Wall clock time and date at job start Wed Apr 1 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34334 * 126.43831 * 2 1 4 4 N 1.34485 * 107.66149 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70349 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47127 * 90.02396 * 6 5 4 8 8 C 1.53005 * 109.47224 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47196 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99897 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00414 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00197 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.88299 * 25.33577 * 12 11 9 14 14 C 1.53948 * 113.66249 * 253.98786 * 12 11 9 15 15 C 1.54140 * 87.22722 * 220.82996 * 14 12 11 16 16 H 1.09005 * 113.71975 * 139.15489 * 15 14 12 17 17 N 1.46503 * 113.66342 * 270.17063 * 15 14 12 18 18 C 1.36935 * 120.00407 * 252.22531 * 17 15 14 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00469 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99773 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00440 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46904 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47106 * 119.99771 * 22 20 18 25 25 H 1.48497 * 109.47142 * 240.00244 * 22 20 18 26 26 C 1.52904 * 86.81538 * 24.65948 * 15 14 12 27 27 C 1.52905 * 121.13756 * 100.89782 * 26 15 14 28 28 C 1.53952 * 86.78404 * 100.82035 * 27 26 15 29 29 C 1.52907 * 121.13743 * 209.45977 * 26 15 14 30 30 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.47142 * 90.01986 * 1 2 3 32 32 H 1.08997 * 109.47312 * 210.02061 * 1 2 3 33 33 H 1.09000 * 109.47478 * 330.02834 * 1 2 3 34 34 H 1.07995 * 126.16873 * 0.24016 * 3 2 1 35 35 H 1.09004 * 109.47057 * 210.02501 * 6 5 4 36 36 H 1.09001 * 109.47192 * 330.02360 * 6 5 4 37 37 H 1.08995 * 109.47454 * 300.00120 * 7 6 5 38 38 H 1.09008 * 109.47041 * 60.00321 * 7 6 5 39 39 H 1.08995 * 109.47255 * 300.00550 * 8 7 6 40 40 H 1.08996 * 109.46984 * 60.00569 * 8 7 6 41 41 H 0.96998 * 119.99497 * 0.02562 * 11 9 8 42 42 H 1.09001 * 113.58356 * 335.40277 * 14 12 11 43 43 H 1.09005 * 113.57843 * 106.19556 * 14 12 11 44 44 H 0.97002 * 119.99792 * 72.22204 * 17 15 14 45 45 H 0.96993 * 120.00158 * 179.97438 * 21 20 18 46 46 H 1.08999 * 113.66199 * 215.29216 * 27 26 15 47 47 H 1.09003 * 113.66186 * 346.35277 * 27 26 15 48 48 H 1.09002 * 113.58211 * 270.13598 * 28 27 26 49 49 H 1.09002 * 113.58407 * 139.33754 * 28 27 26 50 50 H 1.09005 * 113.66552 * 13.65232 * 29 26 15 51 51 H 1.09006 * 113.66516 * 144.70424 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0004 6 6 4.8004 -1.5339 0.0003 7 6 5.2142 -1.8322 1.4427 8 6 6.4565 -2.7254 1.4427 9 6 6.8636 -3.0196 2.8635 10 8 6.2230 -2.5606 3.7854 11 7 7.9391 -3.7938 3.1098 12 6 8.3345 -4.0803 4.4910 13 1 7.5031 -4.0125 5.1926 14 6 9.5906 -3.3150 4.9454 15 6 10.0351 -4.6124 5.6490 16 1 11.0995 -4.8243 5.5465 17 7 9.5627 -4.7232 7.0314 18 6 10.4437 -4.5788 8.0697 19 1 11.4867 -4.3827 7.8696 20 6 9.9960 -4.6832 9.3795 21 7 8.7248 -4.9216 9.6234 22 14 11.1976 -4.4854 10.7959 23 1 12.5574 -4.2251 10.2588 24 1 10.7756 -3.3443 11.6474 25 1 11.2151 -5.7289 11.6075 26 6 9.1610 -5.3581 4.6401 27 6 9.7740 -6.0499 3.4221 28 6 9.6354 -7.3662 4.2084 29 6 8.5004 -6.6897 4.9984 30 8 2.3074 -1.0840 -0.0009 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3634 -0.8898 0.5141 33 1 -0.3634 0.8902 0.5134 34 1 1.9821 2.1113 0.0037 35 1 4.5764 -2.4685 -0.5141 36 1 5.6149 -1.0228 -0.5130 37 1 5.4381 -0.8977 1.9571 38 1 4.3996 -2.3434 1.9561 39 1 6.2321 -3.6598 0.9284 40 1 7.2711 -2.2146 0.9293 41 1 8.4512 -4.1612 2.3725 42 1 10.2425 -3.0195 4.1233 43 1 9.3775 -2.4961 5.6326 44 1 8.6258 -4.8989 7.2111 45 1 8.4120 -4.9950 10.5386 46 1 9.1472 -6.0043 2.5315 47 1 10.8076 -5.7622 3.2296 48 1 10.5079 -7.6048 4.8167 49 1 9.3018 -8.2056 3.5983 50 1 8.5164 -6.9131 6.0652 51 1 7.5155 -6.8239 4.5509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203023559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:06 Heat of formation + Delta-G solvation = 0.402276 kcal Electronic energy + Delta-G solvation = -29775.577281 eV Core-core repulsion = 25676.747945 eV Total energy + Delta-G solvation = -4098.829336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.32883 -41.87292 -40.18678 -36.51459 -36.26224 -35.65632 -35.52860 -34.03125 -33.22773 -31.63008 -30.03929 -27.02790 -26.72912 -26.12747 -25.48595 -24.53965 -23.51413 -22.88727 -21.81129 -21.66655 -21.22016 -19.50315 -18.83222 -18.21767 -17.81996 -17.60310 -17.28675 -16.79342 -16.68068 -16.20548 -15.89427 -15.58654 -15.57346 -15.15678 -14.86684 -14.65231 -14.32299 -14.16682 -13.93125 -13.86283 -13.56088 -13.38295 -13.25876 -13.13869 -13.09610 -12.88586 -12.84747 -12.67628 -12.62023 -12.49434 -12.31125 -12.15797 -11.96719 -11.79146 -11.75250 -11.55643 -11.31424 -11.21905 -10.90423 -10.78460 -10.65435 -9.82474 -9.62373 -9.02208 -7.96721 -5.25858 0.42467 1.45016 1.46468 1.56359 1.64023 1.70931 1.72939 2.30899 2.53194 3.11802 3.35004 3.43943 3.57215 3.73898 3.81551 3.84375 3.98380 4.00617 4.02345 4.05056 4.11816 4.20263 4.22543 4.31587 4.40052 4.57986 4.63545 4.64436 4.66583 4.67190 4.70373 4.79751 4.84939 4.87244 4.92371 5.04696 5.08370 5.10856 5.13944 5.16336 5.18898 5.25907 5.27182 5.35234 5.36655 5.49326 5.53051 5.62902 5.78233 6.25301 6.70301 6.72531 7.30221 7.41369 8.06850 8.28803 9.26913 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.001864 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.848032 B =15019.361471 C =16128.821161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.056 4.056 3 C -0.068 4.068 4 N -0.514 5.514 5 C 0.179 3.821 6 C -0.014 4.014 7 C -0.096 4.096 8 C -0.124 4.124 9 C 0.498 3.502 10 O -0.602 6.602 11 N -0.698 5.698 12 C 0.147 3.853 13 H 0.062 0.938 14 C -0.171 4.171 15 C 0.176 3.824 16 H 0.073 0.927 17 N -0.716 5.716 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.298 1.298 25 H -0.293 1.293 26 C -0.112 4.112 27 C -0.092 4.092 28 C -0.126 4.126 29 C -0.136 4.136 30 O -0.215 6.215 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.203 0.797 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.418 0.582 42 H 0.105 0.895 43 H 0.031 0.969 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.037 0.963 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 2.807 -29.803 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C -0.205 4.205 4 N -0.243 5.243 5 C -0.027 4.027 6 C -0.052 4.052 7 C -0.135 4.135 8 C -0.163 4.163 9 C 0.287 3.713 10 O -0.483 6.483 11 N -0.350 5.350 12 C 0.041 3.959 13 H 0.080 0.920 14 C -0.213 4.213 15 C 0.065 3.935 16 H 0.091 0.909 17 N -0.353 5.353 18 C -0.371 4.371 19 H 0.099 0.901 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.225 1.225 25 H -0.220 1.220 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.163 4.163 29 C -0.174 4.174 30 O -0.103 6.103 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.220 0.780 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.050 0.950 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.130 0.870 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.056 0.944 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.550 3.469 -29.055 30.485 hybrid contribution -0.648 -0.022 1.763 1.878 sum -9.197 3.447 -27.293 29.006 Atomic orbital electron populations 1.20487 0.81124 1.05533 1.05171 1.24276 0.96721 0.84010 1.05860 1.23543 0.87508 1.01776 1.07688 1.70416 1.24441 1.10271 1.19217 1.26928 0.85122 0.90575 1.00117 1.20291 0.88373 0.98483 0.98056 1.21191 0.97557 0.99690 0.95093 1.21672 0.99567 1.03731 0.91335 1.21656 0.79483 0.77159 0.92985 1.90740 1.55248 1.53317 1.48953 1.45833 1.29892 1.51171 1.08146 1.21825 0.94523 0.96152 0.83396 0.92025 1.24196 0.98132 0.98651 1.00367 1.20978 0.96296 0.93282 0.82955 0.90883 1.42265 1.08252 1.84431 1.00305 1.19728 0.91829 1.39120 0.86402 0.90085 1.25613 0.97780 1.03595 1.00087 1.69851 1.15193 1.57960 1.19164 0.85047 0.78731 0.76537 0.79290 1.18582 1.22549 1.22010 1.23418 0.97171 0.91966 0.98888 1.22568 1.01794 0.93738 0.94863 1.22694 0.97718 0.97527 0.98370 1.22684 0.98683 0.96309 0.99733 1.84395 1.18345 1.37465 1.70109 0.88007 0.90031 0.87085 0.78035 0.85680 0.85491 0.93436 0.93062 0.84606 0.84967 0.74290 0.87651 0.95002 0.79696 0.94144 0.87019 0.89522 0.91414 0.89524 0.94385 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.43 71.24 0.74 0.19 16 2 C -0.06 -1.00 7.39 24.79 0.18 -0.82 16 3 C -0.07 -1.35 11.80 83.39 0.98 -0.36 16 4 N -0.51 -12.63 11.29 -303.82 -3.43 -16.07 16 5 C 0.18 3.81 7.60 88.34 0.67 4.48 16 6 C -0.01 -0.19 5.84 29.84 0.17 -0.01 16 7 C -0.10 -1.78 4.49 30.59 0.14 -1.65 16 8 C -0.12 -1.62 5.70 29.85 0.17 -1.45 16 9 C 0.50 12.95 7.83 87.66 0.69 13.64 16 10 O -0.60 -23.71 15.60 -3.05 -0.05 -23.76 16 11 N -0.70 -16.02 5.27 -441.15 -2.33 -18.34 16 12 C 0.15 4.86 4.01 45.28 0.18 5.04 16 13 H 0.06 2.71 7.50 -2.39 -0.02 2.69 16 14 C -0.17 -6.07 7.70 31.30 0.24 -5.83 16 15 C 0.18 6.84 4.36 45.34 0.20 7.04 16 16 H 0.07 2.74 8.10 -2.38 -0.02 2.72 16 17 N -0.72 -36.88 4.85 -321.25 -1.56 -38.44 16 18 C -0.24 -13.46 9.97 84.03 0.84 -12.62 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 21 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 22 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 23 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 C -0.11 -3.36 0.92 -52.31 -0.05 -3.41 16 27 C -0.09 -1.78 7.15 30.88 0.22 -1.56 16 28 C -0.13 -2.96 8.08 31.23 0.25 -2.71 16 29 C -0.14 -4.29 7.62 30.88 0.24 -4.06 16 30 O -0.22 -4.67 10.78 -3.70 -0.04 -4.71 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 39 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.42 5.70 6.98 -92.71 -0.65 5.05 16 42 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16 43 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.37 21.17 7.61 -92.71 -0.71 20.46 16 45 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.11 1.42 6.99 -2.39 -0.02 1.40 16 47 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.04 1.53 7.58 -2.38 -0.02 1.51 16 51 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -86.41 419.13 0.83 -85.59 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.41 Total: 36.03 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.34 Total: -8.25 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -7.03 Total: -134.16 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.09 Total: -28.47 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -86.41 0.83 -85.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203023559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.988 kcal (2) G-P(sol) polarization free energy of solvation -86.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds