Wall clock time and date at job start Wed Apr 1 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34334 * 126.43831 * 2 1 4 4 N 1.34485 * 107.66149 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70349 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47127 * 90.02396 * 6 5 4 8 8 C 1.53005 * 109.47224 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47196 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99897 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00414 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00197 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.88299 * 25.33577 * 12 11 9 14 14 C 1.53948 * 113.66249 * 253.98786 * 12 11 9 15 15 C 1.54140 * 87.22722 * 220.82996 * 14 12 11 16 16 H 1.09005 * 113.71975 * 139.15489 * 15 14 12 17 17 N 1.46503 * 113.66342 * 270.17063 * 15 14 12 18 18 C 1.36935 * 120.00407 * 252.22531 * 17 15 14 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00469 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99773 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00440 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46904 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47106 * 119.99771 * 22 20 18 25 25 H 1.48497 * 109.47142 * 240.00244 * 22 20 18 26 26 C 1.52904 * 86.81538 * 24.65948 * 15 14 12 27 27 C 1.52905 * 121.13756 * 100.89782 * 26 15 14 28 28 C 1.53952 * 86.78404 * 100.82035 * 27 26 15 29 29 C 1.52907 * 121.13743 * 209.45977 * 26 15 14 30 30 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.47142 * 90.01986 * 1 2 3 32 32 H 1.08997 * 109.47312 * 210.02061 * 1 2 3 33 33 H 1.09000 * 109.47478 * 330.02834 * 1 2 3 34 34 H 1.07995 * 126.16873 * 0.24016 * 3 2 1 35 35 H 1.09004 * 109.47057 * 210.02501 * 6 5 4 36 36 H 1.09001 * 109.47192 * 330.02360 * 6 5 4 37 37 H 1.08995 * 109.47454 * 300.00120 * 7 6 5 38 38 H 1.09008 * 109.47041 * 60.00321 * 7 6 5 39 39 H 1.08995 * 109.47255 * 300.00550 * 8 7 6 40 40 H 1.08996 * 109.46984 * 60.00569 * 8 7 6 41 41 H 0.96998 * 119.99497 * 0.02562 * 11 9 8 42 42 H 1.09001 * 113.58356 * 335.40277 * 14 12 11 43 43 H 1.09005 * 113.57843 * 106.19556 * 14 12 11 44 44 H 0.97002 * 119.99792 * 72.22204 * 17 15 14 45 45 H 0.96993 * 120.00158 * 179.97438 * 21 20 18 46 46 H 1.08999 * 113.66199 * 215.29216 * 27 26 15 47 47 H 1.09003 * 113.66186 * 346.35277 * 27 26 15 48 48 H 1.09002 * 113.58211 * 270.13598 * 28 27 26 49 49 H 1.09002 * 113.58407 * 139.33754 * 28 27 26 50 50 H 1.09005 * 113.66552 * 13.65232 * 29 26 15 51 51 H 1.09006 * 113.66516 * 144.70424 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0004 6 6 4.8004 -1.5339 0.0003 7 6 5.2142 -1.8322 1.4427 8 6 6.4565 -2.7254 1.4427 9 6 6.8636 -3.0196 2.8635 10 8 6.2230 -2.5606 3.7854 11 7 7.9391 -3.7938 3.1098 12 6 8.3345 -4.0803 4.4910 13 1 7.5031 -4.0125 5.1926 14 6 9.5906 -3.3150 4.9454 15 6 10.0351 -4.6124 5.6490 16 1 11.0995 -4.8243 5.5465 17 7 9.5627 -4.7232 7.0314 18 6 10.4437 -4.5788 8.0697 19 1 11.4867 -4.3827 7.8696 20 6 9.9960 -4.6832 9.3795 21 7 8.7248 -4.9216 9.6234 22 14 11.1976 -4.4854 10.7959 23 1 12.5574 -4.2251 10.2588 24 1 10.7756 -3.3443 11.6474 25 1 11.2151 -5.7289 11.6075 26 6 9.1610 -5.3581 4.6401 27 6 9.7740 -6.0499 3.4221 28 6 9.6354 -7.3662 4.2084 29 6 8.5004 -6.6897 4.9984 30 8 2.3074 -1.0840 -0.0009 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3634 -0.8898 0.5141 33 1 -0.3634 0.8902 0.5134 34 1 1.9821 2.1113 0.0037 35 1 4.5764 -2.4685 -0.5141 36 1 5.6149 -1.0228 -0.5130 37 1 5.4381 -0.8977 1.9571 38 1 4.3996 -2.3434 1.9561 39 1 6.2321 -3.6598 0.9284 40 1 7.2711 -2.2146 0.9293 41 1 8.4512 -4.1612 2.3725 42 1 10.2425 -3.0195 4.1233 43 1 9.3775 -2.4961 5.6326 44 1 8.6258 -4.8989 7.2111 45 1 8.4120 -4.9950 10.5386 46 1 9.1472 -6.0043 2.5315 47 1 10.8076 -5.7622 3.2296 48 1 10.5079 -7.6048 4.8167 49 1 9.3018 -8.2056 3.5983 50 1 8.5164 -6.9131 6.0652 51 1 7.5155 -6.8239 4.5509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203023559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:06 Heat of formation + Delta-G solvation = 26.272826 kcal Electronic energy + Delta-G solvation = -29774.455449 eV Core-core repulsion = 25676.747945 eV Total energy + Delta-G solvation = -4097.707505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59332 -40.57505 -39.02070 -35.56182 -35.02166 -34.81637 -34.03056 -32.70495 -32.29122 -29.92941 -29.15936 -26.21957 -25.52769 -24.54628 -24.17048 -23.25589 -22.50130 -21.95845 -21.07538 -20.35300 -20.14289 -17.90450 -17.40794 -17.08924 -16.98562 -16.68303 -16.06994 -15.87714 -15.14323 -14.97350 -14.86634 -14.62963 -14.20980 -13.94002 -13.80278 -13.67402 -13.41206 -13.09658 -12.78395 -12.70145 -12.64959 -12.49523 -12.24182 -12.12221 -11.89374 -11.81336 -11.58341 -11.50944 -11.37636 -11.04249 -10.90241 -10.83886 -10.77787 -10.72562 -10.13873 -10.05219 -9.81811 -9.79312 -9.54428 -9.42089 -8.93267 -8.86615 -8.57629 -6.99620 -5.79131 -3.08843 1.14208 2.33946 2.41113 2.78819 3.33769 3.42750 3.48302 3.50758 3.76514 4.40628 4.51145 4.57367 4.60950 4.66380 4.77202 4.77906 4.88699 4.91402 4.96633 4.98450 5.08243 5.15184 5.19548 5.22690 5.26636 5.33385 5.38098 5.46230 5.60292 5.66524 5.72593 5.80472 5.84337 5.93284 5.95648 6.00549 6.01829 6.06006 6.07895 6.11939 6.25271 6.44630 6.57629 6.67834 6.72545 6.79884 6.88718 7.10262 7.47185 7.69318 7.72572 8.38906 8.42135 9.50120 10.06391 10.40812 11.42933 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.001864 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.848032 B =15019.361471 C =16128.821161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.053 4.053 3 C -0.043 4.043 4 N -0.481 5.481 5 C 0.195 3.805 6 C -0.023 4.023 7 C -0.102 4.102 8 C -0.139 4.139 9 C 0.507 3.493 10 O -0.538 6.538 11 N -0.716 5.716 12 C 0.139 3.861 13 H 0.112 0.888 14 C -0.182 4.182 15 C 0.196 3.804 16 H 0.068 0.932 17 N -0.700 5.700 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.134 4.134 29 C -0.126 4.126 30 O -0.201 6.201 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.182 0.818 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.395 0.605 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 3.592 -25.612 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.182 4.182 4 N -0.209 5.209 5 C -0.012 4.012 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.180 4.180 9 C 0.292 3.708 10 O -0.415 6.415 11 N -0.367 5.367 12 C 0.035 3.965 13 H 0.130 0.870 14 C -0.224 4.224 15 C 0.083 3.917 16 H 0.086 0.914 17 N -0.338 5.338 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.126 4.126 27 C -0.153 4.153 28 C -0.171 4.171 29 C -0.163 4.163 30 O -0.088 6.088 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.200 0.800 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.101 0.899 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.886 4.261 -24.765 27.003 hybrid contribution -0.189 -0.316 0.490 0.613 sum -10.075 3.945 -24.275 26.577 Atomic orbital electron populations 1.20270 0.83998 1.04515 1.03689 1.23484 0.95108 0.84634 1.07396 1.23090 0.87843 1.00372 1.06872 1.70444 1.23086 1.09243 1.18147 1.26241 0.84293 0.90357 1.00296 1.20169 0.89074 0.97317 0.99528 1.21326 0.97455 1.01227 0.94043 1.21639 0.99472 1.01796 0.95057 1.20594 0.80394 0.78535 0.91230 1.90748 1.53290 1.50996 1.46430 1.46090 1.29801 1.51468 1.09328 1.22387 0.96553 0.95610 0.81971 0.87022 1.24317 0.96889 1.00931 1.00304 1.20677 0.95433 0.91117 0.84473 0.91413 1.42116 1.09305 1.84055 0.98318 1.19297 0.91187 1.41478 0.85495 0.90925 1.24770 0.96156 1.02412 0.97376 1.69675 1.13158 1.55508 1.19278 0.86107 0.80074 0.77244 0.82673 1.20506 1.21845 1.21862 1.23595 0.98314 0.92761 0.97939 1.22524 1.00312 0.96627 0.95824 1.22740 0.99817 0.95822 0.98714 1.22632 0.96719 0.95147 1.01840 1.84389 1.17924 1.36619 1.69887 0.89871 0.90258 0.88946 0.80044 0.88788 0.87445 0.90069 0.90565 0.88764 0.88601 0.77028 0.91286 0.90994 0.77864 0.93437 0.90744 0.91435 0.90055 0.92308 0.89908 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.01 0.38 0.04 16 2 C -0.05 -0.49 7.39 -35.68 -0.26 -0.75 16 3 C -0.04 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.48 -5.89 11.29 -11.10 -0.13 -6.01 16 5 C 0.19 2.12 7.60 -12.95 -0.10 2.02 16 6 C -0.02 -0.17 5.84 -27.89 -0.16 -0.34 16 7 C -0.10 -0.99 4.49 -26.73 -0.12 -1.11 16 8 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 9 C 0.51 6.89 7.83 -10.99 -0.09 6.80 16 10 O -0.54 -10.12 15.60 5.55 0.09 -10.04 16 11 N -0.72 -9.08 5.27 -53.37 -0.28 -9.36 16 12 C 0.14 2.29 4.01 -67.48 -0.27 2.02 16 13 H 0.11 2.27 7.50 -51.93 -0.39 1.88 16 14 C -0.18 -3.22 7.70 -25.65 -0.20 -3.42 16 15 C 0.20 3.79 4.36 -67.38 -0.29 3.50 16 16 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 17 N -0.70 -17.18 4.85 -52.89 -0.26 -17.44 16 18 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C -0.12 -1.92 0.92 -154.71 -0.14 -2.06 16 27 C -0.11 -1.38 7.15 -26.28 -0.19 -1.56 16 28 C -0.13 -1.77 8.08 -25.75 -0.21 -1.97 16 29 C -0.13 -1.99 7.62 -26.28 -0.20 -2.19 16 30 O -0.20 -2.21 10.78 5.37 0.06 -2.16 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 0.86 8.10 -51.92 -0.42 0.44 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.40 3.72 6.98 -40.82 -0.28 3.43 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.39 10.24 7.61 -40.82 -0.31 9.93 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.73 6.99 -51.93 -0.36 0.36 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 419.13 15.07 6.32 6.32 Total: -1.00 -35.20 419.13 -9.44 -44.64 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -8.47 Total: 12.20 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.47 Total: -8.20 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.06 Total: -60.08 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.14 Total: -12.19 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.20 -9.44 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203023559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.914 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds