Wall clock time and date at job start Wed Apr 1 2020 04:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30015 * 127.33441 * 2 1 4 4 O 1.20664 * 112.30016 * 180.27515 * 3 2 1 5 5 C 1.33494 * 113.15557 * 359.72851 * 4 3 2 6 6 C 1.50705 * 126.82718 * 179.97438 * 5 4 3 7 7 C 1.53005 * 117.49658 * 8.63007 * 6 5 4 8 8 C 1.52999 * 117.49665 * 300.00720 * 6 5 4 9 9 C 1.37358 * 106.34148 * 0.02562 * 5 4 3 10 10 C 1.47405 * 128.56136 * 179.97438 * 9 5 4 11 11 O 1.21602 * 120.00011 * 89.99569 * 10 9 5 12 12 N 1.34783 * 119.99713 * 269.99654 * 10 9 5 13 13 C 1.46924 * 120.63019 * 359.97438 * 12 10 9 14 14 C 1.53199 * 108.76350 * 126.40649 * 13 12 10 15 15 C 1.53037 * 109.31109 * 54.65208 * 14 13 12 16 16 H 1.09002 * 109.46037 * 58.63275 * 15 14 13 17 17 C 1.53001 * 109.45929 * 178.59964 * 15 14 13 18 18 N 1.46490 * 109.47264 * 295.02805 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53038 * 109.53037 * 298.61730 * 15 14 13 28 28 H 1.08998 * 109.49686 * 301.38685 * 27 15 14 29 29 C 1.53004 * 109.49957 * 181.32396 * 27 15 14 30 30 C 1.46923 * 120.62628 * 179.97438 * 12 10 9 31 31 H 1.08992 * 109.46919 * 270.14646 * 1 2 3 32 32 H 1.08992 * 109.47236 * 30.15380 * 1 2 3 33 33 H 1.09001 * 109.46828 * 150.15157 * 1 2 3 34 34 H 1.08995 * 115.54467 * 154.33392 * 6 5 4 35 35 H 1.09000 * 117.49696 * 359.97438 * 7 6 5 36 36 H 1.09001 * 117.49681 * 145.02296 * 7 6 5 37 37 H 1.09001 * 117.49620 * 214.97555 * 8 6 5 38 38 H 1.08996 * 117.50086 * 359.97239 * 8 6 5 39 39 H 1.08994 * 109.58757 * 246.19670 * 13 12 10 40 40 H 1.09004 * 109.59175 * 6.48752 * 13 12 10 41 41 H 1.09005 * 109.50670 * 294.69833 * 14 13 12 42 42 H 1.08994 * 109.48659 * 174.59704 * 14 13 12 43 43 H 1.09003 * 109.46836 * 175.02512 * 17 15 14 44 44 H 1.08999 * 109.47071 * 55.03552 * 17 15 14 45 45 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 47 47 H 1.08999 * 109.46815 * 59.99950 * 29 27 15 48 48 H 1.09001 * 109.47064 * 179.97438 * 29 27 15 49 49 H 1.08999 * 109.47057 * 299.99441 * 29 27 15 50 50 H 1.09001 * 109.58243 * 113.79815 * 30 12 10 51 51 H 1.08997 * 109.58764 * 353.37747 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3246 -0.0101 7 6 6.2364 -0.4866 0.1851 8 6 5.9103 -1.0706 -1.1910 9 6 2.3992 -1.1696 0.0026 10 6 2.0401 -2.5992 0.0060 11 8 1.8971 -3.1877 1.0605 12 7 1.8703 -3.2542 -1.1597 13 6 2.0391 -2.5566 -2.4418 14 6 3.0435 -3.3348 -3.2977 15 6 2.5786 -4.7869 -3.4289 16 1 1.5872 -4.8113 -3.8813 17 6 3.5610 -5.5588 -4.3121 18 7 3.5258 -5.0155 -5.6720 19 6 4.3274 -5.5513 -6.6443 20 1 4.9853 -6.3747 -6.4087 21 6 4.2945 -5.0362 -7.9330 22 7 3.4931 -4.0323 -8.2201 23 14 5.3876 -5.7677 -9.2595 24 1 5.1663 -5.0446 -10.5376 25 1 6.8108 -5.6355 -8.8565 26 1 5.0551 -7.2038 -9.4387 27 6 2.5225 -5.4334 -2.0429 28 1 3.5082 -5.3874 -1.5799 29 6 2.0894 -6.8946 -2.1780 30 6 1.5129 -4.6792 -1.1724 31 1 -0.3633 0.0026 1.0276 32 1 -0.3633 0.8885 -0.5162 33 1 -0.3633 -0.8914 -0.5115 34 1 4.9601 -2.3271 0.4176 35 1 6.1127 0.5882 0.3175 36 1 7.0580 -0.9378 0.7415 37 1 6.5175 -1.9060 -1.5399 38 1 5.5720 -0.3804 -1.9637 39 1 1.0809 -2.5052 -2.9587 40 1 2.4124 -1.5482 -2.2628 41 1 4.0242 -3.3083 -2.8225 42 1 3.1057 -2.8819 -4.2871 43 1 3.2797 -6.6117 -4.3340 44 1 4.5682 -5.4602 -3.9073 45 1 2.9352 -4.2757 -5.8837 46 1 2.9252 -3.6528 -7.5313 47 1 2.8069 -7.4301 -2.7997 48 1 2.0501 -7.3547 -1.1906 49 1 1.1032 -6.9400 -2.6399 50 1 0.5117 -4.8011 -1.5856 51 1 1.5414 -5.0722 -0.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184822055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:19 Heat of formation + Delta-G solvation = 35.820252 kcal Electronic energy + Delta-G solvation = -31969.236908 eV Core-core repulsion = 27871.943411 eV Total energy + Delta-G solvation = -4097.293497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.04086 -41.45052 -39.35280 -38.42003 -36.83532 -35.82401 -35.07649 -33.54604 -32.78635 -31.92297 -29.87717 -28.32930 -28.12632 -25.87465 -25.14508 -24.63888 -23.81169 -23.37532 -22.87714 -21.46645 -20.88588 -20.20509 -19.34513 -18.97533 -18.68537 -17.76467 -17.32929 -16.92135 -16.85532 -16.08294 -15.98678 -15.61699 -15.53077 -15.30983 -14.93453 -14.62914 -14.45444 -14.38661 -14.31323 -14.23916 -13.97854 -13.86538 -13.21252 -13.12698 -13.03172 -12.88315 -12.67677 -12.57574 -12.54942 -12.49097 -12.24037 -12.08430 -11.90084 -11.79555 -11.66726 -11.50484 -11.43731 -11.34961 -11.12005 -10.99791 -10.86621 -10.26003 -9.83640 -9.05564 -8.36708 -5.29931 0.10034 0.74417 1.14890 1.55436 1.59892 1.69013 1.85555 1.93422 2.72621 2.73112 2.93013 3.05719 3.36503 3.42041 3.54088 3.60520 3.63967 3.75368 3.76976 3.88719 3.90243 4.08466 4.10368 4.17994 4.28382 4.34278 4.42425 4.44485 4.50986 4.54506 4.60986 4.63686 4.65871 4.70349 4.72268 4.76843 4.85158 4.91346 4.98434 5.01184 5.02536 5.04130 5.13714 5.13882 5.18725 5.28379 5.39927 5.51340 5.61747 6.11581 6.53344 6.84247 7.05924 7.13328 8.04379 8.14770 9.15438 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.003050 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.311711 B = 9179.375977 C =10072.518794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.372 5.372 4 O 0.091 5.909 5 C 0.061 3.939 6 C -0.113 4.113 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.263 4.263 10 C 0.608 3.392 11 O -0.563 6.563 12 N -0.589 5.589 13 C 0.118 3.882 14 C -0.115 4.115 15 C -0.079 4.079 16 H 0.069 0.931 17 C 0.164 3.836 18 N -0.753 5.753 19 C -0.334 4.334 20 H 0.062 0.938 21 C -0.101 4.101 22 N -0.974 5.974 23 Si 1.124 2.876 24 H -0.293 1.293 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.085 4.085 28 H 0.069 0.931 29 C -0.144 4.144 30 C 0.120 3.880 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.011 0.989 45 H 0.362 0.638 46 H 0.245 0.755 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.086 0.914 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 5.259 19.558 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.081 5.081 4 O 0.032 5.968 5 C -0.003 4.003 6 C -0.133 4.133 7 C -0.179 4.179 8 C -0.190 4.190 9 C -0.270 4.270 10 C 0.395 3.605 11 O -0.443 6.443 12 N -0.319 5.319 13 C -0.004 4.004 14 C -0.153 4.153 15 C -0.098 4.098 16 H 0.087 0.913 17 C 0.038 3.962 18 N -0.398 5.398 19 C -0.465 4.465 20 H 0.081 0.919 21 C -0.292 4.292 22 N -0.622 5.622 23 Si 0.949 3.051 24 H -0.219 1.219 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.105 4.105 28 H 0.088 0.912 29 C -0.202 4.202 30 C -0.002 4.002 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.029 0.971 45 H 0.194 0.806 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.538 6.159 18.586 19.640 hybrid contribution -0.744 -0.574 1.320 1.620 sum -2.282 5.585 19.906 20.800 Atomic orbital electron populations 1.20365 0.83204 1.05108 1.04824 1.25192 0.99786 0.85882 0.99915 1.73619 0.89299 1.23730 1.21427 1.84486 1.21475 1.22553 1.68292 1.23889 0.96138 0.83223 0.97029 1.20614 0.84015 0.99713 1.08912 1.23223 0.95575 1.00220 0.98916 1.23188 0.99908 1.04249 0.91610 1.21729 0.93287 0.95046 1.16979 1.16937 0.76019 0.84166 0.83329 1.90780 1.52829 1.68788 1.31865 1.48062 1.67201 1.11230 1.05445 1.21746 1.00255 0.95624 0.82766 1.21776 0.98804 0.95270 0.99493 1.21241 0.98965 0.94466 0.95093 0.91273 1.20802 0.96106 0.95709 0.83630 1.42553 1.49658 1.40746 1.06828 1.20360 1.18475 1.14930 0.92751 0.91948 1.27081 1.03276 0.98751 1.00110 1.71000 1.28285 1.27355 1.35594 0.82669 0.74144 0.74902 0.73369 1.21935 1.20487 1.20542 1.21338 0.99458 0.95809 0.93910 0.91207 1.21802 1.01827 0.94026 1.02531 1.21812 0.98495 0.78193 1.01659 0.88602 0.88473 0.89292 0.84621 0.87297 0.85350 0.86406 0.88395 0.89757 0.90090 0.91763 0.91932 0.95685 0.97118 0.80575 0.94506 0.92613 0.90904 0.91998 0.89572 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.49 71.24 0.75 -0.53 16 2 C 0.05 1.26 7.59 45.16 0.34 1.60 16 3 N -0.37 -9.35 12.01 -44.77 -0.54 -9.89 16 4 O 0.09 2.18 10.86 76.97 0.84 3.01 16 5 C 0.06 1.37 6.90 25.48 0.18 1.55 16 6 C -0.11 -2.07 6.15 -11.54 -0.07 -2.14 16 7 C -0.14 -1.91 10.18 30.60 0.31 -1.59 16 8 C -0.15 -2.45 10.23 30.60 0.31 -2.13 16 9 C -0.26 -6.46 4.22 -18.74 -0.08 -6.54 16 10 C 0.61 15.98 7.52 86.66 0.65 16.63 16 11 O -0.56 -18.06 16.52 -4.04 -0.07 -18.13 16 12 N -0.59 -13.56 2.97 -822.88 -2.45 -16.01 16 13 C 0.12 2.67 6.34 86.37 0.55 3.22 16 14 C -0.12 -3.14 5.25 30.67 0.16 -2.98 16 15 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 16 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.16 6.18 5.41 86.38 0.47 6.65 16 18 N -0.75 -36.52 5.32 -343.47 -1.83 -38.34 16 19 C -0.33 -18.44 9.99 84.03 0.84 -17.60 16 20 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 21 C -0.10 -5.73 5.50 84.86 0.47 -5.26 16 22 N -0.97 -59.58 13.70 21.65 0.30 -59.28 16 23 Si 1.12 51.05 29.92 68.60 2.05 53.10 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 C -0.09 -1.96 2.41 -10.73 -0.03 -1.99 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 C -0.14 -3.02 8.82 71.98 0.63 -2.38 16 30 C 0.12 2.56 5.71 86.35 0.49 3.06 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.11 1.41 8.02 -2.39 -0.02 1.39 16 36 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.83 6.26 -2.39 -0.01 1.81 16 41 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.06 2.02 7.15 -2.39 -0.02 2.00 16 43 H 0.03 0.97 6.14 -2.39 -0.01 0.95 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.36 17.99 5.68 -92.71 -0.53 17.47 16 46 H 0.24 14.80 6.77 -92.71 -0.63 14.17 16 47 H 0.05 1.33 6.29 -2.39 -0.02 1.31 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.09 2.07 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -70.87 410.33 4.82 -66.05 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.55 Total: 32.18 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.96 Total: -12.70 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -4.51 Total: -123.52 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.77 Total: -15.12 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -70.87 4.82 -66.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.871 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds