Wall clock time and date at job start Wed Apr 1 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20921 * 111.60526 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 C 1.53000 * 109.46912 * 269.67754 * 8 7 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88782 * 334.67065 * 13 12 10 15 15 C 1.53955 * 113.66093 * 106.00903 * 13 12 10 16 16 C 1.53950 * 87.29182 * 139.20899 * 15 13 12 17 17 H 1.09001 * 113.66725 * 89.73982 * 16 15 13 18 18 N 1.46508 * 113.66393 * 220.70216 * 16 15 13 19 19 C 1.36935 * 119.99675 * 255.49791 * 18 16 15 20 20 H 1.07993 * 120.00660 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99798 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00074 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47511 * 90.00230 * 23 21 19 25 25 H 1.48504 * 109.46751 * 210.00203 * 23 21 19 26 26 H 1.48499 * 109.47306 * 329.99721 * 23 21 19 27 27 C 1.52907 * 113.66511 * 203.32013 * 13 12 10 28 28 C 1.52902 * 121.14234 * 94.90735 * 27 13 12 29 29 C 1.53944 * 86.78483 * 209.37964 * 28 27 13 30 30 C 1.52914 * 121.13700 * 346.34415 * 27 13 12 31 31 H 1.09001 * 109.47529 * 270.02212 * 1 2 3 32 32 H 1.08998 * 109.47446 * 30.02442 * 1 2 3 33 33 H 1.09005 * 109.47218 * 150.02308 * 1 2 3 34 34 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 35 35 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 36 36 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 37 37 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 38 38 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 39 39 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 40 40 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 41 41 H 0.97005 * 119.99680 * 359.97438 * 12 10 9 42 42 H 1.08997 * 113.58233 * 253.81154 * 15 13 12 43 43 H 1.09001 * 113.58007 * 24.53161 * 15 13 12 44 44 H 0.96998 * 120.00097 * 75.49151 * 18 16 15 45 45 H 0.96993 * 119.99551 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.65924 * 323.85217 * 28 27 13 47 47 H 1.09005 * 113.66430 * 94.90528 * 28 27 13 48 48 H 1.09004 * 113.58109 * 270.13024 * 29 28 27 49 49 H 1.09000 * 113.58284 * 139.33891 * 29 28 27 50 50 H 1.08997 * 113.66218 * 265.09994 * 30 27 13 51 51 H 1.09000 * 113.66081 * 36.15343 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3694 0.0141 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0014 9 6 1.8252 -3.0793 -1.4409 10 6 1.4297 -4.5336 -1.4399 11 8 1.2711 -5.1182 -0.3893 12 7 1.2534 -5.1847 -2.6067 13 6 0.8695 -6.5985 -2.6059 14 1 1.1728 -7.1196 -1.6978 15 6 -0.6004 -6.8398 -2.9949 16 6 -0.1094 -8.0483 -3.8125 17 1 -0.0807 -8.9782 -3.2445 18 7 -0.7780 -8.1926 -5.1081 19 6 -1.7324 -9.1591 -5.2821 20 1 -1.9919 -9.8152 -4.4646 21 6 -2.3663 -9.2954 -6.5096 22 7 -2.0504 -8.4954 -7.5059 23 14 -3.6686 -10.6133 -6.7469 24 1 -5.0021 -10.0598 -6.3997 25 1 -3.6707 -11.0576 -8.1639 26 1 -3.3682 -11.7704 -5.8659 27 6 1.2440 -7.3369 -3.8914 28 6 2.5490 -8.1264 -3.9983 29 6 2.5205 -7.8025 -5.5030 30 6 1.6641 -6.5735 -5.1480 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 5.2208 -1.5553 -1.0115 35 1 5.6633 -0.7848 0.5308 36 1 4.7624 -2.3200 0.5291 37 1 1.0051 -2.7035 0.5155 38 1 2.7229 -3.1699 0.5154 39 1 1.0614 -2.4958 -1.9549 40 1 2.7791 -2.9622 -1.9549 41 1 1.3806 -4.7171 -3.4471 42 1 -1.2354 -7.1125 -2.1521 43 1 -1.0264 -6.0432 -3.6050 44 1 -0.5448 -7.6035 -5.8425 45 1 -2.4930 -8.5909 -8.3636 46 1 3.3829 -7.6670 -3.4676 47 1 2.4375 -9.1880 -3.7771 48 1 1.9908 -8.5457 -6.0991 49 1 3.4981 -7.5490 -5.9131 50 1 0.8457 -6.3944 -5.8452 51 1 2.2494 -5.6777 -4.9404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:00 Heat of formation + Delta-G solvation = 62.244831 kcal Electronic energy + Delta-G solvation = -30471.210960 eV Core-core repulsion = 26375.063318 eV Total energy + Delta-G solvation = -4096.147642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.19270 -40.63518 -39.12540 -36.15748 -34.89145 -34.13709 -34.07061 -32.62429 -31.84912 -29.88429 -28.96625 -28.09822 -25.78769 -25.53281 -24.27036 -24.17004 -22.28117 -21.43487 -20.49315 -20.40480 -20.14176 -18.07529 -17.89698 -17.45293 -17.09873 -16.68646 -16.16789 -15.79571 -15.05789 -14.91128 -14.58634 -14.55287 -14.23721 -13.84816 -13.79813 -13.49798 -13.29571 -13.13231 -13.02801 -12.97428 -12.70435 -12.60849 -12.48129 -12.28272 -12.11637 -11.85929 -11.59839 -11.54001 -11.25467 -11.05785 -10.94241 -10.83613 -10.73853 -10.22693 -10.14357 -10.07148 -9.99696 -9.89001 -9.67111 -9.49402 -9.34118 -8.88567 -8.67715 -7.00598 -5.83368 -3.11662 1.16380 1.89639 2.65095 2.81154 3.26887 3.40168 3.46205 3.47061 3.90292 4.14087 4.45563 4.53805 4.58009 4.70800 4.75780 4.88266 4.90182 4.92677 5.00502 5.01586 5.06197 5.17960 5.20546 5.20912 5.23217 5.29354 5.36583 5.42372 5.46269 5.59327 5.65344 5.71838 5.77503 5.85972 5.87690 5.94170 5.95841 5.97299 6.02645 6.19546 6.29004 6.36484 6.48342 6.56828 6.59002 6.81975 6.89432 7.03995 7.61560 7.66523 8.01264 8.27423 8.35678 9.47389 10.03812 10.38761 11.38969 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.002051 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.828419 B =13648.262762 C =14345.494227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.031 4.031 6 C -0.075 4.075 7 C -0.198 4.198 8 C -0.024 4.024 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.711 5.711 13 C 0.130 3.870 14 H 0.109 0.891 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.080 0.920 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.117 4.117 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.030 14.435 12.940 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.062 4.062 9 C -0.177 4.177 10 C 0.297 3.703 11 O -0.424 6.424 12 N -0.361 5.361 13 C 0.026 3.974 14 H 0.127 0.873 15 C -0.216 4.216 16 C 0.079 3.921 17 H 0.097 0.903 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.120 4.120 28 C -0.164 4.164 29 C -0.168 4.168 30 C -0.155 4.155 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.565 15.163 13.649 24.500 hybrid contribution -0.763 -0.889 -0.896 1.475 sum 12.802 14.275 12.753 23.029 Atomic orbital electron populations 1.20198 0.85903 1.03947 1.03540 1.23498 0.98984 0.88468 1.02504 1.73848 0.89302 1.23985 1.20358 1.84797 1.21648 1.22563 1.67946 1.24287 0.98288 0.83805 1.03045 1.20370 0.89993 0.98700 1.04209 1.21002 0.91570 0.97586 1.10043 1.19590 1.03679 0.87209 0.95705 1.21654 1.03814 0.93397 0.98882 1.20565 0.76850 0.88798 0.84041 1.90692 1.51443 1.69009 1.31247 1.46027 1.69650 1.12235 1.08216 1.22285 0.96665 0.80011 0.98482 0.87341 1.24263 0.94700 1.01938 1.00692 1.21095 0.88050 0.94231 0.88701 0.90262 1.42338 1.44133 1.39741 1.08327 1.19288 1.12580 1.09087 0.96371 0.91070 1.24742 1.00413 0.99534 0.96098 1.69651 1.45437 1.40274 1.02690 0.86196 0.81746 0.81329 0.76953 1.21723 1.21803 1.20722 1.23587 0.96694 0.97781 0.93968 1.22703 0.96647 1.00149 0.96853 1.22732 0.99121 0.98573 0.96342 1.22432 0.99737 0.96512 0.96789 0.90075 0.90481 0.89807 0.89305 0.89837 0.88867 0.89588 0.89704 0.88852 0.88947 0.76599 0.92191 0.90221 0.77782 0.93469 0.91021 0.91475 0.89148 0.92511 0.90287 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 36.00 0.37 -0.23 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.31 12.07 33.42 0.40 -3.90 16 4 O 0.10 0.99 11.20 17.18 0.19 1.19 16 5 C -0.03 -0.26 7.49 -35.30 -0.26 -0.52 16 6 C -0.08 -0.35 10.30 36.00 0.37 0.02 16 7 C -0.20 -1.78 5.58 -104.42 -0.58 -2.36 16 8 C -0.02 -0.20 4.83 -27.88 -0.13 -0.34 16 9 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 10 C 0.51 6.09 7.83 -10.98 -0.09 6.01 16 11 O -0.55 -8.50 15.60 5.56 0.09 -8.42 16 12 N -0.71 -8.43 5.27 -53.37 -0.28 -8.71 16 13 C 0.13 1.88 4.09 -67.48 -0.28 1.60 16 14 H 0.11 1.66 7.50 -51.93 -0.39 1.27 16 15 C -0.17 -2.96 7.68 -25.74 -0.20 -3.15 16 16 C 0.19 3.60 4.35 -67.38 -0.29 3.30 16 17 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 18 N -0.71 -16.54 5.36 -52.89 -0.28 -16.83 16 19 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.12 -1.76 1.07 -154.61 -0.17 -1.93 16 28 C -0.13 -1.73 7.84 -26.29 -0.21 -1.94 16 29 C -0.13 -1.88 8.08 -25.76 -0.21 -2.09 16 30 C -0.12 -1.66 6.77 -26.28 -0.18 -1.84 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.37 7.44 -51.93 -0.39 -0.01 16 37 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.08 0.72 7.40 -51.93 -0.38 0.34 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.40 4.02 6.98 -40.82 -0.28 3.73 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.39 9.50 5.89 -40.82 -0.24 9.26 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 51 H 0.07 0.81 6.99 -51.93 -0.36 0.44 16 LS Contribution 415.06 15.07 6.25 6.25 Total: -1.00 -32.06 415.06 -9.05 -41.11 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.27 Total: 10.97 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.85 Total: -12.14 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.56 Total: -55.82 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.28 Total: -7.23 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.06 -9.05 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.350 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds