Wall clock time and date at job start Wed Apr 1 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30016 * 127.33289 * 2 1 4 4 O 1.20657 * 112.29761 * 180.26919 * 3 2 1 5 5 C 1.33497 * 113.15868 * 359.73108 * 4 3 2 6 6 C 1.50697 * 126.82906 * 179.97438 * 5 4 3 7 7 C 1.53000 * 117.50194 * 8.62426 * 6 5 4 8 8 C 1.52999 * 117.50137 * 299.99780 * 6 5 4 9 9 C 1.37359 * 106.34063 * 359.97438 * 5 4 3 10 10 C 1.47402 * 128.56483 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99403 * 90.00687 * 10 9 5 12 12 N 1.34766 * 120.00200 * 270.00288 * 10 9 5 13 13 C 1.46929 * 120.63348 * 0.02562 * 12 10 9 14 14 C 1.53196 * 108.77486 * 233.63046 * 13 12 10 15 15 C 1.53035 * 109.30995 * 305.36045 * 14 13 12 16 16 H 1.08999 * 109.46561 * 301.34510 * 15 14 13 17 17 C 1.53004 * 109.45754 * 181.38857 * 15 14 13 18 18 N 1.46497 * 109.47375 * 65.00047 * 17 15 14 19 19 C 1.36937 * 120.00024 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99911 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00204 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99892 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46741 * 90.00446 * 23 21 19 25 25 H 1.48499 * 109.46977 * 210.00015 * 23 21 19 26 26 H 1.48494 * 109.46903 * 330.00324 * 23 21 19 27 27 C 1.53042 * 109.54021 * 61.36728 * 15 14 13 28 28 H 1.09004 * 109.49547 * 58.61806 * 27 15 14 29 29 C 1.52994 * 109.49646 * 178.67720 * 27 15 14 30 30 C 1.46924 * 120.63242 * 180.02562 * 12 10 9 31 31 H 1.08994 * 109.47674 * 270.15184 * 1 2 3 32 32 H 1.09004 * 109.46867 * 30.15512 * 1 2 3 33 33 H 1.09001 * 109.46690 * 150.15038 * 1 2 3 34 34 H 1.09003 * 115.54855 * 154.33127 * 6 5 4 35 35 H 1.09003 * 117.49742 * 359.97438 * 7 6 5 36 36 H 1.09000 * 117.50107 * 145.01719 * 7 6 5 37 37 H 1.08998 * 117.49826 * 214.98224 * 8 6 5 38 38 H 1.09004 * 117.49806 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.59209 * 113.83860 * 13 12 10 40 40 H 1.09003 * 109.58217 * 353.41142 * 13 12 10 41 41 H 1.09001 * 109.49651 * 65.31212 * 14 13 12 42 42 H 1.08996 * 109.49316 * 185.37450 * 14 13 12 43 43 H 1.09001 * 109.46888 * 185.00003 * 17 15 14 44 44 H 1.09004 * 109.47243 * 304.99681 * 17 15 14 45 45 H 0.97005 * 119.99803 * 359.97438 * 18 17 15 46 46 H 0.96997 * 120.00129 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47178 * 60.00867 * 29 27 15 48 48 H 1.09004 * 109.46673 * 179.97438 * 29 27 15 49 49 H 1.08992 * 109.48072 * 299.99991 * 29 27 15 50 50 H 1.08999 * 109.58511 * 6.58326 * 30 12 10 51 51 H 1.09005 * 109.70744 * 246.22870 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 -0.0052 5 6 3.6494 -0.6008 -0.0040 6 6 4.9712 -1.3246 -0.0098 7 6 6.2364 -0.4867 0.1854 8 6 5.9104 -1.0708 -1.1907 9 6 2.3992 -1.1696 0.0038 10 6 2.0401 -2.5992 0.0077 11 8 1.8977 -3.1874 1.0625 12 7 1.8694 -3.2544 -1.1576 13 6 2.0384 -2.5575 -2.4400 14 6 0.7774 -2.7661 -3.2845 15 6 0.4986 -4.2651 -3.4158 16 1 1.3559 -4.7550 -3.8775 17 6 -0.7405 -4.4787 -4.2875 18 7 -0.4653 -4.0148 -5.6496 19 6 -1.4343 -4.1058 -6.6128 20 1 -2.4014 -4.5200 -6.3685 21 6 -1.1734 -3.6667 -7.9035 22 7 -2.1046 -3.7547 -8.8295 23 14 0.4996 -2.9510 -8.3263 24 1 1.4030 -4.0389 -8.7799 25 1 0.3491 -1.9480 -9.4110 26 1 1.0764 -2.2974 -7.1241 27 6 0.2555 -4.8640 -2.0285 28 1 -0.5868 -4.3581 -1.5564 29 6 -0.0556 -6.3559 -2.1638 30 6 1.5109 -4.6791 -1.1698 31 1 -0.3634 0.0027 1.0276 32 1 -0.3633 0.8886 -0.5163 33 1 -0.3633 -0.8914 -0.5115 34 1 4.9600 -2.3271 0.4180 35 1 6.1127 0.5882 0.3176 36 1 7.0579 -0.9378 0.7419 37 1 6.5174 -1.9063 -1.5394 38 1 5.5724 -0.3800 -1.9631 39 1 2.9020 -2.9643 -2.9661 40 1 2.1858 -1.4925 -2.2604 41 1 -0.0693 -2.2796 -2.8003 42 1 0.9272 -2.3353 -4.2744 43 1 -0.9915 -5.5392 -4.3086 44 1 -1.5772 -3.9155 -3.8739 45 1 0.4032 -3.6424 -5.8689 46 1 -1.9223 -3.4475 -9.7313 47 1 0.7873 -6.8616 -2.6348 48 1 -0.2283 -6.7820 -1.1754 49 1 -0.9469 -6.4872 -2.7771 50 1 1.3103 -5.0142 -0.1522 51 1 2.3309 -5.2609 -1.5910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184822057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:22 Heat of formation + Delta-G solvation = 38.416192 kcal Electronic energy + Delta-G solvation = -31829.853037 eV Core-core repulsion = 27732.672108 eV Total energy + Delta-G solvation = -4097.180929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.03485 -41.40490 -39.32125 -38.36263 -36.71269 -35.79546 -34.94708 -33.63021 -32.76976 -32.37569 -29.89430 -28.73418 -28.09305 -25.93767 -24.90358 -24.55182 -23.72579 -23.29942 -22.68940 -21.50333 -20.79141 -20.27840 -19.63077 -18.94755 -18.62478 -17.71165 -17.29192 -16.95808 -16.63372 -16.15154 -15.90338 -15.63616 -15.49115 -15.06741 -14.83910 -14.61810 -14.56849 -14.37171 -14.35362 -14.11895 -14.00312 -13.90677 -13.27595 -13.16518 -13.09539 -12.94201 -12.88261 -12.69872 -12.53511 -12.43674 -12.20329 -12.18201 -11.99393 -11.84750 -11.63597 -11.60177 -11.45098 -11.32236 -11.24466 -10.98784 -10.89865 -10.22867 -9.78467 -9.25896 -8.01407 -5.34593 0.14034 0.75390 1.17780 1.37353 1.42661 1.49896 1.61580 1.97718 2.49782 2.78910 2.93929 3.08412 3.30139 3.41801 3.53960 3.57942 3.68066 3.76503 3.84475 3.94054 3.95856 4.04853 4.12677 4.23700 4.33361 4.38970 4.46318 4.47463 4.48402 4.60352 4.61967 4.67124 4.71539 4.75678 4.77649 4.81704 4.90712 4.95508 5.00588 5.04718 5.07486 5.09398 5.19447 5.19846 5.24143 5.33915 5.45582 5.57272 5.77674 6.16149 6.22583 6.88717 7.09586 7.10110 7.86150 8.06197 9.20503 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003133 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.458500 B = 8933.965295 C = 9710.469405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.051 3.949 3 N -0.373 5.373 4 O 0.094 5.906 5 C 0.060 3.940 6 C -0.115 4.115 7 C -0.150 4.150 8 C -0.144 4.144 9 C -0.262 4.262 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.589 5.589 13 C 0.117 3.883 14 C -0.125 4.125 15 C -0.082 4.082 16 H 0.083 0.917 17 C 0.159 3.841 18 N -0.755 5.755 19 C -0.233 4.233 20 H 0.052 0.948 21 C -0.067 4.067 22 N -0.987 5.987 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.245 1.245 27 C -0.087 4.087 28 H 0.066 0.934 29 C -0.145 4.145 30 C 0.121 3.879 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.014 0.986 45 H 0.367 0.633 46 H 0.257 0.743 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.672 4.053 21.142 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 N -0.081 5.081 4 O 0.034 5.966 5 C -0.003 4.003 6 C -0.135 4.135 7 C -0.187 4.187 8 C -0.181 4.181 9 C -0.269 4.269 10 C 0.395 3.605 11 O -0.445 6.445 12 N -0.319 5.319 13 C -0.006 4.006 14 C -0.163 4.163 15 C -0.101 4.101 16 H 0.101 0.899 17 C 0.033 3.967 18 N -0.401 5.401 19 C -0.364 4.364 20 H 0.070 0.930 21 C -0.258 4.258 22 N -0.638 5.638 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.226 1.226 26 H -0.169 1.169 27 C -0.107 4.107 28 H 0.084 0.916 29 C -0.203 4.203 30 C -0.001 4.001 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.206 4.998 21.626 28.708 hybrid contribution -0.168 -0.224 -0.808 0.855 sum 18.039 4.774 20.817 27.956 Atomic orbital electron populations 1.20330 0.83937 1.04808 1.04619 1.25089 0.99481 0.86270 1.00217 1.73627 0.89415 1.23673 1.21391 1.84481 1.21248 1.22759 1.68115 1.23985 0.96224 0.83091 0.96998 1.20656 0.83579 0.99724 1.09493 1.23222 0.95675 1.00084 0.99722 1.23256 0.99277 1.04304 0.91265 1.21714 0.93284 0.94941 1.16960 1.16935 0.76142 0.84051 0.83402 1.90786 1.52892 1.68814 1.31959 1.48065 1.66983 1.11400 1.05482 1.21807 0.98506 0.97504 0.82739 1.21895 0.97753 0.96557 1.00081 1.21296 0.98017 0.95643 0.95104 0.89896 1.20884 0.95793 0.96950 0.83088 1.42692 1.13675 1.76345 1.07357 1.19023 0.94307 1.33139 0.89950 0.92992 1.25550 1.01823 1.02613 0.95790 1.69897 1.35625 1.55129 1.03132 0.85407 0.80010 0.78225 0.78154 1.20219 1.22590 1.16944 1.21357 0.97607 0.97607 0.94137 0.91569 1.21809 1.02329 0.93724 1.02436 1.21819 0.97172 0.79480 1.01621 0.88703 0.88809 0.89816 0.84291 0.87810 0.85393 0.85326 0.88150 0.88813 0.90171 0.92121 0.91120 0.94947 0.96843 0.79939 0.93398 0.91494 0.91259 0.92686 0.89312 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.49 71.24 0.75 -0.77 16 2 C 0.05 1.20 7.54 45.16 0.34 1.54 16 3 N -0.37 -9.18 12.01 -44.78 -0.54 -9.72 16 4 O 0.09 2.06 10.86 76.95 0.84 2.89 16 5 C 0.06 1.19 7.00 25.48 0.18 1.37 16 6 C -0.12 -1.53 6.15 -11.54 -0.07 -1.60 16 7 C -0.15 -1.30 10.18 30.60 0.31 -0.99 16 8 C -0.14 -1.26 10.23 30.60 0.31 -0.95 16 9 C -0.26 -6.02 4.19 -18.74 -0.08 -6.10 16 10 C 0.61 14.96 7.52 86.66 0.65 15.61 16 11 O -0.56 -17.46 16.52 -4.06 -0.07 -17.53 16 12 N -0.59 -12.19 2.97 -822.75 -2.44 -14.64 16 13 C 0.12 2.24 6.34 86.36 0.55 2.79 16 14 C -0.12 -3.01 5.25 30.67 0.16 -2.85 16 15 C -0.08 -2.06 1.73 -10.77 -0.02 -2.08 16 16 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 17 C 0.16 5.61 5.41 86.38 0.47 6.08 16 18 N -0.75 -33.52 5.12 -343.45 -1.76 -35.28 16 19 C -0.23 -13.11 10.47 84.03 0.88 -12.23 16 20 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.99 -63.07 13.97 21.65 0.30 -62.77 16 23 Si 0.96 43.96 27.74 68.60 1.90 45.87 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.25 -9.83 6.52 99.48 0.65 -9.18 16 27 C -0.09 -1.84 2.42 -10.71 -0.03 -1.87 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 C -0.15 -2.82 8.82 71.98 0.63 -2.18 16 30 C 0.12 2.30 5.72 86.37 0.49 2.80 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.14 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.10 0.97 8.02 -2.39 -0.02 0.95 16 36 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.57 6.30 -2.39 -0.02 1.55 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.92 7.15 -2.39 -0.02 1.91 16 43 H 0.03 1.18 6.14 -2.39 -0.01 1.16 16 44 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 45 H 0.37 15.20 4.71 -92.70 -0.44 14.76 16 46 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.05 1.25 6.29 -2.39 -0.02 1.23 16 50 H 0.09 1.86 7.00 -2.39 -0.02 1.84 16 51 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -73.91 408.99 4.67 -69.24 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.44 Total: 26.77 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 6.00 Total: -4.83 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.44 Total: -122.41 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.77 Total: -14.64 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.87 kcal Total: -73.91 4.67 -69.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.656 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds