Wall clock time and date at job start Wed Apr 1 2020 04:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30171 * 126.80164 * 2 1 4 4 O 1.20925 * 111.59960 * 179.79857 * 3 2 1 5 5 C 1.34038 * 111.57104 * 0.48120 * 4 3 2 6 6 C 1.50699 * 126.78384 * 179.69030 * 5 4 3 7 7 C 1.35456 * 106.44203 * 359.71288 * 5 4 3 8 8 C 1.50698 * 128.00400 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47046 * 269.95163 * 8 7 5 10 10 C 1.50698 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00517 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00225 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00708 * 180.02562 * 12 10 9 14 14 H 1.09003 * 112.88095 * 334.66853 * 13 12 10 15 15 C 1.53953 * 113.66473 * 106.00913 * 13 12 10 16 16 C 1.53941 * 87.29537 * 139.21110 * 15 13 12 17 17 H 1.09003 * 113.66661 * 220.79302 * 16 15 13 18 18 N 1.46496 * 113.66539 * 89.82964 * 16 15 13 19 19 C 1.36940 * 120.00186 * 104.50121 * 18 16 15 20 20 H 1.08005 * 119.99781 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00520 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99395 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00327 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47366 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47310 * 120.00450 * 23 21 19 26 26 H 1.48505 * 109.47049 * 240.00511 * 23 21 19 27 27 C 1.52898 * 113.66575 * 203.31956 * 13 12 10 28 28 C 1.52908 * 121.14120 * 94.90659 * 27 13 12 29 29 C 1.53953 * 86.78617 * 209.37558 * 28 27 13 30 30 C 1.52910 * 121.13876 * 346.34098 * 27 13 12 31 31 H 1.08999 * 109.47015 * 269.69137 * 1 2 3 32 32 H 1.09000 * 109.46646 * 29.68289 * 1 2 3 33 33 H 1.09000 * 109.47248 * 149.69007 * 1 2 3 34 34 H 1.08997 * 109.46938 * 270.02925 * 6 5 4 35 35 H 1.09001 * 109.46719 * 30.02203 * 6 5 4 36 36 H 1.08993 * 109.47513 * 150.02383 * 6 5 4 37 37 H 1.09001 * 109.47779 * 29.95297 * 8 7 5 38 38 H 1.09002 * 109.47107 * 149.95118 * 8 7 5 39 39 H 1.08996 * 109.47214 * 300.00274 * 9 8 7 40 40 H 1.08998 * 109.46764 * 60.00171 * 9 8 7 41 41 H 0.97004 * 119.99310 * 359.97438 * 12 10 9 42 42 H 1.08999 * 113.58078 * 253.81588 * 15 13 12 43 43 H 1.09003 * 113.57855 * 24.60304 * 15 13 12 44 44 H 0.97004 * 120.00402 * 284.50682 * 18 16 15 45 45 H 0.97002 * 119.99967 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.66344 * 323.84863 * 28 27 13 47 47 H 1.08998 * 113.66694 * 94.90225 * 28 27 13 48 48 H 1.08998 * 113.58259 * 270.13489 * 29 28 27 49 49 H 1.09003 * 113.57960 * 139.33587 * 29 28 27 50 50 H 1.08996 * 113.66456 * 265.09517 * 30 27 13 51 51 H 1.08999 * 113.66237 * 36.15358 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7252 0.0040 5 6 3.6025 -0.6069 -0.0033 6 6 4.9021 -1.3698 -0.0079 7 6 2.3539 -1.1321 -0.0062 8 6 1.9590 -2.5864 -0.0136 9 6 1.8245 -3.0710 -1.4586 10 6 1.4302 -4.5254 -1.4660 11 8 1.2719 -5.1162 -0.4187 12 7 1.2535 -5.1698 -2.6365 13 6 0.8697 -6.5836 -2.6438 14 1 1.1734 -7.1099 -1.7388 15 6 -0.6003 -6.8228 -3.0338 16 6 -0.1096 -8.0265 -3.8585 17 1 -0.6062 -8.1274 -4.8235 18 7 -0.0726 -9.2811 -3.1030 19 6 -1.0359 -10.2326 -3.3081 20 1 -1.8226 -10.0582 -4.0273 21 6 -1.0012 -11.4211 -2.5919 22 7 -0.0427 -11.6333 -1.7151 23 14 -2.3147 -12.7193 -2.8723 24 1 -3.2720 -12.2406 -3.9018 25 1 -1.6764 -13.9773 -3.3361 26 1 -3.0406 -12.9717 -1.6016 27 6 1.2438 -7.3144 -3.9336 28 6 2.5488 -8.1033 -4.0455 29 6 2.5199 -7.7708 -5.5484 30 6 1.6635 -6.5438 -5.1859 31 1 -0.3633 -0.0055 1.0276 32 1 -0.3632 0.8928 -0.5089 33 1 -0.3634 -0.8872 -0.5186 34 1 5.2153 -1.5477 -1.0366 35 1 5.6660 -0.7891 0.5092 36 1 4.7651 -2.3241 0.5004 37 1 2.7229 -3.1730 0.4967 38 1 1.0052 -2.7065 0.5002 39 1 1.0606 -2.4844 -1.9689 40 1 2.7783 -2.9508 -1.9723 41 1 1.3798 -4.6972 -3.4741 42 1 -1.2351 -7.1004 -2.1923 43 1 -1.0262 -6.0233 -3.6401 44 1 0.6341 -9.4378 -2.4572 45 1 -0.0187 -12.4637 -1.2143 46 1 3.3829 -7.6470 -3.5125 47 1 2.4375 -9.1661 -3.8304 48 1 1.9900 -8.5104 -6.1486 49 1 3.4974 -7.5148 -5.9572 50 1 0.8449 -6.3607 -5.8818 51 1 2.2488 -5.6492 -4.9733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:03 Heat of formation + Delta-G solvation = 62.842811 kcal Electronic energy + Delta-G solvation = -30523.144137 eV Core-core repulsion = 26427.022426 eV Total energy + Delta-G solvation = -4096.121711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.18100 -40.61387 -39.07200 -36.13345 -35.06375 -34.09091 -34.04428 -32.52050 -31.81949 -29.66793 -28.96188 -28.07431 -25.77636 -25.55855 -24.21850 -24.15061 -22.54315 -21.53032 -20.41059 -20.38381 -20.13391 -18.03678 -17.76972 -17.39727 -17.07541 -16.76145 -16.03678 -15.73402 -15.16547 -14.92157 -14.64125 -14.36009 -14.08774 -13.86420 -13.78657 -13.48327 -13.26591 -13.17935 -13.01593 -12.87997 -12.70080 -12.59189 -12.47003 -12.27337 -12.17562 -11.93046 -11.63751 -11.56970 -11.40616 -11.03665 -10.92610 -10.86188 -10.75934 -10.16092 -10.12682 -10.07928 -9.85290 -9.83091 -9.58417 -9.53430 -9.31119 -8.88817 -8.62044 -7.01634 -5.81209 -3.10890 1.17632 1.90723 2.72586 2.82512 3.32402 3.41197 3.46896 3.49234 3.91135 4.15605 4.47751 4.50146 4.60311 4.73018 4.74352 4.86871 4.90733 4.92794 4.97446 5.03645 5.06367 5.16156 5.18863 5.23394 5.28336 5.33259 5.38761 5.43167 5.46948 5.61077 5.63525 5.74263 5.77526 5.80399 5.89666 5.91862 5.98469 5.99768 6.02966 6.09003 6.21700 6.41171 6.53906 6.63949 6.69100 6.76122 6.85170 7.06988 7.65878 7.68837 8.01949 8.35746 8.37031 9.48233 10.04229 10.38662 11.40887 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.002106 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.016764 B =13291.889676 C =13935.749951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.030 4.030 6 C -0.076 4.076 7 C -0.197 4.197 8 C -0.025 4.025 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.538 6.538 12 N -0.716 5.716 13 C 0.139 3.861 14 H 0.113 0.887 15 C -0.182 4.182 16 C 0.197 3.803 17 H 0.066 0.934 18 N -0.701 5.701 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.122 4.122 28 C -0.126 4.126 29 C -0.133 4.133 30 C -0.115 4.115 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.395 0.605 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 22.563 -2.265 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.201 4.201 8 C -0.063 4.063 9 C -0.176 4.176 10 C 0.294 3.706 11 O -0.415 6.415 12 N -0.366 5.366 13 C 0.035 3.965 14 H 0.131 0.869 15 C -0.224 4.224 16 C 0.084 3.916 17 H 0.084 0.916 18 N -0.339 5.339 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.125 4.125 28 C -0.163 4.163 29 C -0.171 4.171 30 C -0.153 4.153 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.230 0.770 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.214 23.292 -1.545 24.746 hybrid contribution -0.506 -1.193 -0.245 1.319 sum 7.708 22.099 -1.790 23.473 Atomic orbital electron populations 1.20196 0.85929 1.03828 1.03590 1.23494 0.98969 0.88490 1.02542 1.73843 0.89316 1.23991 1.20419 1.84794 1.21635 1.22590 1.67982 1.24295 0.98316 0.83758 1.03013 1.20375 0.89970 0.98769 1.04191 1.21011 0.91561 0.97598 1.09956 1.19605 1.03811 0.87205 0.95725 1.21643 1.03632 0.93480 0.98826 1.20580 0.77087 0.88809 0.84160 1.90742 1.50704 1.68516 1.31519 1.46101 1.70087 1.12470 1.07945 1.22399 0.95951 0.79350 0.98790 0.86907 1.24277 0.95786 1.00479 1.01889 1.20669 0.90689 0.85842 0.94448 0.91604 1.42113 1.32046 1.13491 1.46256 1.19282 1.04226 0.95265 1.18631 0.90959 1.24765 0.98622 0.98281 0.99017 1.69676 1.33723 1.26048 1.28186 0.86112 0.80950 0.81747 0.77319 1.20520 1.21850 1.21827 1.23589 0.97393 0.97583 0.93920 1.22631 0.96235 1.01901 0.95553 1.22742 0.99218 0.97837 0.97285 1.22528 0.99433 0.96863 0.96499 0.90042 0.90542 0.89845 0.89321 0.89831 0.88791 0.89606 0.89539 0.89026 0.89053 0.77042 0.90938 0.91359 0.77855 0.93432 0.91088 0.89925 0.90042 0.92278 0.91429 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.01 0.37 -0.22 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.32 12.07 33.42 0.40 -3.91 16 4 O 0.09 1.00 11.20 17.18 0.19 1.19 16 5 C -0.03 -0.26 7.49 -35.30 -0.26 -0.52 16 6 C -0.08 -0.38 10.30 36.01 0.37 -0.01 16 7 C -0.20 -1.83 5.58 -104.42 -0.58 -2.41 16 8 C -0.03 -0.23 4.83 -27.88 -0.13 -0.37 16 9 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16 10 C 0.51 6.49 7.83 -10.99 -0.09 6.41 16 11 O -0.54 -9.38 15.60 5.56 0.09 -9.29 16 12 N -0.72 -8.69 5.27 -53.38 -0.28 -8.97 16 13 C 0.14 2.21 4.02 -67.49 -0.27 1.94 16 14 H 0.11 2.21 7.50 -51.93 -0.39 1.82 16 15 C -0.18 -3.12 7.68 -25.75 -0.20 -3.32 16 16 C 0.20 3.71 4.36 -67.39 -0.29 3.42 16 17 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16 18 N -0.70 -16.87 4.92 -52.90 -0.26 -17.13 16 19 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.12 -1.84 0.92 -154.61 -0.14 -1.99 16 28 C -0.13 -1.92 7.60 -26.28 -0.20 -2.12 16 29 C -0.13 -1.71 8.08 -25.74 -0.21 -1.92 16 30 C -0.12 -1.34 7.16 -26.28 -0.19 -1.53 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.44 7.44 -51.93 -0.39 0.05 16 37 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16 38 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 3.64 6.98 -40.82 -0.28 3.36 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.39 10.03 7.47 -40.82 -0.30 9.72 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 0.71 6.99 -51.93 -0.36 0.35 16 LS Contribution 417.22 15.07 6.29 6.29 Total: -1.00 -32.91 417.22 -9.09 -42.00 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.39 Total: 11.10 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.83 Total: -11.43 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.59 Total: -56.91 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.28 Total: -8.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.91 -9.09 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.838 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds