Wall clock time and date at job start Wed Apr 1 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20921 * 111.60526 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 C 1.53000 * 109.46912 * 269.67754 * 8 7 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88782 * 334.67065 * 13 12 10 15 15 C 1.53955 * 113.66093 * 106.00903 * 13 12 10 16 16 C 1.53950 * 87.29182 * 139.20899 * 15 13 12 17 17 H 1.09001 * 113.66725 * 89.73982 * 16 15 13 18 18 N 1.46508 * 113.66393 * 220.70216 * 16 15 13 19 19 C 1.36935 * 119.99675 * 255.49791 * 18 16 15 20 20 H 1.07993 * 120.00660 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99798 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00074 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47511 * 90.00230 * 23 21 19 25 25 H 1.48504 * 109.46751 * 210.00203 * 23 21 19 26 26 H 1.48499 * 109.47306 * 329.99721 * 23 21 19 27 27 C 1.52907 * 113.66511 * 203.32013 * 13 12 10 28 28 C 1.52902 * 121.14234 * 94.90735 * 27 13 12 29 29 C 1.53944 * 86.78483 * 209.37964 * 28 27 13 30 30 C 1.52914 * 121.13700 * 346.34415 * 27 13 12 31 31 H 1.09001 * 109.47529 * 270.02212 * 1 2 3 32 32 H 1.08998 * 109.47446 * 30.02442 * 1 2 3 33 33 H 1.09005 * 109.47218 * 150.02308 * 1 2 3 34 34 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 35 35 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 36 36 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 37 37 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 38 38 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 39 39 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 40 40 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 41 41 H 0.97005 * 119.99680 * 359.97438 * 12 10 9 42 42 H 1.08997 * 113.58233 * 253.81154 * 15 13 12 43 43 H 1.09001 * 113.58007 * 24.53161 * 15 13 12 44 44 H 0.96998 * 120.00097 * 75.49151 * 18 16 15 45 45 H 0.96993 * 119.99551 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.65924 * 323.85217 * 28 27 13 47 47 H 1.09005 * 113.66430 * 94.90528 * 28 27 13 48 48 H 1.09004 * 113.58109 * 270.13024 * 29 28 27 49 49 H 1.09000 * 113.58284 * 139.33891 * 29 28 27 50 50 H 1.08997 * 113.66218 * 265.09994 * 30 27 13 51 51 H 1.09000 * 113.66081 * 36.15343 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3694 0.0141 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0014 9 6 1.8252 -3.0793 -1.4409 10 6 1.4297 -4.5336 -1.4399 11 8 1.2711 -5.1182 -0.3893 12 7 1.2534 -5.1847 -2.6067 13 6 0.8695 -6.5985 -2.6059 14 1 1.1728 -7.1196 -1.6978 15 6 -0.6004 -6.8398 -2.9949 16 6 -0.1094 -8.0483 -3.8125 17 1 -0.0807 -8.9782 -3.2445 18 7 -0.7780 -8.1926 -5.1081 19 6 -1.7324 -9.1591 -5.2821 20 1 -1.9919 -9.8152 -4.4646 21 6 -2.3663 -9.2954 -6.5096 22 7 -2.0504 -8.4954 -7.5059 23 14 -3.6686 -10.6133 -6.7469 24 1 -5.0021 -10.0598 -6.3997 25 1 -3.6707 -11.0576 -8.1639 26 1 -3.3682 -11.7704 -5.8659 27 6 1.2440 -7.3369 -3.8914 28 6 2.5490 -8.1264 -3.9983 29 6 2.5205 -7.8025 -5.5030 30 6 1.6641 -6.5735 -5.1480 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 5.2208 -1.5553 -1.0115 35 1 5.6633 -0.7848 0.5308 36 1 4.7624 -2.3200 0.5291 37 1 1.0051 -2.7035 0.5155 38 1 2.7229 -3.1699 0.5154 39 1 1.0614 -2.4958 -1.9549 40 1 2.7791 -2.9622 -1.9549 41 1 1.3806 -4.7171 -3.4471 42 1 -1.2354 -7.1125 -2.1521 43 1 -1.0264 -6.0432 -3.6050 44 1 -0.5448 -7.6035 -5.8425 45 1 -2.4930 -8.5909 -8.3636 46 1 3.3829 -7.6670 -3.4676 47 1 2.4375 -9.1880 -3.7771 48 1 1.9908 -8.5457 -6.0991 49 1 3.4981 -7.5490 -5.9131 50 1 0.8457 -6.3944 -5.8452 51 1 2.2494 -5.6777 -4.9404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:59 Heat of formation + Delta-G solvation = 43.339011 kcal Electronic energy + Delta-G solvation = -30472.030778 eV Core-core repulsion = 26375.063318 eV Total energy + Delta-G solvation = -4096.967459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.90609 -41.85944 -40.17665 -36.86551 -36.24855 -35.66802 -34.72083 -34.01555 -32.67953 -31.62512 -29.62078 -28.65346 -26.87160 -26.71053 -25.83906 -25.40795 -23.61992 -22.29301 -21.75346 -21.22625 -20.94775 -19.61937 -18.85025 -18.58452 -18.13982 -17.65407 -17.40376 -16.64139 -16.35419 -16.31310 -16.03762 -15.40499 -15.26007 -14.90224 -14.75576 -14.31542 -14.27637 -14.05097 -13.93919 -13.68363 -13.64677 -13.48002 -13.40483 -13.21095 -13.15596 -13.08883 -12.90394 -12.85505 -12.72441 -12.30463 -12.24704 -12.20972 -12.03595 -11.84253 -11.71602 -11.30805 -11.19766 -10.96581 -10.87111 -10.72439 -10.66198 -10.03631 -9.82023 -8.93908 -7.93858 -5.20308 0.51483 1.19795 1.47580 1.48082 1.56305 1.71528 2.19278 2.33553 2.57694 3.24497 3.37495 3.52298 3.54714 3.63917 3.73699 3.81467 3.89401 3.96536 4.04135 4.06661 4.15301 4.27358 4.34256 4.35221 4.43792 4.57330 4.61887 4.63085 4.70332 4.73347 4.74562 4.78809 4.83090 4.84543 4.88781 4.92818 5.04882 5.07361 5.12197 5.12581 5.16386 5.18185 5.23908 5.36722 5.41987 5.52959 5.54999 5.66222 5.74827 6.29079 6.66786 7.33118 7.34144 7.36440 8.13139 8.37480 9.29103 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.002051 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.828419 B =13648.262762 C =14345.494227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.015 3.985 3 N -0.402 5.402 4 O 0.081 5.919 5 C -0.022 4.022 6 C -0.077 4.077 7 C -0.209 4.209 8 C -0.016 4.016 9 C -0.127 4.127 10 C 0.513 3.487 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.152 3.848 14 H 0.105 0.895 15 C -0.170 4.170 16 C 0.171 3.829 17 H 0.072 0.928 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.967 3.033 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.131 4.131 30 C -0.110 4.110 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.411 0.589 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.379 0.621 45 H 0.250 0.750 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.049 0.951 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.992 14.983 13.772 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 N -0.111 5.111 4 O 0.019 5.981 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.213 4.213 8 C -0.054 4.054 9 C -0.167 4.167 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.355 5.355 13 C 0.046 3.954 14 H 0.123 0.877 15 C -0.212 4.212 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.355 5.355 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.196 1.196 27 C -0.111 4.111 28 C -0.153 4.153 29 C -0.169 4.169 30 C -0.148 4.148 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.248 0.752 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.213 0.787 45 H 0.059 0.941 46 H 0.119 0.881 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.068 0.932 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.564 15.725 14.519 26.464 hybrid contribution -1.338 -1.057 -1.059 2.007 sum 14.226 14.668 13.460 24.468 Atomic orbital electron populations 1.20285 0.84798 1.04451 1.04150 1.23934 0.99971 0.88687 1.01779 1.73845 0.89926 1.25092 1.22226 1.84759 1.21305 1.23744 1.68268 1.24953 0.99562 0.83082 1.00964 1.20597 0.88441 0.98677 1.05649 1.21030 0.91712 0.97394 1.11122 1.19491 1.03157 0.86932 0.95845 1.21639 1.05478 0.90431 0.99123 1.21148 0.75624 0.89940 0.83108 1.90688 1.52983 1.70109 1.32548 1.45900 1.69386 1.11103 1.09105 1.21849 0.94082 0.81649 0.97797 0.87701 1.24101 0.96676 1.00590 0.99822 1.21377 0.90696 0.94900 0.86977 0.91041 1.42434 1.44165 1.39090 1.09845 1.19638 1.12402 1.08995 0.96150 0.90974 1.25455 1.02909 1.01922 0.96193 1.69791 1.46902 1.42123 1.02866 0.85237 0.79286 0.79335 0.76498 1.21765 1.22298 1.19644 1.23334 0.95318 0.97718 0.94737 1.22707 0.96462 0.99721 0.96372 1.22645 0.99972 0.97722 0.96529 1.22474 0.99131 0.97858 0.95298 0.89399 0.90355 0.88881 0.87508 0.88584 0.87876 0.90800 0.89450 0.87681 0.86220 0.75201 0.92921 0.91298 0.78688 0.94104 0.88082 0.92309 0.92939 0.89860 0.93230 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.39 71.23 0.74 -0.41 16 2 C 0.01 0.28 7.33 43.57 0.32 0.60 16 3 N -0.40 -9.16 12.07 -49.55 -0.60 -9.76 16 4 O 0.08 1.62 11.20 71.66 0.80 2.42 16 5 C -0.02 -0.32 7.49 25.04 0.19 -0.13 16 6 C -0.08 -0.46 10.30 71.24 0.73 0.27 16 7 C -0.21 -3.35 5.58 -19.73 -0.11 -3.46 16 8 C -0.02 -0.24 4.83 29.85 0.14 -0.09 16 9 C -0.13 -1.68 5.68 29.85 0.17 -1.51 16 10 C 0.51 10.80 7.83 87.66 0.69 11.49 16 11 O -0.58 -17.03 15.60 -3.01 -0.05 -17.08 16 12 N -0.70 -14.65 5.27 -441.15 -2.33 -16.98 16 13 C 0.15 4.11 4.09 45.28 0.19 4.29 16 14 H 0.11 3.02 7.50 -2.39 -0.02 3.00 16 15 C -0.17 -5.75 7.68 31.23 0.24 -5.51 16 16 C 0.17 6.46 4.35 45.34 0.20 6.66 16 17 H 0.07 2.78 8.12 -2.39 -0.02 2.76 16 18 N -0.72 -34.37 5.36 -321.24 -1.72 -36.09 16 19 C -0.24 -13.00 9.98 84.03 0.84 -12.16 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 23 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 C -0.11 -3.10 1.07 -52.25 -0.06 -3.16 16 28 C -0.12 -2.90 7.84 30.88 0.24 -2.65 16 29 C -0.13 -3.58 8.08 31.23 0.25 -3.33 16 30 C -0.11 -2.92 6.77 30.88 0.21 -2.71 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.10 0.46 7.44 -2.39 -0.02 0.44 16 37 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.09 1.26 7.40 -2.39 -0.02 1.25 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.41 6.77 6.98 -92.70 -0.65 6.12 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 44 H 0.38 19.23 5.89 -92.71 -0.55 18.68 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.05 1.65 6.43 -2.39 -0.02 1.63 16 51 H 0.11 2.05 6.99 -2.39 -0.02 2.04 16 Total: -1.00 -71.59 415.06 3.63 -67.97 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.24 Total: 34.53 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.45 Total: -15.42 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -4.36 Total: -120.16 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.76 Total: -14.66 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.59 3.63 -67.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.308 kcal (2) G-P(sol) polarization free energy of solvation -71.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds