Wall clock time and date at job start Wed Apr 1 2020 04:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41376 * 126.80258 * 2 1 4 4 C 1.35452 * 103.98595 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.77791 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.54720 * 330.47616 * 5 4 3 7 7 O 1.21287 * 119.99513 * 100.56650 * 6 5 4 8 8 N 1.34774 * 120.00294 * 280.56623 * 6 5 4 9 9 C 1.46930 * 120.62877 * 355.66504 * 8 6 5 10 10 C 1.53191 * 108.88646 * 233.55498 * 9 8 6 11 11 C 1.53068 * 109.30046 * 305.57656 * 10 9 8 12 12 H 1.09002 * 109.33642 * 301.13978 * 11 10 9 13 13 C 1.52996 * 109.45580 * 181.24626 * 11 10 9 14 14 N 1.46501 * 109.47160 * 64.79247 * 13 11 10 15 15 C 1.36937 * 119.99947 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99886 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99730 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99930 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47141 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47252 * 120.00144 * 19 17 15 22 22 H 1.48504 * 109.47296 * 240.00658 * 19 17 15 23 23 C 1.53039 * 109.65747 * 61.15196 * 11 10 9 24 24 H 1.08999 * 109.52486 * 178.73464 * 23 11 10 25 25 C 1.53003 * 109.49628 * 58.65454 * 23 11 10 26 26 C 1.46929 * 120.62942 * 175.67981 * 8 6 5 27 27 C 1.53001 * 117.52123 * 116.18146 * 5 4 3 28 28 C 1.52997 * 117.49806 * 184.81103 * 5 4 3 29 29 O 1.34036 * 106.44374 * 0.24240 * 4 3 2 30 30 N 1.20922 * 111.57112 * 359.56408 * 29 4 3 31 31 H 1.08998 * 109.47673 * 89.99130 * 1 2 3 32 32 H 1.09007 * 109.47046 * 209.99690 * 1 2 3 33 33 H 1.08997 * 109.47008 * 329.98982 * 1 2 3 34 34 H 1.08001 * 128.00776 * 0.05188 * 3 2 1 35 35 H 1.08993 * 109.58260 * 353.41260 * 9 8 6 36 36 H 1.08994 * 109.58557 * 113.69574 * 9 8 6 37 37 H 1.08994 * 109.49940 * 65.39032 * 10 9 8 38 38 H 1.09004 * 109.49124 * 185.48534 * 10 9 8 39 39 H 1.09007 * 109.47246 * 184.78716 * 13 11 10 40 40 H 1.08994 * 109.46884 * 304.78896 * 13 11 10 41 41 H 0.97007 * 119.99671 * 359.97438 * 14 13 11 42 42 H 0.97005 * 119.99761 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47030 * 300.16641 * 25 23 11 44 44 H 1.09002 * 109.46857 * 60.16265 * 25 23 11 45 45 H 1.09001 * 109.47442 * 180.15700 * 25 23 11 46 46 H 1.09004 * 109.58458 * 246.15886 * 26 8 6 47 47 H 1.08996 * 109.58710 * 6.44198 * 26 8 6 48 48 H 1.08995 * 117.49755 * 214.97259 * 27 5 4 49 49 H 1.08998 * 117.49698 * 359.97438 * 27 5 4 50 50 H 1.09000 * 117.50205 * 359.97405 * 28 5 4 51 51 H 1.09004 * 117.49477 * 144.96965 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3695 -0.0014 6 6 4.8636 2.7187 -0.6716 7 8 4.7775 3.7262 -0.0018 8 7 4.9247 2.8058 -2.0151 9 6 5.1243 1.6030 -2.8350 10 6 6.3225 1.8283 -3.7625 11 6 6.1050 3.1120 -4.5673 12 1 5.1849 3.0242 -5.1451 13 6 7.2853 3.3240 -5.5174 14 7 7.3173 2.2427 -6.5053 15 6 8.2938 2.2209 -7.4651 16 1 9.0401 3.0010 -7.4940 17 6 8.3244 1.1960 -8.4008 18 7 7.4145 0.2456 -8.3658 19 14 9.6560 1.1665 -9.7105 20 1 10.5498 2.3392 -9.5342 21 1 10.4484 -0.0828 -9.5828 22 1 9.0287 1.2196 -11.0555 23 6 5.9967 4.3048 -3.6145 24 1 5.8644 5.2205 -4.1908 25 6 7.2738 4.4079 -2.7782 26 6 4.7933 4.1055 -2.6878 27 6 5.8156 1.2111 1.2158 28 6 6.1958 0.5606 -0.1158 29 8 3.4537 -0.7253 -0.0063 30 7 2.2868 -1.0424 -0.0006 31 1 -0.3634 0.0002 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 2.0709 2.1743 0.0008 35 1 5.3189 0.7479 -2.1877 36 1 4.2313 1.4146 -3.4308 37 1 7.2305 1.9239 -3.1672 38 1 6.4202 0.9821 -4.4426 39 1 7.1729 4.2801 -6.0288 40 1 8.2147 3.3236 -4.9479 41 1 6.6471 1.5418 -6.4791 42 1 7.4357 -0.4704 -9.0200 43 1 7.4063 3.4915 -2.2030 44 1 8.1297 4.5497 -3.4380 45 1 7.1951 5.2558 -2.0978 46 1 3.8742 4.1225 -3.2735 47 1 4.7669 4.9012 -1.9433 48 1 6.3885 2.0828 1.5319 49 1 5.4763 0.5555 2.0177 50 1 6.1069 -0.5232 -0.1900 51 1 7.0189 1.0043 -0.6761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185001832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:35 Heat of formation + Delta-G solvation = 44.611526 kcal Electronic energy + Delta-G solvation = -31855.660334 eV Core-core repulsion = 27758.748054 eV Total energy + Delta-G solvation = -4096.912279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.03521 -41.82547 -39.65280 -37.85317 -36.56868 -35.82209 -34.78213 -33.18591 -32.59347 -31.97257 -29.65179 -28.52855 -28.24271 -25.99582 -25.11793 -24.42040 -24.14874 -23.54581 -22.90865 -21.80184 -20.35843 -19.60207 -19.04131 -18.71287 -18.68723 -17.73539 -17.14281 -16.79642 -16.50493 -16.08113 -15.76357 -15.49300 -15.40551 -15.31515 -14.84923 -14.67800 -14.36888 -14.28686 -14.23520 -14.02877 -13.91262 -13.71592 -13.56038 -13.36995 -12.96619 -12.85124 -12.70627 -12.65506 -12.54390 -12.32985 -12.17736 -12.14845 -12.02380 -11.90779 -11.87845 -11.55280 -11.40345 -11.22257 -11.03348 -10.91082 -10.77460 -10.27064 -9.70311 -8.94682 -7.93246 -5.20478 0.28812 1.14431 1.15483 1.48237 1.48583 1.58319 1.69493 2.16320 2.56370 2.57489 3.12118 3.18315 3.27382 3.40697 3.62983 3.68040 3.73973 3.79842 3.82445 4.00005 4.04706 4.19489 4.22231 4.32012 4.38687 4.45236 4.46134 4.55737 4.62056 4.65291 4.66906 4.72906 4.75378 4.78935 4.82202 4.83680 4.85763 4.89907 4.98729 5.05441 5.09332 5.18381 5.18910 5.20264 5.26721 5.32534 5.49299 5.54126 5.62144 6.25960 6.29937 6.96796 7.17071 7.36666 8.13874 8.36974 9.30244 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.002722 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.987455 B =10282.510663 C =11198.553739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.019 3.981 3 C -0.227 4.227 4 C 0.017 3.983 5 C -0.106 4.106 6 C 0.566 3.434 7 O -0.559 6.559 8 N -0.589 5.589 9 C 0.111 3.889 10 C -0.118 4.118 11 C -0.079 4.079 12 H 0.064 0.936 13 C 0.159 3.841 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.295 1.295 23 C -0.089 4.089 24 H 0.092 0.908 25 C -0.140 4.140 26 C 0.118 3.882 27 C -0.115 4.115 28 C -0.142 4.142 29 O 0.095 5.905 30 N -0.389 5.389 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.022 0.978 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.127 0.873 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 3.650 21.325 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C -0.248 4.248 4 C -0.047 4.047 5 C -0.110 4.110 6 C 0.353 3.647 7 O -0.437 6.437 8 N -0.320 5.320 9 C -0.011 4.011 10 C -0.156 4.156 11 C -0.098 4.098 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.385 5.385 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.109 4.109 24 H 0.111 0.889 25 C -0.197 4.197 26 C -0.004 4.004 27 C -0.153 4.153 28 C -0.179 4.179 29 O 0.031 5.969 30 N -0.097 5.097 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.134 0.866 49 H 0.140 0.860 50 H 0.145 0.855 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.087 2.955 21.580 24.004 hybrid contribution 0.340 0.304 -1.252 1.332 sum -9.747 3.259 20.329 22.779 Atomic orbital electron populations 1.20344 0.83580 1.04987 1.04496 1.24117 1.00577 0.88060 1.01160 1.22504 0.90965 1.01579 1.09737 1.22871 0.95717 0.83544 1.02553 1.19254 0.88288 0.94317 1.09188 1.19064 0.75610 0.88332 0.81743 1.90690 1.51282 1.37653 1.64112 1.48023 1.69834 1.09223 1.04930 1.21857 0.98428 0.86970 0.93848 1.21829 0.98060 0.97939 0.97757 1.21189 0.98051 0.95204 0.95334 0.91728 1.20843 0.96203 0.90231 0.89431 1.42584 1.33893 1.28467 1.33601 1.19626 1.05465 1.06371 1.05795 0.90998 1.25482 1.01319 0.97731 1.02073 1.69803 1.37924 1.15032 1.39040 0.85148 0.78819 0.77335 0.78920 1.19256 1.22076 1.22195 1.21397 0.95426 0.98305 0.95750 0.88938 1.21808 0.96923 1.01563 0.99429 1.21761 0.98074 0.84785 0.95755 1.23303 0.97366 1.03516 0.91077 1.23430 0.93308 1.00935 1.00195 1.84780 1.21766 1.22215 1.68146 1.73863 0.89490 1.24699 1.21603 0.89086 0.89999 0.88072 0.80676 0.88418 0.91211 0.91071 0.91846 0.96745 0.95966 0.79243 0.94090 0.93056 0.92729 0.92284 0.90200 0.88945 0.86588 0.85974 0.85504 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.47 71.24 0.75 -0.25 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 C -0.23 -4.63 10.59 22.40 0.24 -4.40 16 4 C 0.02 0.36 6.68 25.04 0.17 0.52 16 5 C -0.11 -2.02 1.30 -53.67 -0.07 -2.09 16 6 C 0.57 12.97 6.48 87.66 0.57 13.54 16 7 O -0.56 -15.82 16.40 -3.05 -0.05 -15.87 16 8 N -0.59 -12.78 2.41 -818.90 -1.98 -14.75 16 9 C 0.11 2.46 6.20 86.36 0.54 3.00 16 10 C -0.12 -3.18 4.91 30.68 0.15 -3.03 16 11 C -0.08 -2.26 1.96 -10.76 -0.02 -2.28 16 12 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 13 C 0.16 5.97 5.19 86.38 0.45 6.42 16 14 N -0.74 -36.24 5.32 -343.45 -1.83 -38.07 16 15 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 18 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 19 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 C -0.09 -2.03 2.72 -10.72 -0.03 -2.06 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 C -0.14 -3.19 8.38 71.98 0.60 -2.59 16 26 C 0.12 2.49 5.84 86.36 0.50 2.99 16 27 C -0.12 -1.72 9.85 30.59 0.30 -1.42 16 28 C -0.14 -2.13 7.93 30.59 0.24 -1.88 16 29 O 0.09 2.18 10.97 71.67 0.79 2.97 16 30 N -0.39 -9.52 12.07 -49.57 -0.60 -10.12 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.10 1.96 4.83 -2.39 -0.01 1.95 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.88 6.35 -2.39 -0.02 1.87 16 38 H 0.06 2.08 7.15 -2.38 -0.02 2.06 16 39 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.02 0.85 6.74 -2.39 -0.02 0.83 16 41 H 0.38 19.33 6.84 -92.70 -0.63 18.70 16 42 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 43 H 0.05 1.20 5.98 -2.39 -0.01 1.18 16 44 H 0.05 1.33 6.59 -2.39 -0.02 1.32 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.09 2.02 7.00 -2.39 -0.02 2.00 16 48 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.13 1.67 8.00 -2.39 -0.02 1.66 16 51 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.36 403.78 4.97 -63.39 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.31 Total: 31.37 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 6.01 Total: -8.85 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -4.12 Total: -120.69 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.74 Total: -12.90 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -68.36 4.97 -63.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185001832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.003 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds