Wall clock time and date at job start Wed Apr 1 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.34265 * 126.52551 * 2 1 4 4 C 1.34053 * 108.22745 * 180.26332 * 3 2 1 5 5 C 1.50697 * 125.38174 * 179.76784 * 4 3 2 6 6 C 1.53000 * 117.49744 * 8.70336 * 5 4 3 7 7 C 1.53002 * 117.49485 * 300.04480 * 5 4 3 8 8 N 1.29946 * 109.23949 * 359.73014 * 4 3 2 9 9 C 1.36067 * 108.47945 * 0.02562 * 8 4 3 10 10 C 1.47412 * 126.44849 * 180.02562 * 9 8 4 11 11 O 1.21610 * 120.00143 * 174.16638 * 10 9 8 12 12 N 1.34773 * 120.00151 * 354.16283 * 10 9 8 13 13 C 1.46933 * 120.62987 * 353.89719 * 12 10 9 14 14 C 1.53193 * 108.77376 * 126.36799 * 13 12 10 15 15 C 1.53042 * 109.33814 * 54.62207 * 14 13 12 16 16 H 1.08998 * 109.46292 * 58.66833 * 15 14 13 17 17 C 1.53000 * 109.45973 * 178.62972 * 15 14 13 18 18 N 1.46506 * 109.47250 * 295.00026 * 17 15 14 19 19 C 1.36932 * 120.00221 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99705 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00404 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 90.00289 * 23 21 19 25 25 H 1.48500 * 109.47688 * 210.00175 * 23 21 19 26 26 H 1.48500 * 109.47158 * 330.00814 * 23 21 19 27 27 C 1.53040 * 109.53710 * 298.67900 * 15 14 13 28 28 H 1.09003 * 109.52195 * 181.30225 * 27 15 14 29 29 C 1.52997 * 109.47314 * 301.36779 * 27 15 14 30 30 C 1.46934 * 120.63348 * 173.87632 * 12 10 9 31 31 H 1.09005 * 109.47135 * 270.19190 * 1 2 3 32 32 H 1.09005 * 109.47350 * 30.18925 * 1 2 3 33 33 H 1.08999 * 109.47225 * 150.19267 * 1 2 3 34 34 H 1.09001 * 115.55185 * 154.37688 * 5 4 3 35 35 H 1.09007 * 117.49901 * 359.97438 * 6 5 4 36 36 H 1.08996 * 117.50165 * 145.02448 * 6 5 4 37 37 H 1.08997 * 117.49649 * 214.97742 * 7 5 4 38 38 H 1.08999 * 117.49939 * 359.97371 * 7 5 4 39 39 H 1.08994 * 109.58259 * 6.58105 * 13 12 10 40 40 H 1.09005 * 109.70365 * 246.22648 * 13 12 10 41 41 H 1.09004 * 109.49584 * 174.58537 * 14 13 12 42 42 H 1.08994 * 109.49792 * 294.65399 * 14 13 12 43 43 H 1.08999 * 109.47138 * 54.99343 * 17 15 14 44 44 H 1.08996 * 109.47279 * 174.99893 * 17 15 14 45 45 H 0.97000 * 119.99271 * 359.97438 * 18 17 15 46 46 H 0.96992 * 120.00722 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47029 * 179.85792 * 29 27 15 48 48 H 1.09000 * 109.47077 * 299.85568 * 29 27 15 49 49 H 1.08994 * 109.47377 * 59.85259 * 29 27 15 50 50 H 1.08994 * 109.58130 * 353.41883 * 30 12 10 51 51 H 1.08997 * 109.58790 * 113.70185 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0059 5 6 4.7929 1.5507 -0.0129 6 6 4.5685 3.0502 0.1919 7 6 4.9537 2.5152 -1.1896 8 7 3.6001 -0.6412 -0.0037 9 6 2.3169 -1.0936 0.0031 10 6 1.8853 -2.5031 0.0081 11 8 0.7059 -2.7775 0.1212 12 7 2.7976 -3.4878 -0.1126 13 6 4.2071 -3.1732 -0.3833 14 6 5.0769 -3.8543 0.6780 15 6 4.7614 -5.3516 0.7072 16 1 4.9491 -5.7815 -0.2767 17 6 5.6530 -6.0402 1.7425 18 7 7.0529 -5.9471 1.3207 19 6 8.0394 -6.4968 2.0952 20 1 7.7854 -6.9986 3.0171 21 6 9.3657 -6.4089 1.6952 22 7 10.3140 -6.9368 2.4398 23 14 9.8048 -5.5415 0.1001 24 1 10.0502 -4.1021 0.3708 25 1 11.0298 -6.1529 -0.4749 26 1 8.6834 -5.6797 -0.8635 27 6 3.2918 -5.5578 1.0811 28 1 3.0733 -6.6248 1.1245 29 6 3.0195 -4.9249 2.4472 30 6 2.4018 -4.8961 0.0244 31 1 -0.3634 0.0034 1.0277 32 1 -0.3634 0.8883 -0.5168 33 1 -0.3633 -0.8917 -0.5108 34 1 5.6990 1.1152 0.4084 35 1 3.5426 3.3912 0.3313 36 1 5.3271 3.6014 0.7476 37 1 5.9657 2.7147 -1.5422 38 1 4.1816 2.5039 -1.9588 39 1 4.3555 -2.0943 -0.3400 40 1 4.4823 -3.5405 -1.3720 41 1 6.1293 -3.7089 0.4340 42 1 4.8664 -3.4191 1.6549 43 1 5.5316 -5.5513 2.7091 44 1 5.3681 -7.0888 1.8273 45 1 7.2808 -5.4966 0.4924 46 1 11.2407 -6.8758 2.1602 47 1 1.9721 -5.0696 2.7123 48 1 3.6530 -5.3960 3.1987 49 1 3.2393 -3.8582 2.4037 50 1 1.3591 -4.9538 0.3367 51 1 2.5257 -5.4051 -0.9314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185390914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:33 Heat of formation + Delta-G solvation = 14.155932 kcal Electronic energy + Delta-G solvation = -31638.738050 eV Core-core repulsion = 27540.505117 eV Total energy + Delta-G solvation = -4098.232933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.64898 -41.40663 -39.34490 -38.16494 -36.76660 -36.18566 -34.70488 -33.42385 -33.28584 -32.22718 -29.21243 -28.69447 -27.72515 -25.74923 -24.82691 -24.19826 -23.86799 -23.33669 -22.86708 -22.28296 -20.65524 -19.97611 -19.27176 -18.54239 -18.14134 -17.58872 -16.98895 -16.76532 -16.55473 -16.31072 -15.99076 -15.68763 -15.49683 -15.23089 -14.92414 -14.85290 -14.64335 -14.55902 -14.23783 -14.04851 -13.82709 -13.67627 -13.49847 -13.27699 -13.19674 -12.90963 -12.73435 -12.66409 -12.59145 -12.46220 -12.21825 -12.06376 -11.86614 -11.81373 -11.76693 -11.57518 -11.55445 -11.37469 -11.31396 -10.96515 -10.53503 -9.90241 -9.55995 -9.27983 -8.02603 -5.35806 -0.06074 0.76162 1.29827 1.37423 1.41404 1.48752 1.87360 2.09745 2.48772 2.58421 2.86683 3.28673 3.37228 3.50981 3.54182 3.73022 3.75338 3.80830 3.93038 4.03137 4.06157 4.11930 4.12739 4.26644 4.32742 4.43481 4.44639 4.54223 4.60665 4.64992 4.71464 4.73628 4.74518 4.80988 4.81981 4.93618 4.95610 4.99507 5.01085 5.07812 5.14161 5.16092 5.18271 5.19947 5.24175 5.39734 5.51598 5.71663 5.75611 6.20814 6.21831 6.43695 6.98123 7.08234 7.84522 8.04894 9.19319 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.003270 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.292769 B = 8561.192242 C =10732.193196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 O -0.192 6.192 4 C 0.232 3.768 5 C -0.100 4.100 6 C -0.148 4.148 7 C -0.146 4.146 8 N -0.471 5.471 9 C -0.099 4.099 10 C 0.599 3.401 11 O -0.560 6.560 12 N -0.586 5.586 13 C 0.068 3.932 14 C -0.114 4.114 15 C -0.084 4.084 16 H 0.074 0.926 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.235 4.235 20 H 0.053 0.947 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.955 3.045 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.251 1.251 27 C -0.089 4.089 28 H 0.098 0.902 29 C -0.140 4.140 30 C 0.119 3.881 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.042 0.958 50 H 0.092 0.908 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 22.302 -9.827 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 O -0.080 6.080 4 C 0.025 3.975 5 C -0.118 4.118 6 C -0.185 4.185 7 C -0.183 4.183 8 N -0.200 5.200 9 C -0.218 4.218 10 C 0.387 3.613 11 O -0.440 6.440 12 N -0.316 5.316 13 C -0.054 4.054 14 C -0.153 4.153 15 C -0.103 4.103 16 H 0.093 0.907 17 C 0.037 3.963 18 N -0.401 5.401 19 C -0.366 4.366 20 H 0.071 0.929 21 C -0.256 4.256 22 N -0.637 5.637 23 Si 0.782 3.218 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.176 1.176 27 C -0.109 4.109 28 H 0.116 0.884 29 C -0.198 4.198 30 C -0.003 4.003 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.171 0.829 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.200 0.800 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.111 0.889 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.829 21.657 -9.585 31.539 hybrid contribution 0.545 0.078 -0.334 0.644 sum -20.284 21.734 -9.918 31.340 Atomic orbital electron populations 1.20673 0.80429 1.05968 1.05600 1.24186 0.96116 0.82699 0.98158 1.84308 1.17808 1.35988 1.69854 1.25817 0.83758 0.89711 0.98242 1.20576 0.91262 0.90438 1.09574 1.23243 1.04639 0.91073 0.99585 1.23263 1.05147 0.98621 0.91319 1.70204 1.20921 1.09012 1.19864 1.21494 0.89348 0.95585 1.15336 1.16903 0.84970 0.83089 0.76331 1.90730 1.16858 1.83454 1.52978 1.47884 1.09133 1.06202 1.68394 1.22947 0.78220 1.06802 0.97468 1.21783 0.99315 0.94722 0.99448 1.21293 0.94409 0.95651 0.98987 0.90716 1.20817 0.82417 0.97130 0.95977 1.42717 1.02896 1.68930 1.25597 1.19037 0.87279 1.27757 1.02492 0.92905 1.25527 0.95368 1.02262 1.02457 1.69890 1.00102 1.52439 1.41225 0.85404 0.77702 0.78506 0.80208 1.20041 1.22153 1.17567 1.21409 0.93320 1.01036 0.95128 0.88378 1.21805 1.01330 1.00177 0.96452 1.21775 0.99677 0.79481 0.99352 0.87874 0.87518 0.88091 0.82936 0.87959 0.85198 0.85222 0.88396 0.83314 0.91567 0.91829 0.92425 0.96049 0.95976 0.80030 0.93309 0.92088 0.92785 0.93940 0.88949 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.82 71.23 0.70 -0.30 16 2 C 0.05 0.94 7.44 25.18 0.19 1.13 16 3 O -0.19 -3.76 10.40 0.28 0.00 -3.76 16 4 C 0.23 4.73 7.80 88.39 0.69 5.42 16 5 C -0.10 -1.35 6.33 -11.54 -0.07 -1.43 16 6 C -0.15 -1.24 10.16 30.62 0.31 -0.93 16 7 C -0.15 -1.29 10.24 30.62 0.31 -0.97 16 8 N -0.47 -11.77 7.73 -293.03 -2.26 -14.04 16 9 C -0.10 -2.55 6.73 40.41 0.27 -2.27 16 10 C 0.60 16.68 7.68 86.66 0.67 17.35 16 11 O -0.56 -16.72 14.33 -4.06 -0.06 -16.78 16 12 N -0.59 -15.41 2.41 -822.77 -1.98 -17.40 16 13 C 0.07 1.80 6.33 86.36 0.55 2.34 16 14 C -0.11 -3.44 4.90 30.67 0.15 -3.29 16 15 C -0.08 -2.55 1.96 -10.77 -0.02 -2.57 16 16 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 17 C 0.16 6.36 5.18 86.38 0.45 6.80 16 18 N -0.76 -36.12 5.12 -343.46 -1.76 -37.88 16 19 C -0.23 -13.76 10.47 84.03 0.88 -12.88 16 20 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 21 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.99 -64.25 13.97 21.65 0.30 -63.95 16 23 Si 0.96 45.79 27.74 68.60 1.90 47.70 16 24 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 27 C -0.09 -2.25 2.72 -10.72 -0.03 -2.28 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 C -0.14 -3.73 8.38 71.98 0.60 -3.12 16 30 C 0.12 2.81 5.81 86.36 0.50 3.31 16 31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.10 1.70 6.62 -2.39 -0.02 1.68 16 34 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 0.90 7.94 -2.38 -0.02 0.88 16 36 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.15 4.05 3.66 -52.56 -0.19 3.85 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 2.08 7.15 -2.38 -0.02 2.06 16 42 H 0.06 1.86 6.33 -2.39 -0.02 1.85 16 43 H 0.02 0.88 6.74 -2.39 -0.02 0.87 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.37 16.58 4.71 -92.71 -0.44 16.14 16 46 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.05 1.52 6.59 -2.39 -0.02 1.50 16 49 H 0.04 1.24 5.97 -2.39 -0.01 1.22 16 50 H 0.09 2.21 7.04 -2.39 -0.02 2.19 16 51 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.79 396.71 3.03 -71.76 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.28 Total: 31.46 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.61 Total: 2.87 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -5.71 Total: -133.25 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.70 kcal Total: -74.79 3.03 -71.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185390914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.919 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds