Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30006 * 127.33746 * 2 1 4 4 O 1.20652 * 112.30445 * 180.02562 * 3 2 1 5 5 C 1.33492 * 113.15579 * 359.71065 * 4 3 2 6 6 C 1.50705 * 126.83151 * 180.31300 * 5 4 3 7 7 C 1.53000 * 117.49931 * 8.79251 * 6 5 4 8 8 C 1.53004 * 117.49466 * 300.16972 * 6 5 4 9 9 C 1.37357 * 106.34273 * 0.45712 * 5 4 3 10 10 C 1.47394 * 128.56924 * 179.85174 * 9 5 4 11 11 O 1.21610 * 120.00204 * 269.70614 * 10 9 5 12 12 N 1.34784 * 120.00019 * 89.70110 * 10 9 5 13 13 C 1.46923 * 120.62964 * 359.97438 * 12 10 9 14 14 C 1.53190 * 108.77809 * 233.58685 * 13 12 10 15 15 C 1.53036 * 109.31273 * 305.36826 * 14 13 12 16 16 H 1.09010 * 109.46030 * 301.34357 * 15 14 13 17 17 C 1.52998 * 109.46186 * 181.38538 * 15 14 13 18 18 N 1.46503 * 109.46912 * 64.99776 * 17 15 14 19 19 C 1.36940 * 119.99598 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00016 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47057 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47023 * 119.99274 * 23 21 19 26 26 H 1.48497 * 109.46990 * 239.99488 * 23 21 19 27 27 C 1.53041 * 109.53807 * 61.36337 * 15 14 13 28 28 H 1.09009 * 109.49418 * 178.65148 * 27 15 14 29 29 C 1.52991 * 109.49746 * 58.58851 * 27 15 14 30 30 C 1.46927 * 120.62995 * 179.72134 * 12 10 9 31 31 H 1.08998 * 109.47208 * 269.95604 * 1 2 3 32 32 H 1.08997 * 109.47206 * 29.96061 * 1 2 3 33 33 H 1.09004 * 109.47241 * 149.96050 * 1 2 3 34 34 H 1.08999 * 115.54781 * 154.50405 * 6 5 4 35 35 H 1.09005 * 117.49720 * 0.02562 * 7 6 5 36 36 H 1.08996 * 117.50042 * 145.01878 * 7 6 5 37 37 H 1.08998 * 117.49826 * 214.97479 * 8 6 5 38 38 H 1.08998 * 117.50233 * 359.97438 * 8 6 5 39 39 H 1.09007 * 109.58781 * 353.37617 * 13 12 10 40 40 H 1.08998 * 109.58580 * 113.65434 * 13 12 10 41 41 H 1.09001 * 109.49704 * 65.32018 * 14 13 12 42 42 H 1.09001 * 109.49583 * 185.38352 * 14 13 12 43 43 H 1.08995 * 109.47235 * 184.99978 * 17 15 14 44 44 H 1.09004 * 109.46894 * 305.00036 * 17 15 14 45 45 H 0.96994 * 120.00038 * 0.02562 * 18 17 15 46 46 H 0.96999 * 120.00010 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.47404 * 60.00197 * 29 27 15 48 48 H 1.09005 * 109.47217 * 179.97438 * 29 27 15 49 49 H 1.08999 * 109.47284 * 300.00005 * 29 27 15 50 50 H 1.08998 * 109.58645 * 246.19910 * 30 12 10 51 51 H 1.09001 * 109.58579 * 6.63067 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4607 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0053 6 6 4.9712 -1.3247 0.0130 7 6 6.2342 -0.4869 0.2220 8 6 5.9227 -1.0702 -1.1578 9 6 2.3992 -1.1697 -0.0005 10 6 2.0400 -2.5992 -0.0008 11 8 1.8921 -3.1888 -1.0540 12 7 1.8757 -3.2530 1.1664 13 6 2.0517 -2.5545 2.4469 14 6 3.0596 -3.3325 3.2986 15 6 2.5944 -4.7842 3.4333 16 1 1.6053 -4.8077 3.8909 17 6 3.5807 -5.5561 4.3120 18 7 3.5522 -5.0121 5.6720 19 6 4.3583 -5.5478 6.6407 20 1 5.0147 -6.3716 6.4022 21 6 4.3310 -5.0327 7.9295 22 7 3.5307 -4.0291 8.2202 23 14 5.4301 -5.7639 9.2511 24 1 6.2283 -6.8745 8.6725 25 1 6.3441 -4.7153 9.7708 26 1 4.5912 -6.2837 10.3607 27 6 2.5308 -5.4319 2.0481 28 1 2.2224 -6.4728 2.1471 29 6 3.9108 -5.3684 1.3908 30 6 1.5118 -4.6764 1.1823 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3634 -0.8897 -0.5145 34 1 4.9555 -2.3274 0.4401 35 1 6.1091 0.5878 0.3543 36 1 7.0498 -0.9383 0.7868 37 1 6.5335 -1.9054 -1.5006 38 1 5.5926 -0.3797 -1.9338 39 1 2.4272 -1.5474 2.2652 40 1 1.0957 -2.4995 2.9675 41 1 4.0379 -3.3070 2.8185 42 1 3.1276 -2.8785 4.2872 43 1 3.2992 -6.6089 4.3359 44 1 4.5861 -5.4580 3.9024 45 1 2.9624 -4.2725 5.8862 46 1 3.5119 -3.6689 9.1206 47 1 4.6325 -5.9028 2.0087 48 1 3.8651 -5.8302 0.4045 49 1 4.2183 -4.3274 1.2911 50 1 0.5130 -4.7935 1.6029 51 1 1.5311 -5.0699 0.1659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184822053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = 56.209960 kcal Electronic energy + Delta-G solvation = -32094.799341 eV Core-core repulsion = 27998.390008 eV Total energy + Delta-G solvation = -4096.409333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.09047 -40.42273 -38.13278 -37.68176 -35.03953 -34.77975 -33.40963 -32.05729 -31.60393 -30.36709 -29.05289 -27.20480 -27.01890 -24.73341 -23.86292 -23.44864 -23.04036 -22.73760 -21.48417 -20.41997 -19.66150 -18.48406 -18.07721 -17.69070 -17.11706 -16.76909 -16.26596 -15.91920 -15.29111 -14.97125 -14.66969 -14.35649 -14.08735 -13.86034 -13.74168 -13.64029 -13.54195 -13.47393 -13.20644 -12.94049 -12.57966 -12.50270 -12.37930 -12.21855 -11.92301 -11.70044 -11.64288 -11.50857 -11.36890 -11.09405 -10.97110 -10.82712 -10.78023 -10.40944 -10.34722 -10.27508 -10.17980 -10.00943 -9.93656 -9.67300 -9.34117 -8.89211 -8.69093 -6.93486 -5.79578 -3.07563 1.03924 1.69559 2.25670 2.51179 2.97368 3.40996 3.43662 3.47053 3.48972 3.81997 3.90835 4.34492 4.35856 4.52211 4.55905 4.57466 4.76405 4.90801 4.92799 4.99570 5.09312 5.14733 5.19778 5.20061 5.28013 5.30364 5.35619 5.42434 5.50502 5.54408 5.57948 5.60541 5.68924 5.73603 5.74670 5.76497 5.80698 5.83275 6.00816 6.04541 6.14653 6.24083 6.31987 6.40965 6.42365 6.61448 6.77367 6.89578 7.22699 7.68257 7.95780 8.00636 8.39763 9.51120 10.09240 10.43601 11.43417 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.002935 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.356069 B = 9539.290468 C = 9956.877599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.354 5.354 4 O 0.097 5.903 5 C 0.051 3.949 6 C -0.095 4.095 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.238 4.238 10 C 0.602 3.398 11 O -0.532 6.532 12 N -0.592 5.592 13 C 0.107 3.893 14 C -0.125 4.125 15 C -0.089 4.089 16 H 0.072 0.928 17 C 0.159 3.841 18 N -0.732 5.732 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.098 4.098 28 H 0.084 0.916 29 C -0.145 4.145 30 C 0.117 3.883 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 6.427 -19.533 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.060 5.060 4 O 0.035 5.965 5 C -0.012 4.012 6 C -0.114 4.114 7 C -0.196 4.196 8 C -0.193 4.193 9 C -0.245 4.245 10 C 0.388 3.612 11 O -0.409 6.409 12 N -0.324 5.324 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.108 4.108 16 H 0.090 0.910 17 C 0.031 3.969 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.118 4.118 28 H 0.102 0.898 29 C -0.202 4.202 30 C -0.005 4.005 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.096 7.313 -20.005 21.402 hybrid contribution 0.226 -0.874 1.087 1.412 sum -1.870 6.440 -18.918 20.071 Atomic orbital electron populations 1.20227 0.85124 1.04209 1.03924 1.24716 0.98555 0.86442 1.01113 1.73620 0.89018 1.23210 1.20196 1.84501 1.21522 1.22354 1.68099 1.23514 0.95522 0.83410 0.98736 1.20529 0.84061 0.99596 1.07230 1.23120 0.96835 1.00306 0.99336 1.23115 1.00549 1.03892 0.91735 1.21735 0.92495 0.95361 1.14950 1.16875 0.76822 0.83879 0.83667 1.90798 1.51233 1.67874 1.30999 1.48040 1.67693 1.11048 1.05659 1.21861 1.00430 0.95897 0.83340 1.21956 0.98112 0.95640 1.00611 1.21316 1.00562 0.94647 0.94249 0.90951 1.20704 0.95464 0.94907 0.85776 1.42387 1.49778 1.40841 1.04631 1.19266 1.15656 1.12448 0.89515 0.91246 1.24715 1.00026 0.98715 0.97493 1.69657 1.41218 1.27511 1.19863 0.86147 0.79893 0.78198 0.82144 1.20589 1.21885 1.21896 1.21543 0.95691 0.99612 0.94917 0.89824 1.21865 0.96657 1.01779 0.99885 1.21844 0.97746 0.79095 1.01843 0.89481 0.89904 0.89810 0.84362 0.87563 0.87089 0.87220 0.88087 0.90501 0.90914 0.91400 0.89316 0.96482 0.96108 0.78324 0.93597 0.91790 0.93204 0.92876 0.91127 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.32 16 2 C 0.05 0.65 7.59 -79.77 -0.61 0.04 16 3 N -0.35 -4.56 12.01 34.78 0.42 -4.14 16 4 O 0.10 1.18 10.86 18.66 0.20 1.38 16 5 C 0.05 0.60 6.89 -34.63 -0.24 0.36 16 6 C -0.10 -0.91 6.15 -91.77 -0.56 -1.47 16 7 C -0.16 -1.21 10.18 -26.73 -0.27 -1.49 16 8 C -0.16 -1.19 10.23 -26.73 -0.27 -1.47 16 9 C -0.24 -3.00 4.23 -102.89 -0.44 -3.43 16 10 C 0.60 8.09 7.52 -12.53 -0.09 7.99 16 11 O -0.53 -8.66 16.52 5.27 0.09 -8.57 16 12 N -0.59 -7.10 2.40 -173.80 -0.42 -7.52 16 13 C 0.11 1.27 6.33 -3.71 -0.02 1.25 16 14 C -0.13 -1.73 4.90 -26.61 -0.13 -1.86 16 15 C -0.09 -1.29 1.96 -90.58 -0.18 -1.46 16 16 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 17 C 0.16 2.98 5.18 -4.04 -0.02 2.96 16 18 N -0.73 -17.61 5.32 -59.91 -0.32 -17.93 16 19 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 23 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C -0.10 -1.17 2.72 -90.30 -0.25 -1.42 16 28 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 29 C -0.14 -1.72 8.39 37.15 0.31 -1.41 16 30 C 0.12 1.33 5.87 -3.51 -0.02 1.31 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.14 1.35 7.75 -51.93 -0.40 0.95 16 35 H 0.11 0.79 8.02 -51.93 -0.42 0.38 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.91 6.25 -51.93 -0.32 0.58 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 42 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 45 H 0.38 9.62 6.85 -40.82 -0.28 9.34 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.64 5.58 -51.93 -0.29 0.35 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -32.16 407.27 -8.94 -41.09 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.09 Total: 6.87 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.66 Total: -7.53 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.41 Total: -56.39 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.29 Total: -7.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.16 -8.94 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.301 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds