766 * 178.48472 * 12 11 10 15 15 N 1.46496 * 109.47656 * 295.06781 * 14 12 11 16 16 C 1.36940 * 120.00228 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99785 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00206 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46991 * 89.99966 * 20 18 16 22 22 H 1.48492 * 109.47416 * 209.99996 * 20 18 16 23 23 H 1.48506 * 109.47441 * 330.00291 * 20 18 16 24 24 C 1.53033 * 109.53897 * 298.50941 * 12 11 10 25 25 H 1.08993 * 109.52469 * 301.39555 * 24 12 11 26 26 C 1.53003 * 109.50027 * 181.31741 * 24 12 11 27 27 C 1.46929 * 120.62800 * 184.84035 * 9 7 6 28 28 C 1.37988 * 118.23817 * 0.25431 * 6 4 3 29 29 N 1.34344 * 120.37029 * 0.02562 * 28 6 4 30 30 C 1.46500 * 118.80131 * 179.97438 * 29 28 6 31 31 H 1.09000 * 109.46878 * 264.31875 * 1 2 3 32 32 H 1.09007 * 109.47188 * 24.31762 * 1 2 3 33 33 H 1.09002 * 109.47274 * 144.31542 * 1 2 3 34 34 H 1.08001 * 120.33685 * 0.04577 * 3 2 1 35 35 H 1.08994 * 109.58840 * 246.20330 * 10 9 7 36 36 H 1.08996 * 109.58358 * 6.63512 * 10 9 7 37 37 H 1.08994 * 109.63598 * 294.86533 * 11 10 9 38 38 H 1.09004 * 109.45430 * 174.74454 * 11 10 9 39 39 H 1.09002 * 109.47136 * 55.07671 * 14 12 11 40 40 H 1.09005 * 109.47072 * 175.07150 * 14 12 11 41 41 H 0.96998 * 119.99845 * 0.02562 * 15 14 12 42 42 H 0.97007 * 119.99746 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46735 * 300.16598 * 26 24 12 44 44 H 1.09001 * 109.47208 * 60.15331 * 26 24 12 45 45 H 1.08996 * 109.47423 * 180.16092 * 26 24 12 46 46 H 1.09000 * 109.58614 * 353.36951 * 27 9 7 47 47 H 1.08991 * 109.58625 * 113.65567 * 27 9 7 48 48 H 1.07998 * 119.81252 * 180.02562 * 28 6 4 49 49 H 1.08999 * 109.47326 * 95.95082 * 30 29 28 50 50 H 1.08998 * 109.47134 * 215.95241 * 30 29 28 51 51 H 1.08996 * 109.47123 * 335.94705 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0060 5 8 4.2052 2.2326 -0.0105 6 6 4.2725 -0.1133 -0.0005 7 6 5.7436 -0.1847 -0.0003 8 8 6.3904 0.5986 0.6685 9 7 6.3731 -1.1182 -0.7412 10 6 5.6121 -2.0064 -1.6305 11 6 6.2113 -1.9144 -3.0421 12 6 7.7084 -2.2244 -2.9758 13 1 7.8549 -3.2203 -2.5575 14 6 8.3028 -2.1712 -4.3845 15 7 7.7203 -3.2388 -5.2011 16 6 8.1031 -3.3881 -6.5074 17 1 8.8348 -2.7190 -6.9356 18 6 7.5506 -4.3995 -7.2813 19 7 6.6586 -5.2146 -6.7597 20 14 8.0723 -4.6027 -9.0634 21 1 9.2362 -5.5221 -9.1367 22 1 6.9451 -5.1677 -9.8478 23 1 8.4505 -3.2799 -9.6225 24 6 8.4062 -1.1911 -2.0885 25 1 8.2399 -0.1925 -2.4924 26 6 9.9077 -1.4824 -2.0492 27 6 7.8327 -1.2711 -0.6702 28 6 3.5076 -1.2618 0.0048 29 7 2.1664 -1.1846 0.0044 30 6 1.3880 -2.4257 0.0096 31 1 -0.3633 -0.1017 1.0226 32 1 -0.3634 0.9365 -0.4232 33 1 -0.3634 -0.8347 -0.5995 34 1 1.6137 2.1084 0.0007 35 1 5.6799 -3.0320 -1.2679 36 1 4.5684 -1.6931 -1.6539 37 1 6.0651 -0.9091 -3.4373 38 1 5.7186 -2.6364 -3.6934 39 1 8.0797 -1.2048 -4.8368 40 1 9.3832 -2.3052 -4.3284 41 1 7.0628 -3.8396 -4.8167 42 1 6.2728 -5.9216 -7.3004 43 1 10.0735 -2.4816 -1.6464 44 1 10.3155 -1.4255 -3.0585 45 1 10.4039 -0.7479 -1.4149 46 1 8.2545 -0.4726 -0.0598 47 1 8.0778 -2.2369 -0.2286 48 1 3.9899 -2.2281 0.0094 49 1 1.1046 -2.6726 1.0327 50 1 0.4902 -2.2941 -0.5944 51 1 1.9900 -3.2339 -0.4058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184616783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:04 Heat of formation + Delta-G solvation = -18.001530 kcal Electronic energy + Delta-G solvation = -31416.043553 eV Core-core repulsion = 27316.416168 eV Total energy + Delta-G solvation = -4099.627385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60034 -39.96344 -38.26977 -37.47865 -35.00442 -34.09571 -33.40589 -32.64374 -31.89401 -30.27934 -28.85333 -27.27764 -26.90077 -26.31629 -24.62847 -23.54830 -22.43342 -22.10704 -21.25207 -20.13684 -19.35997 -18.20507 -17.46660 -17.10054 -16.69668 -16.45965 -15.99539 -15.68812 -15.00147 -14.79431 -14.59216 -14.40353 -13.99942 -13.93531 -13.92203 -13.81262 -13.57698 -13.51016 -13.35767 -13.09145 -12.82328 -12.77085 -12.54877 -12.49944 -12.24795 -12.13887 -11.85667 -11.74333 -11.55100 -10.98876 -10.87140 -10.79403 -10.35973 -10.26426 -10.15134 -9.99509 -9.95132 -9.62708 -9.61538 -9.32354 -8.86049 -8.51377 -8.14897 -6.90490 -5.78203 -3.05236 0.67657 1.04627 2.01339 2.79811 3.06393 3.42605 3.48200 3.49563 3.63478 3.75534 4.07994 4.19672 4.33421 4.47651 4.58519 4.61820 4.74380 4.81526 4.85763 4.88064 4.94925 5.02112 5.10728 5.13222 5.26206 5.32551 5.38190 5.43669 5.51488 5.55180 5.58898 5.77421 5.84952 5.91658 5.95065 6.00114 6.06877 6.12862 6.26232 6.29219 6.35305 6.38919 6.48555 6.53370 6.59010 6.67274 6.86825 6.97500 7.47873 7.70284 8.01829 8.32945 8.41761 9.53005 10.11561 10.46471 11.45001 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.002817 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.059122 B = 9935.643221 C =11585.615978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 C -0.271 4.271 4 C 0.411 3.589 5 O -0.492 6.492 6 C -0.296 4.296 7 C 0.581 3.419 8 O -0.524 6.524 9 N -0.610 5.610 10 C 0.097 3.903 11 C -0.125 4.125 12 C -0.087 4.087 13 H 0.071 0.929 14 C 0.155 3.845 15 N -0.732 5.732 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.936 5.936 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.098 4.098 25 H 0.074 0.926 26 C -0.146 4.146 27 C 0.121 3.879 28 C 0.169 3.831 29 N -0.472 5.472 30 C 0.047 3.953 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.025 0.975 41 H 0.382 0.618 42 H 0.254 0.746 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.173 0.827 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 3.294 17.970 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.298 3.702 5 O -0.374 6.374 6 C -0.307 4.307 7 C 0.369 3.631 8 O -0.399 6.399 9 N -0.344 5.344 10 C -0.026 4.026 11 C -0.163 4.163 12 C -0.106 4.106 13 H 0.090 0.910 14 C 0.028 3.972 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.585 5.585 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.118 4.118 25 H 0.092 0.908 26 C -0.204 4.204 27 C -0.001 4.001 28 C 0.039 3.961 29 N -0.159 5.159 30 C -0.094 4.094 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.084 0.916 48 H 0.190 0.810 49 H 0.100 0.900 50 H 0.114 0.886 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.106 4.155 18.175 23.379 hybrid contribution -0.043 -0.651 -1.073 1.255 sum -14.149 3.505 17.102 22.471 Atomic orbital electron populations 1.21196 0.87996 1.05190 1.04075 1.20281 0.94917 0.84983 0.94702 1.22233 0.96170 0.97247 1.13816 1.18127 0.88336 0.87660 0.76060 1.90803 1.70057 1.33380 1.43186 1.22420 0.94430 0.95231 1.18607 1.17503 0.86061 0.80007 0.79510 1.90786 1.66734 1.39698 1.42715 1.48056 1.07847 1.35468 1.43049 1.22235 0.95894 0.93442 0.91030 1.22000 0.96395 1.03148 0.94775 1.21318 0.94165 0.98414 0.96701 0.91025 1.20768 0.95732 0.92191 0.88501 1.42371 1.50436 1.34987 1.09789 1.19249 1.18692 1.11118 0.87534 0.91284 1.24699 0.99597 0.98478 0.98311 1.69648 1.32222 1.20714 1.35948 0.86203 0.77455 0.77659 0.84992 1.21777 1.21826 1.20796 1.21464 0.95477 1.00209 0.94657 0.90796 1.21826 0.94648 1.01290 1.02627 1.21674 0.78718 1.02223 0.97501 1.22386 0.82049 1.00156 0.91485 1.42590 1.05256 1.07296 1.60714 1.22575 0.98013 0.84352 1.04461 0.89348 0.88837 0.89962 0.83016 0.91156 0.90102 0.91653 0.89442 0.96517 0.95724 0.78396 0.93650 0.92568 0.91378 0.92951 0.89140 0.91554 0.80992 0.89964 0.88610 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.33 9.34 36.00 0.34 0.00 16 2 C 0.16 1.07 6.64 -82.13 -0.55 0.52 16 3 C -0.27 -2.86 9.57 -39.47 -0.38 -3.24 16 4 C 0.41 6.41 6.94 -34.68 -0.24 6.17 16 5 O -0.49 -10.10 17.06 -5.84 -0.10 -10.20 16 6 C -0.30 -4.03 5.34 -102.72 -0.55 -4.58 16 7 C 0.58 9.45 7.24 -12.58 -0.09 9.36 16 8 O -0.52 -10.72 15.85 -5.43 -0.09 -10.81 16 9 N -0.61 -8.39 2.97 -173.81 -0.52 -8.91 16 10 C 0.10 1.12 4.93 -3.48 -0.02 1.10 16 11 C -0.12 -1.85 5.26 -26.38 -0.14 -1.99 16 12 C -0.09 -1.37 1.73 -90.59 -0.16 -1.52 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.16 3.09 5.41 -4.05 -0.02 3.07 16 15 N -0.73 -18.01 5.32 -59.91 -0.32 -18.33 16 16 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -27.54 13.06 55.49 0.72 -26.82 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.10 -1.39 2.41 -90.50 -0.22 -1.61 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 C -0.15 -1.88 8.82 37.16 0.33 -1.55 16 27 C 0.12 1.63 5.72 -3.71 -0.02 1.61 16 28 C 0.17 1.42 7.63 -16.54 -0.13 1.30 16 29 N -0.47 -2.82 2.97 -119.75 -0.36 -3.17 16 30 C 0.05 0.08 9.98 59.85 0.60 0.67 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.22 7.98 -51.92 -0.41 -0.20 16 33 H 0.08 0.08 6.00 -51.93 -0.31 -0.23 16 34 H 0.15 1.38 8.01 -52.49 -0.42 0.96 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.08 0.82 4.61 -51.93 -0.24 0.58 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.50 6.14 -51.93 -0.32 0.18 16 41 H 0.38 9.68 6.84 -40.82 -0.28 9.40 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.17 0.99 6.32 -52.49 -0.33 0.66 16 49 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 50 H 0.10 0.01 5.94 -51.93 -0.31 -0.29 16 51 H 0.10 0.06 7.86 -51.93 -0.41 -0.35 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -39.69 398.23 -9.03 -48.72 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.87 Total: 4.17 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.49 Total: 2.13 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.47 Total: -57.23 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.19 Total: -21.01 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.69 -9.03 -48.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184616783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.722 kcal (2) G-P(sol) polarization free energy of solvation -39.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds