Wall clock time and date at job start Wed Apr 1 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.34265 * 126.52551 * 2 1 4 4 C 1.34053 * 108.22745 * 180.26332 * 3 2 1 5 5 C 1.50697 * 125.38174 * 179.76784 * 4 3 2 6 6 C 1.53000 * 117.49744 * 8.70336 * 5 4 3 7 7 C 1.53002 * 117.49485 * 300.04480 * 5 4 3 8 8 N 1.29946 * 109.23949 * 359.73014 * 4 3 2 9 9 C 1.36067 * 108.47945 * 0.02562 * 8 4 3 10 10 C 1.47412 * 126.44849 * 180.02562 * 9 8 4 11 11 O 1.21610 * 120.00143 * 174.16638 * 10 9 8 12 12 N 1.34773 * 120.00151 * 354.16283 * 10 9 8 13 13 C 1.46933 * 120.62987 * 353.89719 * 12 10 9 14 14 C 1.53193 * 108.77376 * 126.36799 * 13 12 10 15 15 C 1.53042 * 109.33814 * 54.62207 * 14 13 12 16 16 H 1.08998 * 109.46292 * 58.66833 * 15 14 13 17 17 C 1.53000 * 109.45973 * 178.62972 * 15 14 13 18 18 N 1.46506 * 109.47250 * 295.00026 * 17 15 14 19 19 C 1.36932 * 120.00221 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99705 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00404 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 90.00289 * 23 21 19 25 25 H 1.48500 * 109.47688 * 210.00175 * 23 21 19 26 26 H 1.48500 * 109.47158 * 330.00814 * 23 21 19 27 27 C 1.53040 * 109.53710 * 298.67900 * 15 14 13 28 28 H 1.09003 * 109.52195 * 181.30225 * 27 15 14 29 29 C 1.52997 * 109.47314 * 301.36779 * 27 15 14 30 30 C 1.46934 * 120.63348 * 173.87632 * 12 10 9 31 31 H 1.09005 * 109.47135 * 270.19190 * 1 2 3 32 32 H 1.09005 * 109.47350 * 30.18925 * 1 2 3 33 33 H 1.08999 * 109.47225 * 150.19267 * 1 2 3 34 34 H 1.09001 * 115.55185 * 154.37688 * 5 4 3 35 35 H 1.09007 * 117.49901 * 359.97438 * 6 5 4 36 36 H 1.08996 * 117.50165 * 145.02448 * 6 5 4 37 37 H 1.08997 * 117.49649 * 214.97742 * 7 5 4 38 38 H 1.08999 * 117.49939 * 359.97371 * 7 5 4 39 39 H 1.08994 * 109.58259 * 6.58105 * 13 12 10 40 40 H 1.09005 * 109.70365 * 246.22648 * 13 12 10 41 41 H 1.09004 * 109.49584 * 174.58537 * 14 13 12 42 42 H 1.08994 * 109.49792 * 294.65399 * 14 13 12 43 43 H 1.08999 * 109.47138 * 54.99343 * 17 15 14 44 44 H 1.08996 * 109.47279 * 174.99893 * 17 15 14 45 45 H 0.97000 * 119.99271 * 359.97438 * 18 17 15 46 46 H 0.96992 * 120.00722 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47029 * 179.85792 * 29 27 15 48 48 H 1.09000 * 109.47077 * 299.85568 * 29 27 15 49 49 H 1.08994 * 109.47377 * 59.85259 * 29 27 15 50 50 H 1.08994 * 109.58130 * 353.41883 * 30 12 10 51 51 H 1.08997 * 109.58790 * 113.70185 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0059 5 6 4.7929 1.5507 -0.0129 6 6 4.5685 3.0502 0.1919 7 6 4.9537 2.5152 -1.1896 8 7 3.6001 -0.6412 -0.0037 9 6 2.3169 -1.0936 0.0031 10 6 1.8853 -2.5031 0.0081 11 8 0.7059 -2.7775 0.1212 12 7 2.7976 -3.4878 -0.1126 13 6 4.2071 -3.1732 -0.3833 14 6 5.0769 -3.8543 0.6780 15 6 4.7614 -5.3516 0.7072 16 1 4.9491 -5.7815 -0.2767 17 6 5.6530 -6.0402 1.7425 18 7 7.0529 -5.9471 1.3207 19 6 8.0394 -6.4968 2.0952 20 1 7.7854 -6.9986 3.0171 21 6 9.3657 -6.4089 1.6952 22 7 10.3140 -6.9368 2.4398 23 14 9.8048 -5.5415 0.1001 24 1 10.0502 -4.1021 0.3708 25 1 11.0298 -6.1529 -0.4749 26 1 8.6834 -5.6797 -0.8635 27 6 3.2918 -5.5578 1.0811 28 1 3.0733 -6.6248 1.1245 29 6 3.0195 -4.9249 2.4472 30 6 2.4018 -4.8961 0.0244 31 1 -0.3634 0.0034 1.0277 32 1 -0.3634 0.8883 -0.5168 33 1 -0.3633 -0.8917 -0.5108 34 1 5.6990 1.1152 0.4084 35 1 3.5426 3.3912 0.3313 36 1 5.3271 3.6014 0.7476 37 1 5.9657 2.7147 -1.5422 38 1 4.1816 2.5039 -1.9588 39 1 4.3555 -2.0943 -0.3400 40 1 4.4823 -3.5405 -1.3720 41 1 6.1293 -3.7089 0.4340 42 1 4.8664 -3.4191 1.6549 43 1 5.5316 -5.5513 2.7091 44 1 5.3681 -7.0888 1.8273 45 1 7.2808 -5.4966 0.4924 46 1 11.2407 -6.8758 2.1602 47 1 1.9721 -5.0696 2.7123 48 1 3.6530 -5.3960 3.1987 49 1 3.2393 -3.8582 2.4037 50 1 1.3591 -4.9538 0.3367 51 1 2.5257 -5.4051 -0.9314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185390914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:34 Heat of formation + Delta-G solvation = 35.558981 kcal Electronic energy + Delta-G solvation = -31637.809944 eV Core-core repulsion = 27540.505117 eV Total energy + Delta-G solvation = -4097.304827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.82368 -40.30330 -38.16643 -37.64605 -35.45787 -34.92398 -33.24617 -32.59159 -31.72146 -30.59815 -28.31039 -27.21963 -26.72647 -24.61514 -23.45790 -23.12451 -22.93579 -22.73840 -21.72236 -21.01535 -19.65082 -18.51294 -17.80104 -17.33966 -17.28048 -16.82907 -15.95630 -15.78709 -15.37126 -14.94552 -14.90717 -14.39350 -14.14556 -14.06477 -13.77634 -13.65036 -13.48906 -13.42405 -13.11838 -12.90720 -12.69379 -12.60676 -12.37145 -12.26488 -12.09692 -11.87859 -11.57687 -11.48291 -11.34698 -11.14807 -11.10884 -10.98089 -10.78706 -10.73825 -10.35688 -10.27351 -10.08563 -10.06438 -9.54645 -9.46232 -9.04299 -8.83962 -8.52468 -7.16975 -5.73165 -3.07641 0.78889 1.61977 2.06255 2.85800 3.06872 3.28427 3.39175 3.41895 3.44391 3.46792 4.17044 4.27329 4.32335 4.39141 4.61355 4.62225 4.82285 4.87209 4.92906 5.01268 5.08954 5.12083 5.12619 5.26075 5.27892 5.35495 5.43636 5.47926 5.54634 5.55501 5.56032 5.62548 5.66435 5.70499 5.75811 5.80030 5.83670 5.91370 6.06194 6.20179 6.21436 6.36680 6.38368 6.47590 6.57979 6.69365 6.80545 6.92314 7.15314 7.41490 8.03013 8.04286 8.46336 9.26055 9.98607 10.19297 11.45644 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.003270 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.292769 B = 8561.192242 C =10732.193196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.037 3.963 3 O -0.195 6.195 4 C 0.228 3.772 5 C -0.075 4.075 6 C -0.162 4.162 7 C -0.156 4.156 8 N -0.445 5.445 9 C -0.067 4.067 10 C 0.602 3.398 11 O -0.544 6.544 12 N -0.584 5.584 13 C 0.061 3.939 14 C -0.121 4.121 15 C -0.095 4.095 16 H 0.069 0.931 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.937 5.937 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.096 4.096 28 H 0.083 0.917 29 C -0.146 4.146 30 C 0.117 3.883 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.149 0.851 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.091 0.909 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.552 20.168 -7.808 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.019 4.019 3 O -0.082 6.082 4 C 0.021 3.979 5 C -0.094 4.094 6 C -0.199 4.199 7 C -0.194 4.194 8 N -0.174 5.174 9 C -0.186 4.186 10 C 0.389 3.611 11 O -0.423 6.423 12 N -0.314 5.314 13 C -0.061 4.061 14 C -0.159 4.159 15 C -0.114 4.114 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.401 5.401 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.585 5.585 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.116 4.116 28 H 0.102 0.898 29 C -0.203 4.203 30 C -0.006 4.006 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.169 0.831 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.165 0.835 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.109 0.891 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.520 19.520 -7.558 28.621 hybrid contribution 0.205 0.721 -1.079 1.314 sum -19.315 20.241 -8.637 29.281 Atomic orbital electron populations 1.20560 0.82438 1.05160 1.04748 1.23681 0.95029 0.83129 1.00031 1.84279 1.17791 1.36283 1.69886 1.25202 0.83054 0.89797 0.99818 1.20360 0.92325 0.89609 1.07140 1.23136 1.04080 0.93026 0.99679 1.23162 1.04235 1.00447 0.91598 1.70326 1.20852 1.07878 1.18389 1.21505 0.88559 0.95617 1.12949 1.16718 0.85115 0.82496 0.76764 1.90752 1.16366 1.83032 1.52136 1.47846 1.09300 1.05845 1.68434 1.23022 0.78461 1.06704 0.97939 1.21883 0.99749 0.94872 0.99391 1.21398 0.93798 0.95985 1.00234 0.91265 1.20690 0.83876 0.96873 0.94947 1.42740 1.02048 1.69382 1.25924 1.19074 0.85935 1.28686 1.03299 0.89323 1.24664 0.95576 1.00836 0.98245 1.69701 0.99705 1.50319 1.38777 0.86554 0.77594 0.79768 0.84706 1.21049 1.21798 1.20338 1.21445 0.94971 1.00029 0.95144 0.89839 1.21870 1.00805 1.01195 0.96429 1.21745 0.99951 0.79879 0.98981 0.88910 0.90231 0.87103 0.83106 0.87857 0.86998 0.86879 0.88171 0.83501 0.92368 0.90505 0.91251 0.95297 0.95761 0.80715 0.93136 0.93303 0.91783 0.92612 0.89109 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 9.82 36.00 0.35 -0.22 16 2 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 3 O -0.19 -2.04 10.40 6.48 0.07 -1.97 16 4 C 0.23 2.44 7.80 -13.08 -0.10 2.34 16 5 C -0.08 -0.57 6.33 -91.77 -0.58 -1.15 16 6 C -0.16 -0.87 10.16 -26.69 -0.27 -1.14 16 7 C -0.16 -0.87 10.24 -26.69 -0.27 -1.14 16 8 N -0.45 -5.68 7.73 -7.65 -0.06 -5.74 16 9 C -0.07 -0.88 6.73 -83.02 -0.56 -1.44 16 10 C 0.60 8.60 7.68 -12.53 -0.10 8.50 16 11 O -0.54 -8.34 14.33 5.27 0.08 -8.26 16 12 N -0.58 -8.01 2.41 -174.03 -0.42 -8.43 16 13 C 0.06 0.84 6.33 -3.71 -0.02 0.82 16 14 C -0.12 -1.87 4.90 -26.61 -0.13 -2.00 16 15 C -0.10 -1.50 1.96 -90.58 -0.18 -1.67 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 3.21 5.18 -4.04 -0.02 3.19 16 18 N -0.76 -18.20 5.12 -59.91 -0.31 -18.51 16 19 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 22 N -0.94 -29.82 13.97 55.49 0.78 -29.05 16 23 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 27 C -0.10 -1.28 2.72 -90.50 -0.25 -1.53 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 C -0.15 -1.98 8.38 37.16 0.31 -1.67 16 30 C 0.12 1.48 5.81 -3.71 -0.02 1.46 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.99 6.62 -51.93 -0.34 0.65 16 34 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.57 7.94 -51.92 -0.41 0.16 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.15 2.05 3.66 -77.34 -0.28 1.76 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 42 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 43 H 0.03 0.59 6.74 -51.93 -0.35 0.24 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.36 8.44 4.71 -40.82 -0.19 8.25 16 46 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.90 6.59 -51.93 -0.34 0.56 16 49 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 50 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.16 396.71 -8.92 -43.08 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.96 Total: 7.93 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.35 Total: -2.61 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.01 Total: -61.73 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.14 Total: -10.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.16 -8.92 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185390914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds