Wall clock time and date at job start Wed Apr 1 2020 04:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30006 * 127.33746 * 2 1 4 4 O 1.20652 * 112.30445 * 180.02562 * 3 2 1 5 5 C 1.33492 * 113.15579 * 359.71065 * 4 3 2 6 6 C 1.50705 * 126.83151 * 180.31300 * 5 4 3 7 7 C 1.53000 * 117.49931 * 8.79251 * 6 5 4 8 8 C 1.53004 * 117.49466 * 300.16972 * 6 5 4 9 9 C 1.37357 * 106.34273 * 0.45712 * 5 4 3 10 10 C 1.47394 * 128.56924 * 179.85174 * 9 5 4 11 11 O 1.21610 * 120.00204 * 269.70614 * 10 9 5 12 12 N 1.34784 * 120.00019 * 89.70110 * 10 9 5 13 13 C 1.46923 * 120.62964 * 359.97438 * 12 10 9 14 14 C 1.53190 * 108.77809 * 233.58685 * 13 12 10 15 15 C 1.53036 * 109.31273 * 305.36826 * 14 13 12 16 16 H 1.09010 * 109.46030 * 301.34357 * 15 14 13 17 17 C 1.52998 * 109.46186 * 181.38538 * 15 14 13 18 18 N 1.46503 * 109.46912 * 64.99776 * 17 15 14 19 19 C 1.36940 * 119.99598 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00016 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47057 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47023 * 119.99274 * 23 21 19 26 26 H 1.48497 * 109.46990 * 239.99488 * 23 21 19 27 27 C 1.53041 * 109.53807 * 61.36337 * 15 14 13 28 28 H 1.09009 * 109.49418 * 178.65148 * 27 15 14 29 29 C 1.52991 * 109.49746 * 58.58851 * 27 15 14 30 30 C 1.46927 * 120.62995 * 179.72134 * 12 10 9 31 31 H 1.08998 * 109.47208 * 269.95604 * 1 2 3 32 32 H 1.08997 * 109.47206 * 29.96061 * 1 2 3 33 33 H 1.09004 * 109.47241 * 149.96050 * 1 2 3 34 34 H 1.08999 * 115.54781 * 154.50405 * 6 5 4 35 35 H 1.09005 * 117.49720 * 0.02562 * 7 6 5 36 36 H 1.08996 * 117.50042 * 145.01878 * 7 6 5 37 37 H 1.08998 * 117.49826 * 214.97479 * 8 6 5 38 38 H 1.08998 * 117.50233 * 359.97438 * 8 6 5 39 39 H 1.09007 * 109.58781 * 353.37617 * 13 12 10 40 40 H 1.08998 * 109.58580 * 113.65434 * 13 12 10 41 41 H 1.09001 * 109.49704 * 65.32018 * 14 13 12 42 42 H 1.09001 * 109.49583 * 185.38352 * 14 13 12 43 43 H 1.08995 * 109.47235 * 184.99978 * 17 15 14 44 44 H 1.09004 * 109.46894 * 305.00036 * 17 15 14 45 45 H 0.96994 * 120.00038 * 0.02562 * 18 17 15 46 46 H 0.96999 * 120.00010 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.47404 * 60.00197 * 29 27 15 48 48 H 1.09005 * 109.47217 * 179.97438 * 29 27 15 49 49 H 1.08999 * 109.47284 * 300.00005 * 29 27 15 50 50 H 1.08998 * 109.58645 * 246.19910 * 30 12 10 51 51 H 1.09001 * 109.58579 * 6.63067 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4607 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0053 6 6 4.9712 -1.3247 0.0130 7 6 6.2342 -0.4869 0.2220 8 6 5.9227 -1.0702 -1.1578 9 6 2.3992 -1.1697 -0.0005 10 6 2.0400 -2.5992 -0.0008 11 8 1.8921 -3.1888 -1.0540 12 7 1.8757 -3.2530 1.1664 13 6 2.0517 -2.5545 2.4469 14 6 3.0596 -3.3325 3.2986 15 6 2.5944 -4.7842 3.4333 16 1 1.6053 -4.8077 3.8909 17 6 3.5807 -5.5561 4.3120 18 7 3.5522 -5.0121 5.6720 19 6 4.3583 -5.5478 6.6407 20 1 5.0147 -6.3716 6.4022 21 6 4.3310 -5.0327 7.9295 22 7 3.5307 -4.0291 8.2202 23 14 5.4301 -5.7639 9.2511 24 1 6.2283 -6.8745 8.6725 25 1 6.3441 -4.7153 9.7708 26 1 4.5912 -6.2837 10.3607 27 6 2.5308 -5.4319 2.0481 28 1 2.2224 -6.4728 2.1471 29 6 3.9108 -5.3684 1.3908 30 6 1.5118 -4.6764 1.1823 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3634 -0.8897 -0.5145 34 1 4.9555 -2.3274 0.4401 35 1 6.1091 0.5878 0.3543 36 1 7.0498 -0.9383 0.7868 37 1 6.5335 -1.9054 -1.5006 38 1 5.5926 -0.3797 -1.9338 39 1 2.4272 -1.5474 2.2652 40 1 1.0957 -2.4995 2.9675 41 1 4.0379 -3.3070 2.8185 42 1 3.1276 -2.8785 4.2872 43 1 3.2992 -6.6089 4.3359 44 1 4.5861 -5.4580 3.9024 45 1 2.9624 -4.2725 5.8862 46 1 3.5119 -3.6689 9.1206 47 1 4.6325 -5.9028 2.0087 48 1 3.8651 -5.8302 0.4045 49 1 4.2183 -4.3274 1.2911 50 1 0.5130 -4.7935 1.6029 51 1 1.5311 -5.0699 0.1659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184822053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:13 Heat of formation + Delta-G solvation = 39.110141 kcal Electronic energy + Delta-G solvation = -32095.540845 eV Core-core repulsion = 27998.390008 eV Total energy + Delta-G solvation = -4097.150837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.00427 -41.48708 -39.28973 -38.38038 -36.56357 -35.74605 -34.78523 -33.32294 -32.63409 -31.98345 -29.84172 -28.51631 -28.16486 -25.96901 -25.08738 -24.58850 -24.17317 -23.35390 -22.84856 -21.44517 -20.55637 -19.66994 -19.20414 -18.80631 -18.57927 -17.73801 -17.21025 -16.86076 -16.76275 -16.15936 -15.84478 -15.49808 -15.37389 -15.32695 -14.90965 -14.72945 -14.38361 -14.33395 -14.30514 -13.97800 -13.94921 -13.69798 -13.55026 -13.09701 -12.96265 -12.84338 -12.68900 -12.56191 -12.51292 -12.45966 -12.17370 -12.14260 -12.03220 -11.89520 -11.56593 -11.50327 -11.46415 -11.24957 -11.17719 -10.95142 -10.87043 -10.21489 -9.73787 -8.93943 -7.92829 -5.19886 0.14620 0.78695 1.22557 1.48622 1.49196 1.58737 1.60433 2.01561 2.57861 2.75723 2.98096 3.09243 3.41192 3.42576 3.59406 3.70307 3.74785 3.80539 3.84281 3.92863 4.02287 4.14192 4.21325 4.31805 4.34755 4.37439 4.45735 4.48169 4.54866 4.65453 4.67094 4.71766 4.72713 4.76070 4.81788 4.85864 4.88340 4.99059 5.00194 5.04374 5.08970 5.16603 5.18799 5.19755 5.27348 5.31591 5.48810 5.54343 5.61440 6.19897 6.30411 6.92534 7.09881 7.37314 8.14646 8.37590 9.30718 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.002935 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.356069 B = 9539.290468 C = 9956.877599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.373 5.373 4 O 0.090 5.910 5 C 0.059 3.941 6 C -0.117 4.117 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.262 4.262 10 C 0.609 3.391 11 O -0.563 6.563 12 N -0.585 5.585 13 C 0.117 3.883 14 C -0.117 4.117 15 C -0.078 4.078 16 H 0.069 0.931 17 C 0.159 3.841 18 N -0.742 5.742 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.295 1.295 27 C -0.090 4.090 28 H 0.096 0.904 29 C -0.141 4.141 30 C 0.118 3.882 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.022 0.978 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.087 0.913 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 5.918 -20.356 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.082 5.082 4 O 0.031 5.969 5 C -0.004 4.004 6 C -0.136 4.136 7 C -0.186 4.186 8 C -0.183 4.183 9 C -0.269 4.269 10 C 0.396 3.604 11 O -0.442 6.442 12 N -0.316 5.316 13 C -0.005 4.005 14 C -0.155 4.155 15 C -0.097 4.097 16 H 0.087 0.913 17 C 0.033 3.967 18 N -0.385 5.385 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.221 1.221 26 H -0.222 1.222 27 C -0.109 4.109 28 H 0.114 0.886 29 C -0.199 4.199 30 C -0.003 4.003 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.105 0.895 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.796 6.779 -20.850 21.998 hybrid contribution 0.171 -0.745 1.292 1.502 sum -1.624 6.034 -19.558 20.532 Atomic orbital electron populations 1.20363 0.83246 1.04875 1.05008 1.25192 0.99778 0.85950 0.99944 1.73607 0.89314 1.23778 1.21482 1.84477 1.21468 1.22610 1.68344 1.23884 0.96170 0.83198 0.97139 1.20644 0.83942 0.99652 1.09398 1.23205 0.95781 1.00191 0.99395 1.23221 0.99349 1.04227 0.91459 1.21760 0.93190 0.95169 1.16771 1.16895 0.76135 0.84040 0.83374 1.90778 1.52796 1.68621 1.31999 1.48023 1.66990 1.11305 1.05309 1.21749 1.00317 0.95533 0.82899 1.21813 0.98807 0.95343 0.99554 1.21188 0.99000 0.94595 0.94888 0.91276 1.20842 0.96688 0.95125 0.84035 1.42577 1.49103 1.40647 1.06203 1.19633 1.15361 1.11987 0.90310 0.90976 1.25461 1.01819 0.99561 0.99626 1.69798 1.43027 1.29037 1.19953 0.85164 0.78165 0.77617 0.79382 1.19214 1.22128 1.22209 1.21485 0.96121 1.00124 0.93181 0.88604 1.21827 0.96287 1.01508 1.00241 1.21901 0.98257 0.78451 1.01718 0.88082 0.88717 0.89628 0.84713 0.87469 0.85858 0.85682 0.88084 0.90307 0.89791 0.91476 0.91917 0.96582 0.96044 0.79252 0.94106 0.92521 0.92208 0.93292 0.89507 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.49 71.24 0.75 -0.54 16 2 C 0.05 1.25 7.59 45.16 0.34 1.59 16 3 N -0.37 -9.44 12.01 -44.79 -0.54 -9.98 16 4 O 0.09 2.17 10.86 77.00 0.84 3.00 16 5 C 0.06 1.35 6.89 25.48 0.18 1.53 16 6 C -0.12 -2.14 6.15 -11.54 -0.07 -2.21 16 7 C -0.15 -2.07 10.18 30.60 0.31 -1.75 16 8 C -0.15 -2.02 10.23 30.60 0.31 -1.70 16 9 C -0.26 -6.42 4.23 -18.74 -0.08 -6.50 16 10 C 0.61 15.77 7.52 86.65 0.65 16.42 16 11 O -0.56 -17.84 16.52 -4.06 -0.07 -17.90 16 12 N -0.59 -13.22 2.40 -822.04 -1.97 -15.19 16 13 C 0.12 2.65 6.33 86.36 0.55 3.20 16 14 C -0.12 -3.18 4.90 30.67 0.15 -3.03 16 15 C -0.08 -2.17 1.96 -10.77 -0.02 -2.19 16 16 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 17 C 0.16 5.86 5.18 86.38 0.45 6.31 16 18 N -0.74 -35.79 5.32 -343.45 -1.83 -37.61 16 19 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.97 -57.64 13.06 21.65 0.28 -57.36 16 23 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 C -0.09 -1.98 2.72 -10.59 -0.03 -2.01 16 28 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 29 C -0.14 -3.15 8.39 71.98 0.60 -2.54 16 30 C 0.12 2.47 5.87 86.49 0.51 2.97 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 2.54 7.75 -2.39 -0.02 2.53 16 35 H 0.11 1.48 8.02 -2.38 -0.02 1.46 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.80 6.25 -2.38 -0.01 1.78 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.82 6.34 -2.39 -0.02 1.81 16 42 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.02 0.80 6.74 -2.39 -0.02 0.79 16 45 H 0.37 19.10 6.85 -92.71 -0.64 18.47 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.06 1.34 6.58 -2.39 -0.02 1.32 16 48 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.05 1.12 5.58 -2.39 -0.01 1.11 16 50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.09 2.02 7.00 -2.39 -0.02 2.00 16 Total: -1.00 -68.30 407.27 4.96 -63.35 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.31 Total: 30.68 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.90 Total: -6.28 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -4.05 Total: -120.14 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.77 Total: -14.90 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.30 4.96 -63.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.455 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds