Wall clock time and date at job start Wed Apr 1 2020 04:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30015 * 127.33441 * 2 1 4 4 O 1.20664 * 112.30016 * 180.27515 * 3 2 1 5 5 C 1.33494 * 113.15557 * 359.72851 * 4 3 2 6 6 C 1.50705 * 126.82718 * 179.97438 * 5 4 3 7 7 C 1.53005 * 117.49658 * 8.63007 * 6 5 4 8 8 C 1.52999 * 117.49665 * 300.00720 * 6 5 4 9 9 C 1.37358 * 106.34148 * 0.02562 * 5 4 3 10 10 C 1.47405 * 128.56136 * 179.97438 * 9 5 4 11 11 O 1.21602 * 120.00011 * 89.99569 * 10 9 5 12 12 N 1.34783 * 119.99713 * 269.99654 * 10 9 5 13 13 C 1.46924 * 120.63019 * 359.97438 * 12 10 9 14 14 C 1.53199 * 108.76350 * 126.40649 * 13 12 10 15 15 C 1.53037 * 109.31109 * 54.65208 * 14 13 12 16 16 H 1.09002 * 109.46037 * 58.63275 * 15 14 13 17 17 C 1.53001 * 109.45929 * 178.59964 * 15 14 13 18 18 N 1.46490 * 109.47264 * 295.02805 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53038 * 109.53037 * 298.61730 * 15 14 13 28 28 H 1.08998 * 109.49686 * 301.38685 * 27 15 14 29 29 C 1.53004 * 109.49957 * 181.32396 * 27 15 14 30 30 C 1.46923 * 120.62628 * 179.97438 * 12 10 9 31 31 H 1.08992 * 109.46919 * 270.14646 * 1 2 3 32 32 H 1.08992 * 109.47236 * 30.15380 * 1 2 3 33 33 H 1.09001 * 109.46828 * 150.15157 * 1 2 3 34 34 H 1.08995 * 115.54467 * 154.33392 * 6 5 4 35 35 H 1.09000 * 117.49696 * 359.97438 * 7 6 5 36 36 H 1.09001 * 117.49681 * 145.02296 * 7 6 5 37 37 H 1.09001 * 117.49620 * 214.97555 * 8 6 5 38 38 H 1.08996 * 117.50086 * 359.97239 * 8 6 5 39 39 H 1.08994 * 109.58757 * 246.19670 * 13 12 10 40 40 H 1.09004 * 109.59175 * 6.48752 * 13 12 10 41 41 H 1.09005 * 109.50670 * 294.69833 * 14 13 12 42 42 H 1.08994 * 109.48659 * 174.59704 * 14 13 12 43 43 H 1.09003 * 109.46836 * 175.02512 * 17 15 14 44 44 H 1.08999 * 109.47071 * 55.03552 * 17 15 14 45 45 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 47 47 H 1.08999 * 109.46815 * 59.99950 * 29 27 15 48 48 H 1.09001 * 109.47064 * 179.97438 * 29 27 15 49 49 H 1.08999 * 109.47057 * 299.99441 * 29 27 15 50 50 H 1.09001 * 109.58243 * 113.79815 * 30 12 10 51 51 H 1.08997 * 109.58764 * 353.37747 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3246 -0.0101 7 6 6.2364 -0.4866 0.1851 8 6 5.9103 -1.0706 -1.1910 9 6 2.3992 -1.1696 0.0026 10 6 2.0401 -2.5992 0.0060 11 8 1.8971 -3.1877 1.0605 12 7 1.8703 -3.2542 -1.1597 13 6 2.0391 -2.5566 -2.4418 14 6 3.0435 -3.3348 -3.2977 15 6 2.5786 -4.7869 -3.4289 16 1 1.5872 -4.8113 -3.8813 17 6 3.5610 -5.5588 -4.3121 18 7 3.5258 -5.0155 -5.6720 19 6 4.3274 -5.5513 -6.6443 20 1 4.9853 -6.3747 -6.4087 21 6 4.2945 -5.0362 -7.9330 22 7 3.4931 -4.0323 -8.2201 23 14 5.3876 -5.7677 -9.2595 24 1 5.1663 -5.0446 -10.5376 25 1 6.8108 -5.6355 -8.8565 26 1 5.0551 -7.2038 -9.4387 27 6 2.5225 -5.4334 -2.0429 28 1 3.5082 -5.3874 -1.5799 29 6 2.0894 -6.8946 -2.1780 30 6 1.5129 -4.6792 -1.1724 31 1 -0.3633 0.0026 1.0276 32 1 -0.3633 0.8885 -0.5162 33 1 -0.3633 -0.8914 -0.5115 34 1 4.9601 -2.3271 0.4176 35 1 6.1127 0.5882 0.3175 36 1 7.0580 -0.9378 0.7415 37 1 6.5175 -1.9060 -1.5399 38 1 5.5720 -0.3804 -1.9637 39 1 1.0809 -2.5052 -2.9587 40 1 2.4124 -1.5482 -2.2628 41 1 4.0242 -3.3083 -2.8225 42 1 3.1057 -2.8819 -4.2871 43 1 3.2797 -6.6117 -4.3340 44 1 4.5682 -5.4602 -3.9073 45 1 2.9352 -4.2757 -5.8837 46 1 2.9252 -3.6528 -7.5313 47 1 2.8069 -7.4301 -2.7997 48 1 2.0501 -7.3547 -1.1906 49 1 1.1032 -6.9400 -2.6399 50 1 0.5117 -4.8011 -1.5856 51 1 1.5414 -5.0722 -0.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184822055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:20 Heat of formation + Delta-G solvation = 54.025032 kcal Electronic energy + Delta-G solvation = -31968.447490 eV Core-core repulsion = 27871.943411 eV Total energy + Delta-G solvation = -4096.504079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.12315 -40.37061 -38.16529 -37.69407 -35.23500 -34.85211 -33.76252 -32.20226 -31.85977 -30.24024 -29.08919 -27.21028 -26.81863 -24.63858 -23.87557 -23.37996 -22.73003 -22.61675 -21.57363 -20.41785 -19.88293 -19.21021 -18.04771 -17.74353 -17.30667 -16.80095 -16.37645 -16.01442 -15.29185 -14.94367 -14.68939 -14.51986 -14.06117 -13.93719 -13.68157 -13.65508 -13.59634 -13.43387 -13.23576 -13.04693 -12.95967 -12.53435 -12.35602 -12.08580 -11.96650 -11.90955 -11.74690 -11.67698 -11.44778 -11.01453 -10.80564 -10.77434 -10.73666 -10.52087 -10.44113 -10.27376 -10.21417 -10.03388 -9.97049 -9.37399 -9.19657 -8.89665 -8.75770 -7.01230 -6.12553 -3.11877 1.00361 1.65580 2.19567 2.47811 2.89190 3.43616 3.49860 3.53029 3.70624 3.77646 3.88666 4.30548 4.33653 4.50793 4.56227 4.62589 4.70255 4.82210 4.86195 4.93809 5.00405 5.11876 5.16351 5.18736 5.24800 5.30517 5.34130 5.35634 5.40666 5.53649 5.57629 5.58587 5.65548 5.67902 5.72174 5.74750 5.76053 5.78468 5.83807 5.89734 6.10907 6.15197 6.19617 6.32415 6.36875 6.46128 6.71583 6.80427 7.15670 7.78813 7.89081 7.97019 8.73557 9.21173 10.07464 10.22571 11.35921 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.003050 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.311711 B = 9179.375977 C =10072.518794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.353 5.353 4 O 0.097 5.903 5 C 0.053 3.947 6 C -0.097 4.097 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.240 4.240 10 C 0.602 3.398 11 O -0.533 6.533 12 N -0.594 5.594 13 C 0.108 3.892 14 C -0.123 4.123 15 C -0.090 4.090 16 H 0.071 0.929 17 C 0.163 3.837 18 N -0.743 5.743 19 C -0.330 4.330 20 H 0.063 0.937 21 C -0.045 4.045 22 N -0.944 5.944 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.096 4.096 28 H 0.074 0.926 29 C -0.147 4.147 30 C 0.117 3.883 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.017 0.983 45 H 0.366 0.634 46 H 0.254 0.746 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 5.708 18.758 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 N -0.060 5.060 4 O 0.035 5.965 5 C -0.010 4.010 6 C -0.116 4.116 7 C -0.198 4.198 8 C -0.189 4.189 9 C -0.247 4.247 10 C 0.388 3.612 11 O -0.410 6.410 12 N -0.326 5.326 13 C -0.014 4.014 14 C -0.161 4.161 15 C -0.109 4.109 16 H 0.089 0.911 17 C 0.036 3.964 18 N -0.388 5.388 19 C -0.461 4.461 20 H 0.081 0.919 21 C -0.242 4.242 22 N -0.590 5.590 23 Si 0.909 3.091 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.116 4.116 28 H 0.092 0.908 29 C -0.205 4.205 30 C -0.004 4.004 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.043 0.957 44 H 0.035 0.965 45 H 0.199 0.801 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.715 6.627 17.752 19.026 hybrid contribution -0.719 -0.686 1.517 1.814 sum -2.434 5.941 19.269 20.311 Atomic orbital electron populations 1.20216 0.85103 1.04179 1.03906 1.24719 0.98558 0.86423 1.01099 1.73632 0.89011 1.23176 1.20193 1.84508 1.21523 1.22343 1.68077 1.23532 0.95526 0.83405 0.98560 1.20529 0.84080 0.99482 1.07553 1.23096 0.96554 1.00175 0.99956 1.23170 1.00284 1.04033 0.91443 1.21712 0.92554 0.95287 1.15193 1.16895 0.76703 0.83951 0.83630 1.90799 1.51279 1.68029 1.30853 1.48061 1.67887 1.10974 1.05706 1.21844 1.00310 0.95973 0.83292 1.21906 0.98220 0.95624 1.00337 1.21369 1.00539 0.94455 0.94566 0.91063 1.20674 0.95222 0.95297 0.85224 1.42376 1.50231 1.40811 1.05430 1.20021 1.18770 1.15447 0.91888 0.91898 1.25740 1.02296 0.98639 0.97552 1.70900 1.26789 1.25715 1.35591 0.83260 0.74789 0.74911 0.76106 1.21031 1.22300 1.22297 1.21442 0.99243 0.95219 0.95657 0.90799 1.21833 1.02098 0.94963 1.01584 1.21774 0.98063 0.78784 1.01811 0.89598 0.89759 0.89903 0.84438 0.87635 0.87340 0.86928 0.87756 0.91012 0.90392 0.91498 0.89696 0.95710 0.96523 0.80091 0.93529 0.91257 0.92840 0.92467 0.91146 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.49 36.00 0.38 -0.31 16 2 C 0.05 0.65 7.59 -79.77 -0.61 0.04 16 3 N -0.35 -4.54 12.01 34.78 0.42 -4.12 16 4 O 0.10 1.18 10.86 18.65 0.20 1.38 16 5 C 0.05 0.62 6.90 -34.63 -0.24 0.38 16 6 C -0.10 -0.93 6.15 -91.77 -0.56 -1.49 16 7 C -0.16 -1.20 10.18 -26.73 -0.27 -1.47 16 8 C -0.15 -1.29 10.23 -26.73 -0.27 -1.56 16 9 C -0.24 -3.03 4.22 -102.89 -0.43 -3.46 16 10 C 0.60 8.19 7.52 -12.53 -0.09 8.09 16 11 O -0.53 -8.74 16.52 5.28 0.09 -8.66 16 12 N -0.59 -7.25 2.97 -174.07 -0.52 -7.76 16 13 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 14 C -0.12 -1.69 5.25 -26.61 -0.14 -1.83 16 15 C -0.09 -1.32 1.73 -90.58 -0.16 -1.47 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.16 3.10 5.41 -4.05 -0.02 3.08 16 18 N -0.74 -17.89 5.32 -59.91 -0.32 -18.21 16 19 C -0.33 -9.13 9.99 -15.06 -0.15 -9.28 16 20 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 22 N -0.94 -28.56 13.70 55.49 0.76 -27.80 16 23 Si 1.08 25.52 29.92 -169.99 -5.09 20.43 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.10 -1.17 2.41 -90.52 -0.22 -1.39 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 C -0.15 -1.67 8.82 37.16 0.33 -1.35 16 30 C 0.12 1.37 5.71 -3.73 -0.02 1.35 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.14 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.11 0.77 8.02 -51.93 -0.42 0.35 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.91 6.26 -51.93 -0.32 0.59 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 43 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.37 8.93 5.68 -40.82 -0.23 8.70 16 46 H 0.25 7.51 6.77 -40.82 -0.28 7.23 16 47 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -33.20 410.33 -9.05 -42.26 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.18 Total: 7.10 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.61 Total: -10.80 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.34 Total: -57.90 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.29 Total: -7.28 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.43 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.20 -9.05 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.281 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds