Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30016 * 127.33289 * 2 1 4 4 O 1.20657 * 112.29761 * 180.26919 * 3 2 1 5 5 C 1.33497 * 113.15868 * 359.73108 * 4 3 2 6 6 C 1.50697 * 126.82906 * 179.97438 * 5 4 3 7 7 C 1.53000 * 117.50194 * 8.62426 * 6 5 4 8 8 C 1.52999 * 117.50137 * 299.99780 * 6 5 4 9 9 C 1.37359 * 106.34063 * 359.97438 * 5 4 3 10 10 C 1.47402 * 128.56483 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99403 * 90.00687 * 10 9 5 12 12 N 1.34766 * 120.00200 * 270.00288 * 10 9 5 13 13 C 1.46929 * 120.63348 * 0.02562 * 12 10 9 14 14 C 1.53196 * 108.77486 * 233.63046 * 13 12 10 15 15 C 1.53035 * 109.30995 * 305.36045 * 14 13 12 16 16 H 1.08999 * 109.46561 * 301.34510 * 15 14 13 17 17 C 1.53004 * 109.45754 * 181.38857 * 15 14 13 18 18 N 1.46497 * 109.47375 * 65.00047 * 17 15 14 19 19 C 1.36937 * 120.00024 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99911 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00204 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99892 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46741 * 90.00446 * 23 21 19 25 25 H 1.48499 * 109.46977 * 210.00015 * 23 21 19 26 26 H 1.48494 * 109.46903 * 330.00324 * 23 21 19 27 27 C 1.53042 * 109.54021 * 61.36728 * 15 14 13 28 28 H 1.09004 * 109.49547 * 58.61806 * 27 15 14 29 29 C 1.52994 * 109.49646 * 178.67720 * 27 15 14 30 30 C 1.46924 * 120.63242 * 180.02562 * 12 10 9 31 31 H 1.08994 * 109.47674 * 270.15184 * 1 2 3 32 32 H 1.09004 * 109.46867 * 30.15512 * 1 2 3 33 33 H 1.09001 * 109.46690 * 150.15038 * 1 2 3 34 34 H 1.09003 * 115.54855 * 154.33127 * 6 5 4 35 35 H 1.09003 * 117.49742 * 359.97438 * 7 6 5 36 36 H 1.09000 * 117.50107 * 145.01719 * 7 6 5 37 37 H 1.08998 * 117.49826 * 214.98224 * 8 6 5 38 38 H 1.09004 * 117.49806 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.59209 * 113.83860 * 13 12 10 40 40 H 1.09003 * 109.58217 * 353.41142 * 13 12 10 41 41 H 1.09001 * 109.49651 * 65.31212 * 14 13 12 42 42 H 1.08996 * 109.49316 * 185.37450 * 14 13 12 43 43 H 1.09001 * 109.46888 * 185.00003 * 17 15 14 44 44 H 1.09004 * 109.47243 * 304.99681 * 17 15 14 45 45 H 0.97005 * 119.99803 * 359.97438 * 18 17 15 46 46 H 0.96997 * 120.00129 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47178 * 60.00867 * 29 27 15 48 48 H 1.09004 * 109.46673 * 179.97438 * 29 27 15 49 49 H 1.08992 * 109.48072 * 299.99991 * 29 27 15 50 50 H 1.08999 * 109.58511 * 6.58326 * 30 12 10 51 51 H 1.09005 * 109.70744 * 246.22870 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 -0.0052 5 6 3.6494 -0.6008 -0.0040 6 6 4.9712 -1.3246 -0.0098 7 6 6.2364 -0.4867 0.1854 8 6 5.9104 -1.0708 -1.1907 9 6 2.3992 -1.1696 0.0038 10 6 2.0401 -2.5992 0.0077 11 8 1.8977 -3.1874 1.0625 12 7 1.8694 -3.2544 -1.1576 13 6 2.0384 -2.5575 -2.4400 14 6 0.7774 -2.7661 -3.2845 15 6 0.4986 -4.2651 -3.4158 16 1 1.3559 -4.7550 -3.8775 17 6 -0.7405 -4.4787 -4.2875 18 7 -0.4653 -4.0148 -5.6496 19 6 -1.4343 -4.1058 -6.6128 20 1 -2.4014 -4.5200 -6.3685 21 6 -1.1734 -3.6667 -7.9035 22 7 -2.1046 -3.7547 -8.8295 23 14 0.4996 -2.9510 -8.3263 24 1 1.4030 -4.0389 -8.7799 25 1 0.3491 -1.9480 -9.4110 26 1 1.0764 -2.2974 -7.1241 27 6 0.2555 -4.8640 -2.0285 28 1 -0.5868 -4.3581 -1.5564 29 6 -0.0556 -6.3559 -2.1638 30 6 1.5109 -4.6791 -1.1698 31 1 -0.3634 0.0027 1.0276 32 1 -0.3633 0.8886 -0.5163 33 1 -0.3633 -0.8914 -0.5115 34 1 4.9600 -2.3271 0.4180 35 1 6.1127 0.5882 0.3176 36 1 7.0579 -0.9378 0.7419 37 1 6.5174 -1.9063 -1.5394 38 1 5.5724 -0.3800 -1.9631 39 1 2.9020 -2.9643 -2.9661 40 1 2.1858 -1.4925 -2.2604 41 1 -0.0693 -2.2796 -2.8003 42 1 0.9272 -2.3353 -4.2744 43 1 -0.9915 -5.5392 -4.3086 44 1 -1.5772 -3.9155 -3.8739 45 1 0.4032 -3.6424 -5.8689 46 1 -1.9223 -3.4475 -9.7313 47 1 0.7873 -6.8616 -2.6348 48 1 -0.2283 -6.7820 -1.1754 49 1 -0.9469 -6.4872 -2.7771 50 1 1.3103 -5.0142 -0.1522 51 1 2.3309 -5.2609 -1.5910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184822057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = 57.764134 kcal Electronic energy + Delta-G solvation = -31829.014047 eV Core-core repulsion = 27732.672108 eV Total energy + Delta-G solvation = -4096.341939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.16275 -40.40991 -38.22669 -37.81080 -35.23381 -34.85606 -33.67051 -32.16482 -31.91999 -30.74254 -29.06937 -27.35411 -27.17846 -24.81594 -23.96089 -23.35840 -22.88647 -22.55558 -21.30202 -20.48357 -19.84227 -19.38221 -18.10149 -17.81985 -17.55984 -16.84267 -16.44594 -16.13312 -15.22052 -14.90868 -14.73668 -14.51432 -14.23194 -14.08607 -13.66216 -13.62705 -13.47708 -13.42228 -13.22888 -13.06214 -12.90899 -12.49221 -12.42533 -12.09315 -12.06686 -12.00374 -11.83249 -11.72560 -11.53839 -11.37831 -11.04022 -10.93667 -10.92926 -10.57028 -10.49061 -10.35935 -10.21169 -10.12617 -10.02845 -9.61093 -9.44920 -8.92800 -8.79841 -7.24872 -5.79616 -3.14917 0.94560 1.64328 2.14967 2.44308 2.83766 3.30505 3.31792 3.34735 3.41521 3.73813 3.83351 4.21780 4.27923 4.38712 4.44458 4.55333 4.65292 4.72926 4.81288 4.89497 4.96613 5.04131 5.14391 5.14877 5.21877 5.22959 5.29247 5.32846 5.37018 5.43358 5.50082 5.51284 5.55266 5.59239 5.63148 5.66503 5.71870 5.74252 5.78922 5.84843 6.07023 6.11860 6.15861 6.28176 6.33352 6.39337 6.69405 6.76826 7.11439 7.85420 7.94699 7.96978 8.39540 9.18643 9.90902 10.10712 11.39026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003133 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.458500 B = 8933.965295 C = 9710.469405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 N -0.353 5.353 4 O 0.097 5.903 5 C 0.046 3.954 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.237 4.237 10 C 0.602 3.398 11 O -0.531 6.531 12 N -0.594 5.594 13 C 0.108 3.892 14 C -0.127 4.127 15 C -0.093 4.093 16 H 0.072 0.928 17 C 0.161 3.839 18 N -0.755 5.755 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.096 4.096 28 H 0.075 0.925 29 C -0.148 4.148 30 C 0.117 3.883 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.025 0.975 45 H 0.359 0.641 46 H 0.259 0.741 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.354 3.974 20.187 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.059 5.059 4 O 0.035 5.965 5 C -0.018 4.018 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.244 4.244 10 C 0.388 3.612 11 O -0.408 6.408 12 N -0.326 5.326 13 C -0.015 4.015 14 C -0.165 4.165 15 C -0.112 4.112 16 H 0.091 0.909 17 C 0.034 3.966 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.116 4.116 28 H 0.094 0.906 29 C -0.205 4.205 30 C -0.004 4.004 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.111 0.889 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.863 4.926 20.630 25.899 hybrid contribution 0.956 -0.153 -0.566 1.121 sum 15.818 4.773 20.064 25.992 Atomic orbital electron populations 1.20259 0.84930 1.04515 1.03970 1.24757 0.98657 0.86283 1.00708 1.73641 0.88957 1.23138 1.20209 1.84507 1.21617 1.22249 1.68095 1.23487 0.95418 0.83575 0.99273 1.20505 0.84157 0.99545 1.07156 1.23098 0.96657 1.00345 0.99678 1.23152 1.00566 1.03952 0.91635 1.21737 0.92547 0.95353 1.14789 1.16889 0.76775 0.83891 0.83647 1.90807 1.51187 1.68024 1.30796 1.48049 1.67770 1.11180 1.05649 1.21844 0.99086 0.97119 0.83401 1.21961 0.96806 0.97335 1.00442 1.21405 1.00128 0.94812 0.94862 0.90918 1.20735 0.93742 0.97541 0.84586 1.42728 1.14492 1.76291 1.06598 1.19058 0.94674 1.34780 0.88750 0.89278 1.24675 0.97270 1.01332 0.95927 1.69698 1.32800 1.53089 1.02687 0.86560 0.85272 0.79056 0.77658 1.21091 1.21743 1.20443 1.21456 0.97358 0.97242 0.95536 0.90612 1.21838 1.02719 0.94292 1.01690 1.21791 0.97059 0.79640 1.01956 0.89540 0.89626 0.89657 0.84414 0.87563 0.87333 0.87156 0.87828 0.90921 0.90388 0.91338 0.89818 0.94869 0.95728 0.80773 0.93057 0.92456 0.92803 0.91068 0.88907 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.49 36.01 0.38 -0.40 16 2 C 0.06 0.70 7.54 -79.77 -0.60 0.10 16 3 N -0.35 -4.46 12.01 34.78 0.42 -4.04 16 4 O 0.10 1.11 10.86 18.64 0.20 1.31 16 5 C 0.05 0.48 7.00 -34.63 -0.24 0.24 16 6 C -0.09 -0.73 6.15 -91.77 -0.56 -1.30 16 7 C -0.16 -0.92 10.18 -26.73 -0.27 -1.19 16 8 C -0.16 -0.93 10.23 -26.73 -0.27 -1.20 16 9 C -0.24 -2.86 4.19 -102.89 -0.43 -3.29 16 10 C 0.60 7.81 7.52 -12.53 -0.09 7.72 16 11 O -0.53 -8.43 16.52 5.27 0.09 -8.34 16 12 N -0.59 -6.81 2.97 -174.02 -0.52 -7.33 16 13 C 0.11 1.19 6.34 -3.71 -0.02 1.16 16 14 C -0.13 -1.66 5.25 -26.61 -0.14 -1.80 16 15 C -0.09 -1.27 1.73 -90.58 -0.16 -1.43 16 16 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 17 C 0.16 2.89 5.41 -4.04 -0.02 2.87 16 18 N -0.76 -17.12 5.12 -59.91 -0.31 -17.42 16 19 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 23 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 27 C -0.10 -1.11 2.42 -90.49 -0.22 -1.32 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 C -0.15 -1.58 8.82 37.15 0.33 -1.25 16 30 C 0.12 1.27 5.72 -3.70 -0.02 1.25 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.85 6.30 -51.93 -0.33 0.52 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.24 7.15 -51.93 -0.37 0.87 16 43 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.36 7.88 4.71 -40.82 -0.19 7.69 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 50 H 0.09 1.07 7.00 -51.93 -0.36 0.70 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -33.45 408.99 -8.75 -42.20 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.25 Total: 5.64 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.61 Total: -6.72 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.37 Total: -57.12 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.29 Total: -7.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.45 -8.75 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.964 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds