Wall clock time and date at job start Wed Apr 1 2020 04:40:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30171 * 126.80164 * 2 1
4 4 O 1.20925 * 111.59960 * 179.79857 * 3 2 1
5 5 C 1.34038 * 111.57104 * 0.48120 * 4 3 2
6 6 C 1.50699 * 126.78384 * 179.69030 * 5 4 3
7 7 C 1.35456 * 106.44203 * 359.71288 * 5 4 3
8 8 C 1.50698 * 128.00400 * 180.02562 * 7 5 4
9 9 C 1.53003 * 109.47046 * 269.95163 * 8 7 5
10 10 C 1.50698 * 109.47046 * 179.97438 * 9 8 7
11 11 O 1.21281 * 120.00517 * 0.02562 * 10 9 8
12 12 N 1.34776 * 120.00225 * 180.02562 * 10 9 8
13 13 C 1.46497 * 120.00708 * 180.02562 * 12 10 9
14 14 H 1.09003 * 112.88095 * 334.66853 * 13 12 10
15 15 C 1.53953 * 113.66473 * 106.00913 * 13 12 10
16 16 C 1.53941 * 87.29537 * 139.21110 * 15 13 12
17 17 H 1.09003 * 113.66661 * 220.79302 * 16 15 13
18 18 N 1.46496 * 113.66539 * 89.82964 * 16 15 13
19 19 C 1.36940 * 120.00186 * 104.50121 * 18 16 15
20 20 H 1.08005 * 119.99781 * 0.02562 * 19 18 16
21 21 C 1.38813 * 120.00520 * 180.02562 * 19 18 16
22 22 N 1.31622 * 119.99395 * 0.02562 * 21 19 18
23 23 Si 1.86791 * 120.00327 * 180.02562 * 21 19 18
24 24 H 1.48500 * 109.47366 * 359.97438 * 23 21 19
25 25 H 1.48493 * 109.47310 * 120.00450 * 23 21 19
26 26 H 1.48505 * 109.47049 * 240.00511 * 23 21 19
27 27 C 1.52898 * 113.66575 * 203.31956 * 13 12 10
28 28 C 1.52908 * 121.14120 * 94.90659 * 27 13 12
29 29 C 1.53953 * 86.78617 * 209.37558 * 28 27 13
30 30 C 1.52910 * 121.13876 * 346.34098 * 27 13 12
31 31 H 1.08999 * 109.47015 * 269.69137 * 1 2 3
32 32 H 1.09000 * 109.46646 * 29.68289 * 1 2 3
33 33 H 1.09000 * 109.47248 * 149.69007 * 1 2 3
34 34 H 1.08997 * 109.46938 * 270.02925 * 6 5 4
35 35 H 1.09001 * 109.46719 * 30.02203 * 6 5 4
36 36 H 1.08993 * 109.47513 * 150.02383 * 6 5 4
37 37 H 1.09001 * 109.47779 * 29.95297 * 8 7 5
38 38 H 1.09002 * 109.47107 * 149.95118 * 8 7 5
39 39 H 1.08996 * 109.47214 * 300.00274 * 9 8 7
40 40 H 1.08998 * 109.46764 * 60.00171 * 9 8 7
41 41 H 0.97004 * 119.99310 * 359.97438 * 12 10 9
42 42 H 1.08999 * 113.58078 * 253.81588 * 15 13 12
43 43 H 1.09003 * 113.57855 * 24.60304 * 15 13 12
44 44 H 0.97004 * 120.00402 * 284.50682 * 18 16 15
45 45 H 0.97002 * 119.99967 * 179.97438 * 22 21 19
46 46 H 1.08996 * 113.66344 * 323.84863 * 28 27 13
47 47 H 1.08998 * 113.66694 * 94.90225 * 28 27 13
48 48 H 1.08998 * 113.58259 * 270.13489 * 29 28 27
49 49 H 1.09003 * 113.57960 * 139.33587 * 29 28 27
50 50 H 1.08996 * 113.66456 * 265.09517 * 30 27 13
51 51 H 1.08999 * 113.66237 * 36.15358 * 30 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7252 0.0040
5 6 3.6025 -0.6069 -0.0033
6 6 4.9021 -1.3698 -0.0079
7 6 2.3539 -1.1321 -0.0062
8 6 1.9590 -2.5864 -0.0136
9 6 1.8245 -3.0710 -1.4586
10 6 1.4302 -4.5254 -1.4660
11 8 1.2719 -5.1162 -0.4187
12 7 1.2535 -5.1698 -2.6365
13 6 0.8697 -6.5836 -2.6438
14 1 1.1734 -7.1099 -1.7388
15 6 -0.6003 -6.8228 -3.0338
16 6 -0.1096 -8.0265 -3.8585
17 1 -0.6062 -8.1274 -4.8235
18 7 -0.0726 -9.2811 -3.1030
19 6 -1.0359 -10.2326 -3.3081
20 1 -1.8226 -10.0582 -4.0273
21 6 -1.0012 -11.4211 -2.5919
22 7 -0.0427 -11.6333 -1.7151
23 14 -2.3147 -12.7193 -2.8723
24 1 -3.2720 -12.2406 -3.9018
25 1 -1.6764 -13.9773 -3.3361
26 1 -3.0406 -12.9717 -1.6016
27 6 1.2438 -7.3144 -3.9336
28 6 2.5488 -8.1033 -4.0455
29 6 2.5199 -7.7708 -5.5484
30 6 1.6635 -6.5438 -5.1859
31 1 -0.3633 -0.0055 1.0276
32 1 -0.3632 0.8928 -0.5089
33 1 -0.3634 -0.8872 -0.5186
34 1 5.2153 -1.5477 -1.0366
35 1 5.6660 -0.7891 0.5092
36 1 4.7651 -2.3241 0.5004
37 1 2.7229 -3.1730 0.4967
38 1 1.0052 -2.7065 0.5002
39 1 1.0606 -2.4844 -1.9689
40 1 2.7783 -2.9508 -1.9723
41 1 1.3798 -4.6972 -3.4741
42 1 -1.2351 -7.1004 -2.1923
43 1 -1.0262 -6.0233 -3.6401
44 1 0.6341 -9.4378 -2.4572
45 1 -0.0187 -12.4637 -1.2143
46 1 3.3829 -7.6470 -3.5125
47 1 2.4375 -9.1661 -3.8304
48 1 1.9900 -8.5104 -6.1486
49 1 3.4974 -7.5148 -5.9572
50 1 0.8449 -6.3607 -5.8818
51 1 2.2488 -5.6492 -4.9733
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001203714473.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:03
Heat of formation + Delta-G solvation = 62.842811 kcal
Electronic energy + Delta-G solvation = -30523.144137 eV
Core-core repulsion = 26427.022426 eV
Total energy + Delta-G solvation = -4096.121711 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-45.18100 -40.61387 -39.07200 -36.13345 -35.06375 -34.09091 -34.04428 -32.52050
-31.81949 -29.66793 -28.96188 -28.07431 -25.77636 -25.55855 -24.21850 -24.15061
-22.54315 -21.53032 -20.41059 -20.38381 -20.13391 -18.03678 -17.76972 -17.39727
-17.07541 -16.76145 -16.03678 -15.73402 -15.16547 -14.92157 -14.64125 -14.36009
-14.08774 -13.86420 -13.78657 -13.48327 -13.26591 -13.17935 -13.01593 -12.87997
-12.70080 -12.59189 -12.47003 -12.27337 -12.17562 -11.93046 -11.63751 -11.56970
-11.40616 -11.03665 -10.92610 -10.86188 -10.75934 -10.16092 -10.12682 -10.07928
-9.85290 -9.83091 -9.58417 -9.53430 -9.31119 -8.88817 -8.62044 -7.01634
-5.81209 -3.10890 1.17632 1.90723 2.72586 2.82512 3.32402 3.41197
3.46896 3.49234 3.91135 4.15605 4.47751 4.50146 4.60311 4.73018
4.74352 4.86871 4.90733 4.92794 4.97446 5.03645 5.06367 5.16156
5.18863 5.23394 5.28336 5.33259 5.38761 5.43167 5.46948 5.61077
5.63525 5.74263 5.77526 5.80399 5.89666 5.91862 5.98469 5.99768
6.02966 6.09003 6.21700 6.41171 6.53906 6.63949 6.69100 6.76122
6.85170 7.06988 7.65878 7.68837 8.01949 8.35746 8.37031 9.48233
10.04229 10.38662 11.40887
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016505 B = 0.002106 C = 0.002009
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1696.016764 B =13291.889676 C =13935.749951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.024 3.976
3 N -0.370 5.370
4 O 0.095 5.905
5 C -0.030 4.030
6 C -0.076 4.076
7 C -0.197 4.197
8 C -0.025 4.025
9 C -0.136 4.136
10 C 0.508 3.492
11 O -0.538 6.538
12 N -0.716 5.716
13 C 0.139 3.861
14 H 0.113 0.887
15 C -0.182 4.182
16 C 0.197 3.803
17 H 0.066 0.934
18 N -0.701 5.701
19 C -0.243 4.243
20 H 0.072 0.928
21 C -0.010 4.010
22 N -0.929 5.929
23 Si 0.908 3.092
24 H -0.280 1.280
25 H -0.291 1.291
26 H -0.291 1.291
27 C -0.122 4.122
28 C -0.126 4.126
29 C -0.133 4.133
30 C -0.115 4.115
31 H 0.081 0.919
32 H 0.076 0.924
33 H 0.083 0.917
34 H 0.088 0.912
35 H 0.083 0.917
36 H 0.093 0.907
37 H 0.085 0.915
38 H 0.086 0.914
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.395 0.605
42 H 0.072 0.928
43 H 0.068 0.932
44 H 0.387 0.613
45 H 0.256 0.744
46 H 0.071 0.929
47 H 0.082 0.918
48 H 0.081 0.919
49 H 0.058 0.942
50 H 0.067 0.933
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.688 22.563 -2.265 24.284
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.135 4.135
3 N -0.076 5.076
4 O 0.030 5.970
5 C -0.094 4.094
6 C -0.133 4.133
7 C -0.201 4.201
8 C -0.063 4.063
9 C -0.176 4.176
10 C 0.294 3.706
11 O -0.415 6.415
12 N -0.366 5.366
13 C 0.035 3.965
14 H 0.131 0.869
15 C -0.224 4.224
16 C 0.084 3.916
17 H 0.084 0.916
18 N -0.339 5.339
19 C -0.374 4.374
20 H 0.090 0.910
21 C -0.207 4.207
22 N -0.576 5.576
23 Si 0.739 3.261
24 H -0.205 1.205
25 H -0.218 1.218
26 H -0.218 1.218
27 C -0.125 4.125
28 C -0.163 4.163
29 C -0.171 4.171
30 C -0.153 4.153
31 H 0.100 0.900
32 H 0.095 0.905
33 H 0.102 0.898
34 H 0.107 0.893
35 H 0.102 0.898
36 H 0.112 0.888
37 H 0.104 0.896
38 H 0.105 0.895
39 H 0.110 0.890
40 H 0.109 0.891
41 H 0.230 0.770
42 H 0.091 0.909
43 H 0.086 0.914
44 H 0.221 0.779
45 H 0.066 0.934
46 H 0.089 0.911
47 H 0.101 0.899
48 H 0.100 0.900
49 H 0.077 0.923
50 H 0.086 0.914
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 8.214 23.292 -1.545 24.746
hybrid contribution -0.506 -1.193 -0.245 1.319
sum 7.708 22.099 -1.790 23.473
Atomic orbital electron populations
1.20196 0.85929 1.03828 1.03590 1.23494 0.98969 0.88490 1.02542
1.73843 0.89316 1.23991 1.20419 1.84794 1.21635 1.22590 1.67982
1.24295 0.98316 0.83758 1.03013 1.20375 0.89970 0.98769 1.04191
1.21011 0.91561 0.97598 1.09956 1.19605 1.03811 0.87205 0.95725
1.21643 1.03632 0.93480 0.98826 1.20580 0.77087 0.88809 0.84160
1.90742 1.50704 1.68516 1.31519 1.46101 1.70087 1.12470 1.07945
1.22399 0.95951 0.79350 0.98790 0.86907 1.24277 0.95786 1.00479
1.01889 1.20669 0.90689 0.85842 0.94448 0.91604 1.42113 1.32046
1.13491 1.46256 1.19282 1.04226 0.95265 1.18631 0.90959 1.24765
0.98622 0.98281 0.99017 1.69676 1.33723 1.26048 1.28186 0.86112
0.80950 0.81747 0.77319 1.20520 1.21850 1.21827 1.23589 0.97393
0.97583 0.93920 1.22631 0.96235 1.01901 0.95553 1.22742 0.99218
0.97837 0.97285 1.22528 0.99433 0.96863 0.96499 0.90042 0.90542
0.89845 0.89321 0.89831 0.88791 0.89606 0.89539 0.89026 0.89053
0.77042 0.90938 0.91359 0.77855 0.93432 0.91088 0.89925 0.90042
0.92278 0.91429 0.90753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.60 10.39 36.01 0.37 -0.22 16
2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16
3 N -0.37 -4.32 12.07 33.42 0.40 -3.91 16
4 O 0.09 1.00 11.20 17.18 0.19 1.19 16
5 C -0.03 -0.26 7.49 -35.30 -0.26 -0.52 16
6 C -0.08 -0.38 10.30 36.01 0.37 -0.01 16
7 C -0.20 -1.83 5.58 -104.42 -0.58 -2.41 16
8 C -0.03 -0.23 4.83 -27.88 -0.13 -0.37 16
9 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16
10 C 0.51 6.49 7.83 -10.99 -0.09 6.41 16
11 O -0.54 -9.38 15.60 5.56 0.09 -9.29 16
12 N -0.72 -8.69 5.27 -53.38 -0.28 -8.97 16
13 C 0.14 2.21 4.02 -67.49 -0.27 1.94 16
14 H 0.11 2.21 7.50 -51.93 -0.39 1.82 16
15 C -0.18 -3.12 7.68 -25.75 -0.20 -3.32 16
16 C 0.20 3.71 4.36 -67.39 -0.29 3.42 16
17 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16
18 N -0.70 -16.87 4.92 -52.90 -0.26 -17.13 16
19 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16
20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16
21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16
22 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16
23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16
24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
27 C -0.12 -1.84 0.92 -154.61 -0.14 -1.99 16
28 C -0.13 -1.92 7.60 -26.28 -0.20 -2.12 16
29 C -0.13 -1.71 8.08 -25.74 -0.21 -1.92 16
30 C -0.12 -1.34 7.16 -26.28 -0.19 -1.53 16
31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16
35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
36 H 0.09 0.44 7.44 -51.93 -0.39 0.05 16
37 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16
38 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16
39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
41 H 0.40 3.64 6.98 -40.82 -0.28 3.36 16
42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
44 H 0.39 10.03 7.47 -40.82 -0.30 9.72 16
45 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16
46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
47 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16
48 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
51 H 0.07 0.71 6.99 -51.93 -0.36 0.35 16
LS Contribution 417.22 15.07 6.29 6.29
Total: -1.00 -32.91 417.22 -9.09 -42.00
By element:
Atomic # 1 Polarization: 19.49 SS G_CDS: -8.39 Total: 11.10 kcal
Atomic # 6 Polarization: -8.60 SS G_CDS: -2.83 Total: -11.43 kcal
Atomic # 7 Polarization: -57.50 SS G_CDS: 0.59 Total: -56.91 kcal
Atomic # 8 Polarization: -8.38 SS G_CDS: 0.28 Total: -8.10 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -32.91 -9.09 -42.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001203714473.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.838 kcal
(2) G-P(sol) polarization free energy of solvation -32.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds