Wall clock time and date at job start Wed Apr 1 2020 04:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34863 * 119.09974 * 2 1 4 4 C 1.41678 * 119.33733 * 180.28055 * 3 2 1 5 5 O 1.22081 * 121.06549 * 179.76739 * 4 3 2 6 6 C 1.47099 * 117.85963 * 359.48989 * 4 3 2 7 7 C 1.47291 * 120.87830 * 180.27218 * 6 4 3 8 8 O 1.21622 * 120.00109 * 39.65310 * 7 6 4 9 9 N 1.34778 * 119.99892 * 219.65346 * 7 6 4 10 10 C 1.46927 * 120.63051 * 4.55381 * 9 7 6 11 11 C 1.53632 * 108.53842 * 126.36966 * 10 9 7 12 12 C 1.53037 * 109.24102 * 54.85751 * 11 10 9 13 13 H 1.09003 * 109.46047 * 58.53238 * 12 11 10 14 14 C 1.52995 * 109.45766 * 178.48472 * 12 11 10 15 15 N 1.46496 * 109.47656 * 295.06781 * 14 12 11 16 16 C 1.36940 * 120.00228 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99785 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00206 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46991 * 89.99966 * 20 18 16 22 22 H 1.48492 * 109.47416 * 209.99996 * 20 18 16 23 23 H 1.48506 * 109.47441 * 330.00291 * 20 18 16 24 24 C 1.53033 * 109.53897 * 298.50941 * 12 11 10 25 25 H 1.08993 * 109.52469 * 301.39555 * 24 12 11 26 26 C 1.53003 * 109.50027 * 181.31741 * 24 12 11 27 27 C 1.46929 * 120.62800 * 184.84035 * 9 7 6 28 28 C 1.37988 * 118.23817 * 0.25431 * 6 4 3 29 29 N 1.34344 * 120.37029 * 0.02562 * 28 6 4 30 30 C 1.46500 * 118.80131 * 179.97438 * 29 28 6 31 31 H 1.09000 * 109.46878 * 264.31875 * 1 2 3 32 32 H 1.09007 * 109.47188 * 24.31762 * 1 2 3 33 33 H 1.09002 * 109.47274 * 144.31542 * 1 2 3 34 34 H 1.08001 * 120.33685 * 0.04577 * 3 2 1 35 35 H 1.08994 * 109.58840 * 246.20330 * 10 9 7 36 36 H 1.08996 * 109.58358 * 6.63512 * 10 9 7 37 37 H 1.08994 * 109.63598 * 294.86533 * 11 10 9 38 38 H 1.09004 * 109.45430 * 174.74454 * 11 10 9 39 39 H 1.09002 * 109.47136 * 55.07671 * 14 12 11 40 40 H 1.09005 * 109.47072 * 175.07150 * 14 12 11 41 41 H 0.96998 * 119.99845 * 0.02562 * 15 14 12 42 42 H 0.97007 * 119.99746 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46735 * 300.16598 * 26 24 12 44 44 H 1.09001 * 109.47208 * 60.15331 * 26 24 12 45 45 H 1.08996 * 109.47423 * 180.16092 * 26 24 12 46 46 H 1.09000 * 109.58614 * 353.36951 * 27 9 7 47 47 H 1.08991 * 109.58625 * 113.65567 * 27 9 7 48 48 H 1.07998 * 119.81252 * 180.02562 * 28 6 4 49 49 H 1.08999 * 109.47326 * 95.95082 * 30 29 28 50 50 H 1.08998 * 109.47134 * 215.95241 * 30 29 28 51 51 H 1.08996 * 109.47123 * 335.94705 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0060 5 8 4.2052 2.2326 -0.0105 6 6 4.2725 -0.1133 -0.0005 7 6 5.7436 -0.1847 -0.0003 8 8 6.3904 0.5986 0.6685 9 7 6.3731 -1.1182 -0.7412 10 6 5.6121 -2.0064 -1.6305 11 6 6.2113 -1.9144 -3.0421 12 6 7.7084 -2.2244 -2.9758 13 1 7.8549 -3.2203 -2.5575 14 6 8.3028 -2.1712 -4.3845 15 7 7.7203 -3.2388 -5.2011 16 6 8.1031 -3.3881 -6.5074 17 1 8.8348 -2.7190 -6.9356 18 6 7.5506 -4.3995 -7.2813 19 7 6.6586 -5.2146 -6.7597 20 14 8.0723 -4.6027 -9.0634 21 1 9.2362 -5.5221 -9.1367 22 1 6.9451 -5.1677 -9.8478 23 1 8.4505 -3.2799 -9.6225 24 6 8.4062 -1.1911 -2.0885 25 1 8.2399 -0.1925 -2.4924 26 6 9.9077 -1.4824 -2.0492 27 6 7.8327 -1.2711 -0.6702 28 6 3.5076 -1.2618 0.0048 29 7 2.1664 -1.1846 0.0044 30 6 1.3880 -2.4257 0.0096 31 1 -0.3633 -0.1017 1.0226 32 1 -0.3634 0.9365 -0.4232 33 1 -0.3634 -0.8347 -0.5995 34 1 1.6137 2.1084 0.0007 35 1 5.6799 -3.0320 -1.2679 36 1 4.5684 -1.6931 -1.6539 37 1 6.0651 -0.9091 -3.4373 38 1 5.7186 -2.6364 -3.6934 39 1 8.0797 -1.2048 -4.8368 40 1 9.3832 -2.3052 -4.3284 41 1 7.0628 -3.8396 -4.8167 42 1 6.2728 -5.9216 -7.3004 43 1 10.0735 -2.4816 -1.6464 44 1 10.3155 -1.4255 -3.0585 45 1 10.4039 -0.7479 -1.4149 46 1 8.2545 -0.4726 -0.0598 47 1 8.0778 -2.2369 -0.2286 48 1 3.9899 -2.2281 0.0094 49 1 1.1046 -2.6726 1.0327 50 1 0.4902 -2.2941 -0.5944 51 1 1.9900 -3.2339 -0.4058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184616783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:03 Heat of formation + Delta-G solvation = -45.534125 kcal Electronic energy + Delta-G solvation = -31417.237456 eV Core-core repulsion = 27316.416168 eV Total energy + Delta-G solvation = -4100.821288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39295 -41.04468 -39.39241 -38.71132 -36.56485 -35.34469 -34.24240 -33.67042 -33.21704 -31.98220 -29.51156 -28.39886 -27.71745 -27.32169 -25.81354 -25.02022 -23.69951 -23.06190 -22.53024 -21.26630 -20.47970 -19.23818 -18.95384 -18.28846 -17.50949 -17.29348 -16.83083 -16.76323 -16.55398 -16.09091 -15.71259 -15.55384 -15.49893 -15.22305 -14.92288 -14.90988 -14.46246 -14.33890 -14.25319 -13.98650 -13.91615 -13.78354 -13.72229 -13.33273 -13.12065 -12.96946 -12.93560 -12.83126 -12.72009 -12.58213 -12.49794 -12.18097 -11.98939 -11.89401 -11.64400 -11.48851 -11.19797 -11.15129 -10.88511 -10.45996 -10.35700 -9.67486 -9.05876 -8.94629 -7.93684 -5.20407 -0.16685 0.28918 1.43937 1.48598 1.48965 1.57397 1.65064 2.01806 2.57095 2.66581 3.23581 3.39635 3.41960 3.57931 3.67779 3.72885 3.78372 3.81651 3.98125 4.07139 4.20614 4.25708 4.33421 4.37138 4.43335 4.47593 4.51436 4.61045 4.67488 4.71527 4.72379 4.72782 4.79555 4.81891 4.84025 4.87105 4.99205 5.08999 5.11762 5.14910 5.18758 5.24678 5.33094 5.35821 5.49290 5.54192 5.61542 5.69797 5.79367 6.29975 6.36340 7.02815 7.17659 7.37153 8.11912 8.38942 9.29455 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.002817 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.059122 B = 9935.643221 C =11585.615978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.190 3.810 3 C -0.307 4.307 4 C 0.385 3.615 5 O -0.580 6.580 6 C -0.350 4.350 7 C 0.576 3.424 8 O -0.583 6.583 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.121 4.121 12 C -0.075 4.075 13 H 0.083 0.917 14 C 0.156 3.844 15 N -0.738 5.738 16 C -0.246 4.246 17 H 0.066 0.934 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.967 3.033 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.090 4.090 25 H 0.049 0.951 26 C -0.142 4.142 27 C 0.122 3.878 28 C 0.211 3.789 29 N -0.456 5.456 30 C 0.030 3.970 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.001 0.999 40 H 0.027 0.973 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.211 0.789 49 H 0.107 0.893 50 H 0.120 0.880 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.454 -0.313 18.467 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 C -0.330 4.330 4 C 0.279 3.721 5 O -0.470 6.470 6 C -0.360 4.360 7 C 0.366 3.634 8 O -0.463 6.463 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.160 4.160 12 C -0.094 4.094 13 H 0.101 0.899 14 C 0.030 3.970 15 N -0.381 5.381 16 C -0.378 4.378 17 H 0.084 0.916 18 C -0.261 4.261 19 N -0.613 5.613 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.110 4.110 25 H 0.067 0.933 26 C -0.200 4.200 27 C 0.000 4.000 28 C 0.077 3.923 29 N -0.139 5.139 30 C -0.108 4.108 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.172 0.828 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.045 0.955 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.228 0.772 49 H 0.126 0.874 50 H 0.138 0.862 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.871 0.493 18.662 25.162 hybrid contribution 0.653 0.332 -1.242 1.442 sum -16.217 0.824 17.420 23.815 Atomic orbital electron populations 1.21413 0.83920 1.06821 1.06133 1.20851 0.97091 0.83926 0.89984 1.22109 0.93975 0.99483 1.17440 1.18920 0.90444 0.87598 0.75116 1.90741 1.71802 1.35748 1.48758 1.22112 0.93465 0.96327 1.24126 1.17978 0.87268 0.79273 0.78834 1.90734 1.68229 1.41914 1.45424 1.48122 1.08040 1.35157 1.42530 1.22385 0.96114 0.94957 0.88410 1.21906 0.95942 1.01256 0.96847 1.21197 0.94642 0.99357 0.94191 0.89897 1.20860 0.95855 0.90001 0.90302 1.42479 1.50471 1.35790 1.09390 1.19562 1.18385 1.10902 0.88997 0.91555 1.25421 1.00073 0.98560 1.02026 1.69767 1.33225 1.21183 1.37129 0.85240 0.76933 0.77634 0.80542 1.21411 1.21834 1.20195 1.21362 0.96516 0.98362 0.94794 0.93254 1.21790 0.93448 1.02521 1.02240 1.21682 0.78733 1.03075 0.96476 1.22752 0.82913 0.99677 0.86979 1.43222 1.04918 1.09055 1.56699 1.23147 0.98593 0.82122 1.06928 0.86947 0.88443 0.86922 0.82793 0.87220 0.88364 0.94092 0.90537 0.98142 0.95526 0.78868 0.93902 0.91130 0.92619 0.91767 0.90846 0.88641 0.77213 0.87417 0.86180 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 9.34 71.24 0.67 0.62 16 2 C 0.19 2.01 6.64 41.20 0.27 2.28 16 3 C -0.31 -6.69 9.57 22.34 0.21 -6.48 16 4 C 0.38 13.14 6.94 25.45 0.18 13.31 16 5 O -0.58 -27.11 17.06 4.64 0.08 -27.03 16 6 C -0.35 -9.77 5.34 -18.63 -0.10 -9.87 16 7 C 0.58 19.67 7.24 86.62 0.63 20.30 16 8 O -0.58 -26.02 15.85 6.12 0.10 -25.92 16 9 N -0.61 -16.45 2.97 -822.07 -2.44 -18.89 16 10 C 0.10 2.13 4.93 86.51 0.43 2.56 16 11 C -0.12 -3.53 5.26 30.82 0.16 -3.37 16 12 C -0.08 -2.31 1.73 -10.77 -0.02 -2.33 16 13 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.16 6.28 5.41 86.38 0.47 6.75 16 15 N -0.74 -36.38 5.32 -343.45 -1.83 -38.20 16 16 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 19 N -0.96 -56.17 13.06 21.65 0.28 -55.88 16 20 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.09 -2.57 2.41 -10.72 -0.03 -2.60 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 C -0.14 -3.58 8.82 71.98 0.63 -2.94 16 27 C 0.12 3.25 5.72 86.36 0.49 3.75 16 28 C 0.21 2.90 7.63 84.25 0.64 3.54 16 29 N -0.46 -3.41 2.97 -532.79 -1.58 -4.99 16 30 C 0.03 -0.11 9.98 127.77 1.28 1.17 16 31 H 0.11 -0.32 8.14 -2.39 -0.02 -0.33 16 32 H 0.10 0.09 7.98 -2.38 -0.02 0.07 16 33 H 0.11 -0.55 6.00 -2.39 -0.01 -0.56 16 34 H 0.15 3.07 8.01 -2.91 -0.02 3.05 16 35 H 0.11 1.53 8.13 -2.39 -0.02 1.51 16 36 H 0.10 1.69 4.61 -2.39 -0.01 1.68 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.43 7.15 -2.38 -0.02 2.41 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.03 1.08 6.14 -2.38 -0.01 1.06 16 41 H 0.38 19.03 6.84 -92.71 -0.63 18.40 16 42 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 43 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.05 1.53 6.30 -2.39 -0.02 1.52 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 2.25 6.99 -2.39 -0.02 2.24 16 47 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.21 1.28 6.32 -2.91 -0.02 1.27 16 49 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 50 H 0.12 -0.88 5.94 -2.39 -0.01 -0.89 16 51 H 0.12 -0.72 7.86 -2.39 -0.02 -0.73 16 Total: -1.00 -97.12 398.23 4.18 -92.95 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.32 Total: 19.99 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.22 Total: 10.51 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.56 Total: -117.97 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: 0.18 Total: -52.95 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -97.12 4.18 -92.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184616783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.414 kcal (2) G-P(sol) polarization free energy of solvation -97.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds