Wall clock time and date at job start Wed Apr 1 2020 04:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41376 * 126.80258 * 2 1 4 4 C 1.35452 * 103.98595 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.77791 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.54720 * 330.47616 * 5 4 3 7 7 O 1.21287 * 119.99513 * 100.56650 * 6 5 4 8 8 N 1.34774 * 120.00294 * 280.56623 * 6 5 4 9 9 C 1.46930 * 120.62877 * 355.66504 * 8 6 5 10 10 C 1.53191 * 108.88646 * 233.55498 * 9 8 6 11 11 C 1.53068 * 109.30046 * 305.57656 * 10 9 8 12 12 H 1.09002 * 109.33642 * 301.13978 * 11 10 9 13 13 C 1.52996 * 109.45580 * 181.24626 * 11 10 9 14 14 N 1.46501 * 109.47160 * 64.79247 * 13 11 10 15 15 C 1.36937 * 119.99947 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99886 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99730 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99930 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47141 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47252 * 120.00144 * 19 17 15 22 22 H 1.48504 * 109.47296 * 240.00658 * 19 17 15 23 23 C 1.53039 * 109.65747 * 61.15196 * 11 10 9 24 24 H 1.08999 * 109.52486 * 178.73464 * 23 11 10 25 25 C 1.53003 * 109.49628 * 58.65454 * 23 11 10 26 26 C 1.46929 * 120.62942 * 175.67981 * 8 6 5 27 27 C 1.53001 * 117.52123 * 116.18146 * 5 4 3 28 28 C 1.52997 * 117.49806 * 184.81103 * 5 4 3 29 29 O 1.34036 * 106.44374 * 0.24240 * 4 3 2 30 30 N 1.20922 * 111.57112 * 359.56408 * 29 4 3 31 31 H 1.08998 * 109.47673 * 89.99130 * 1 2 3 32 32 H 1.09007 * 109.47046 * 209.99690 * 1 2 3 33 33 H 1.08997 * 109.47008 * 329.98982 * 1 2 3 34 34 H 1.08001 * 128.00776 * 0.05188 * 3 2 1 35 35 H 1.08993 * 109.58260 * 353.41260 * 9 8 6 36 36 H 1.08994 * 109.58557 * 113.69574 * 9 8 6 37 37 H 1.08994 * 109.49940 * 65.39032 * 10 9 8 38 38 H 1.09004 * 109.49124 * 185.48534 * 10 9 8 39 39 H 1.09007 * 109.47246 * 184.78716 * 13 11 10 40 40 H 1.08994 * 109.46884 * 304.78896 * 13 11 10 41 41 H 0.97007 * 119.99671 * 359.97438 * 14 13 11 42 42 H 0.97005 * 119.99761 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47030 * 300.16641 * 25 23 11 44 44 H 1.09002 * 109.46857 * 60.16265 * 25 23 11 45 45 H 1.09001 * 109.47442 * 180.15700 * 25 23 11 46 46 H 1.09004 * 109.58458 * 246.15886 * 26 8 6 47 47 H 1.08996 * 109.58710 * 6.44198 * 26 8 6 48 48 H 1.08995 * 117.49755 * 214.97259 * 27 5 4 49 49 H 1.08998 * 117.49698 * 359.97438 * 27 5 4 50 50 H 1.09000 * 117.50205 * 359.97405 * 28 5 4 51 51 H 1.09004 * 117.49477 * 144.96965 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3695 -0.0014 6 6 4.8636 2.7187 -0.6716 7 8 4.7775 3.7262 -0.0018 8 7 4.9247 2.8058 -2.0151 9 6 5.1243 1.6030 -2.8350 10 6 6.3225 1.8283 -3.7625 11 6 6.1050 3.1120 -4.5673 12 1 5.1849 3.0242 -5.1451 13 6 7.2853 3.3240 -5.5174 14 7 7.3173 2.2427 -6.5053 15 6 8.2938 2.2209 -7.4651 16 1 9.0401 3.0010 -7.4940 17 6 8.3244 1.1960 -8.4008 18 7 7.4145 0.2456 -8.3658 19 14 9.6560 1.1665 -9.7105 20 1 10.5498 2.3392 -9.5342 21 1 10.4484 -0.0828 -9.5828 22 1 9.0287 1.2196 -11.0555 23 6 5.9967 4.3048 -3.6145 24 1 5.8644 5.2205 -4.1908 25 6 7.2738 4.4079 -2.7782 26 6 4.7933 4.1055 -2.6878 27 6 5.8156 1.2111 1.2158 28 6 6.1958 0.5606 -0.1158 29 8 3.4537 -0.7253 -0.0063 30 7 2.2868 -1.0424 -0.0006 31 1 -0.3634 0.0002 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 2.0709 2.1743 0.0008 35 1 5.3189 0.7479 -2.1877 36 1 4.2313 1.4146 -3.4308 37 1 7.2305 1.9239 -3.1672 38 1 6.4202 0.9821 -4.4426 39 1 7.1729 4.2801 -6.0288 40 1 8.2147 3.3236 -4.9479 41 1 6.6471 1.5418 -6.4791 42 1 7.4357 -0.4704 -9.0200 43 1 7.4063 3.4915 -2.2030 44 1 8.1297 4.5497 -3.4380 45 1 7.1951 5.2558 -2.0978 46 1 3.8742 4.1225 -3.2735 47 1 4.7669 4.9012 -1.9433 48 1 6.3885 2.0828 1.5319 49 1 5.4763 0.5555 2.0177 50 1 6.1069 -0.5232 -0.1900 51 1 7.0189 1.0043 -0.6761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185001832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:36 Heat of formation + Delta-G solvation = 62.171560 kcal Electronic energy + Delta-G solvation = -31854.898873 eV Core-core repulsion = 27758.748054 eV Total energy + Delta-G solvation = -4096.150819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.19806 -40.85925 -38.59441 -36.96931 -35.04481 -35.00508 -33.36239 -31.80043 -31.77837 -30.36186 -28.97998 -27.28337 -27.04998 -24.83464 -23.72333 -23.39411 -23.13071 -22.76635 -21.63777 -20.77055 -19.45306 -18.38148 -17.98079 -17.82732 -17.14280 -16.76639 -16.17215 -15.65550 -15.19445 -14.97638 -14.62842 -14.34856 -14.06638 -13.90654 -13.77434 -13.66753 -13.54808 -13.42718 -13.28612 -12.96013 -12.78074 -12.52223 -12.48895 -12.23083 -11.97949 -11.75771 -11.62764 -11.43980 -11.34821 -11.13603 -11.05672 -10.94897 -10.80058 -10.38029 -10.31358 -10.25805 -10.21065 -9.98779 -9.81371 -9.66142 -9.44512 -8.88220 -8.68910 -6.92400 -5.78481 -3.06457 1.11480 1.94627 2.05741 2.60179 3.02548 3.31227 3.41826 3.47853 3.49776 3.89100 3.91415 4.10827 4.37692 4.43708 4.57077 4.71809 4.80053 4.90525 4.94175 4.97069 5.11608 5.16354 5.18096 5.21343 5.23184 5.26218 5.42703 5.44387 5.48004 5.51614 5.55446 5.59084 5.66727 5.69448 5.74427 5.81635 5.83001 5.84091 6.02256 6.05927 6.15905 6.25541 6.33812 6.41993 6.43257 6.62778 6.78670 6.91069 7.22650 7.69301 7.92509 7.99466 8.40840 9.52148 10.10323 10.44706 11.44481 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.002722 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.987455 B =10282.510663 C =11198.553739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.217 4.217 4 C 0.016 3.984 5 C -0.091 4.091 6 C 0.562 3.438 7 O -0.532 6.532 8 N -0.592 5.592 9 C 0.101 3.899 10 C -0.126 4.126 11 C -0.089 4.089 12 H 0.071 0.929 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.098 4.098 24 H 0.083 0.917 25 C -0.144 4.144 26 C 0.116 3.884 27 C -0.125 4.125 28 C -0.151 4.151 29 O 0.104 5.896 30 N -0.362 5.362 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.170 0.830 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.117 0.883 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 2.935 20.382 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C -0.238 4.238 4 C -0.048 4.048 5 C -0.096 4.096 6 C 0.348 3.652 7 O -0.409 6.409 8 N -0.324 5.324 9 C -0.021 4.021 10 C -0.164 4.164 11 C -0.108 4.108 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.117 4.117 24 H 0.101 0.899 25 C -0.201 4.201 26 C -0.006 4.006 27 C -0.163 4.163 28 C -0.188 4.188 29 O 0.038 5.962 30 N -0.066 5.066 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.133 0.867 49 H 0.127 0.873 50 H 0.135 0.865 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.026 2.206 20.619 23.034 hybrid contribution 0.316 0.453 -0.995 1.138 sum -9.710 2.659 19.625 22.056 Atomic orbital electron populations 1.20181 0.85761 1.03793 1.03600 1.23577 0.99123 0.88572 1.02631 1.22332 0.90861 1.01220 1.09412 1.22725 0.95318 0.83691 1.03051 1.19306 0.87803 0.94946 1.07512 1.18846 0.76476 0.87969 0.81926 1.90704 1.50018 1.36516 1.63642 1.48017 1.70178 1.09244 1.04914 1.21985 0.99517 0.86524 0.94101 1.21967 0.96866 0.99491 0.98032 1.21313 1.00367 0.93496 0.95611 0.91063 1.20705 0.94318 0.92050 0.89796 1.42392 1.34754 1.27424 1.33078 1.19262 1.05220 1.06804 1.05542 0.91250 1.24721 0.98990 0.97616 0.99693 1.69660 1.36093 1.14334 1.38151 0.86141 0.81197 0.77231 0.81778 1.20608 1.21889 1.21907 1.21464 0.94873 0.99262 0.96134 0.89908 1.21855 0.97422 1.01307 0.99557 1.21757 0.98109 0.84816 0.95907 1.23200 0.98607 1.03398 0.91071 1.23344 0.94612 1.00539 1.00265 1.84810 1.21809 1.21902 1.67718 1.73871 0.89071 1.23727 1.19962 0.89955 0.90474 0.89965 0.81284 0.89584 0.91247 0.91299 0.89243 0.96512 0.96066 0.78313 0.93599 0.92719 0.91869 0.93271 0.91319 0.89022 0.86729 0.87265 0.86481 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 36.01 0.38 -0.18 16 2 C 0.02 0.21 7.33 -82.10 -0.60 -0.39 16 3 C -0.22 -2.34 10.59 -39.38 -0.42 -2.76 16 4 C 0.02 0.18 6.68 -35.30 -0.24 -0.06 16 5 C -0.09 -0.93 1.30 -156.81 -0.20 -1.14 16 6 C 0.56 6.85 6.48 -10.98 -0.07 6.78 16 7 O -0.53 -7.90 16.40 5.55 0.09 -7.81 16 8 N -0.59 -6.85 2.41 -172.77 -0.42 -7.27 16 9 C 0.10 1.17 6.20 -3.71 -0.02 1.15 16 10 C -0.13 -1.72 4.91 -26.60 -0.13 -1.85 16 11 C -0.09 -1.30 1.96 -90.57 -0.18 -1.48 16 12 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 13 C 0.16 3.01 5.19 -4.04 -0.02 2.99 16 14 N -0.73 -17.75 5.32 -59.91 -0.32 -18.06 16 15 C -0.24 -6.49 9.99 -15.06 -0.15 -6.65 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 19 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C -0.10 -1.19 2.72 -90.50 -0.25 -1.43 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.14 -1.76 8.38 37.16 0.31 -1.44 16 26 C 0.12 1.33 5.84 -3.71 -0.02 1.30 16 27 C -0.13 -1.05 9.85 -26.73 -0.26 -1.31 16 28 C -0.15 -1.25 7.93 -26.73 -0.21 -1.47 16 29 O 0.10 1.24 10.97 17.19 0.19 1.43 16 30 N -0.36 -4.54 12.07 33.42 0.40 -4.13 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.09 0.91 4.83 -51.93 -0.25 0.66 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.94 6.35 -51.93 -0.33 0.61 16 38 H 0.09 1.45 7.15 -51.93 -0.37 1.07 16 39 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 41 H 0.38 9.68 6.84 -40.82 -0.28 9.41 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.68 5.98 -51.93 -0.31 0.37 16 44 H 0.06 0.81 6.59 -51.93 -0.34 0.47 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 48 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 0.87 8.00 -51.93 -0.42 0.46 16 51 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 403.78 15.07 6.08 6.08 Total: -1.00 -32.19 403.78 -8.50 -40.69 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.05 Total: 7.31 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.18 Total: -8.44 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.39 Total: -56.40 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.28 Total: -6.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.19 -8.50 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185001832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.861 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds