Wall clock time and date at job start Wed Apr 1 2020 04:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30171 * 126.80164 * 2 1 4 4 O 1.20925 * 111.59960 * 179.79857 * 3 2 1 5 5 C 1.34038 * 111.57104 * 0.48120 * 4 3 2 6 6 C 1.50699 * 126.78384 * 179.69030 * 5 4 3 7 7 C 1.35456 * 106.44203 * 359.71288 * 5 4 3 8 8 C 1.50698 * 128.00400 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47046 * 269.95163 * 8 7 5 10 10 C 1.50698 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00517 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00225 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00708 * 180.02562 * 12 10 9 14 14 H 1.09003 * 112.88095 * 334.66853 * 13 12 10 15 15 C 1.53953 * 113.66473 * 106.00913 * 13 12 10 16 16 C 1.53941 * 87.29537 * 139.21110 * 15 13 12 17 17 H 1.09003 * 113.66661 * 220.79302 * 16 15 13 18 18 N 1.46496 * 113.66539 * 89.82964 * 16 15 13 19 19 C 1.36940 * 120.00186 * 104.50121 * 18 16 15 20 20 H 1.08005 * 119.99781 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00520 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99395 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00327 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47366 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47310 * 120.00450 * 23 21 19 26 26 H 1.48505 * 109.47049 * 240.00511 * 23 21 19 27 27 C 1.52898 * 113.66575 * 203.31956 * 13 12 10 28 28 C 1.52908 * 121.14120 * 94.90659 * 27 13 12 29 29 C 1.53953 * 86.78617 * 209.37558 * 28 27 13 30 30 C 1.52910 * 121.13876 * 346.34098 * 27 13 12 31 31 H 1.08999 * 109.47015 * 269.69137 * 1 2 3 32 32 H 1.09000 * 109.46646 * 29.68289 * 1 2 3 33 33 H 1.09000 * 109.47248 * 149.69007 * 1 2 3 34 34 H 1.08997 * 109.46938 * 270.02925 * 6 5 4 35 35 H 1.09001 * 109.46719 * 30.02203 * 6 5 4 36 36 H 1.08993 * 109.47513 * 150.02383 * 6 5 4 37 37 H 1.09001 * 109.47779 * 29.95297 * 8 7 5 38 38 H 1.09002 * 109.47107 * 149.95118 * 8 7 5 39 39 H 1.08996 * 109.47214 * 300.00274 * 9 8 7 40 40 H 1.08998 * 109.46764 * 60.00171 * 9 8 7 41 41 H 0.97004 * 119.99310 * 359.97438 * 12 10 9 42 42 H 1.08999 * 113.58078 * 253.81588 * 15 13 12 43 43 H 1.09003 * 113.57855 * 24.60304 * 15 13 12 44 44 H 0.97004 * 120.00402 * 284.50682 * 18 16 15 45 45 H 0.97002 * 119.99967 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.66344 * 323.84863 * 28 27 13 47 47 H 1.08998 * 113.66694 * 94.90225 * 28 27 13 48 48 H 1.08998 * 113.58259 * 270.13489 * 29 28 27 49 49 H 1.09003 * 113.57960 * 139.33587 * 29 28 27 50 50 H 1.08996 * 113.66456 * 265.09517 * 30 27 13 51 51 H 1.08999 * 113.66237 * 36.15358 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7252 0.0040 5 6 3.6025 -0.6069 -0.0033 6 6 4.9021 -1.3698 -0.0079 7 6 2.3539 -1.1321 -0.0062 8 6 1.9590 -2.5864 -0.0136 9 6 1.8245 -3.0710 -1.4586 10 6 1.4302 -4.5254 -1.4660 11 8 1.2719 -5.1162 -0.4187 12 7 1.2535 -5.1698 -2.6365 13 6 0.8697 -6.5836 -2.6438 14 1 1.1734 -7.1099 -1.7388 15 6 -0.6003 -6.8228 -3.0338 16 6 -0.1096 -8.0265 -3.8585 17 1 -0.6062 -8.1274 -4.8235 18 7 -0.0726 -9.2811 -3.1030 19 6 -1.0359 -10.2326 -3.3081 20 1 -1.8226 -10.0582 -4.0273 21 6 -1.0012 -11.4211 -2.5919 22 7 -0.0427 -11.6333 -1.7151 23 14 -2.3147 -12.7193 -2.8723 24 1 -3.2720 -12.2406 -3.9018 25 1 -1.6764 -13.9773 -3.3361 26 1 -3.0406 -12.9717 -1.6016 27 6 1.2438 -7.3144 -3.9336 28 6 2.5488 -8.1033 -4.0455 29 6 2.5199 -7.7708 -5.5484 30 6 1.6635 -6.5438 -5.1859 31 1 -0.3633 -0.0055 1.0276 32 1 -0.3632 0.8928 -0.5089 33 1 -0.3634 -0.8872 -0.5186 34 1 5.2153 -1.5477 -1.0366 35 1 5.6660 -0.7891 0.5092 36 1 4.7651 -2.3241 0.5004 37 1 2.7229 -3.1730 0.4967 38 1 1.0052 -2.7065 0.5002 39 1 1.0606 -2.4844 -1.9689 40 1 2.7783 -2.9508 -1.9723 41 1 1.3798 -4.6972 -3.4741 42 1 -1.2351 -7.1004 -2.1923 43 1 -1.0262 -6.0233 -3.6401 44 1 0.6341 -9.4378 -2.4572 45 1 -0.0187 -12.4637 -1.2143 46 1 3.3829 -7.6470 -3.5125 47 1 2.4375 -9.1661 -3.8304 48 1 1.9900 -8.5104 -6.1486 49 1 3.4974 -7.5148 -5.9572 50 1 0.8449 -6.3607 -5.8818 51 1 2.2488 -5.6492 -4.9733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:02 Heat of formation + Delta-G solvation = 42.381437 kcal Electronic energy + Delta-G solvation = -30524.031409 eV Core-core repulsion = 26427.022426 eV Total energy + Delta-G solvation = -4097.008983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.90878 -41.86452 -40.18355 -36.87382 -36.46734 -35.57506 -34.72778 -34.02521 -32.68075 -31.45060 -29.61474 -28.67034 -26.84788 -26.72795 -25.78468 -25.40055 -23.97979 -22.35896 -21.65570 -21.27773 -20.95531 -19.48062 -18.86421 -18.60977 -18.15815 -17.69161 -17.27094 -16.67358 -16.61481 -16.17906 -15.86955 -15.41773 -15.28500 -15.00151 -14.66419 -14.34761 -14.28129 -14.02670 -13.95449 -13.80109 -13.62734 -13.49889 -13.43805 -13.26637 -13.21234 -13.07657 -12.91461 -12.84330 -12.66697 -12.57165 -12.25004 -12.14944 -11.96620 -11.78164 -11.72927 -11.29226 -11.21346 -10.90830 -10.86182 -10.75293 -10.64625 -10.04472 -9.81627 -9.00279 -7.95390 -5.24101 0.50372 1.19300 1.46363 1.47371 1.57169 1.71742 2.17902 2.34152 2.54319 3.23977 3.36555 3.44176 3.54055 3.58053 3.73145 3.82630 3.88627 3.99270 4.04110 4.05672 4.21262 4.23631 4.33318 4.34726 4.43460 4.57928 4.63108 4.65032 4.66998 4.71811 4.73713 4.83083 4.83772 4.87383 4.91738 4.93373 5.06109 5.09101 5.10558 5.15114 5.16369 5.17892 5.28249 5.34761 5.37293 5.49756 5.54082 5.62970 5.78888 6.26975 6.68764 7.32037 7.32210 7.39055 8.08864 8.30674 9.28167 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.002106 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.016764 B =13291.889676 C =13935.749951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 N -0.400 5.400 4 O 0.082 5.918 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.208 4.208 8 C -0.019 4.019 9 C -0.121 4.121 10 C 0.506 3.494 11 O -0.591 6.591 12 N -0.700 5.700 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.171 4.171 16 C 0.176 3.824 17 H 0.069 0.931 18 N -0.716 5.716 19 C -0.238 4.238 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.297 1.297 27 C -0.111 4.111 28 C -0.134 4.134 29 C -0.126 4.126 30 C -0.094 4.094 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.416 0.584 42 H 0.034 0.966 43 H 0.102 0.898 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.316 24.960 -4.813 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 N -0.109 5.109 4 O 0.020 5.980 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.212 4.212 8 C -0.057 4.057 9 C -0.161 4.161 10 C 0.294 3.706 11 O -0.472 6.472 12 N -0.351 5.351 13 C 0.044 3.956 14 H 0.086 0.914 15 C -0.213 4.213 16 C 0.065 3.935 17 H 0.087 0.913 18 N -0.353 5.353 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.225 1.225 27 C -0.114 4.114 28 C -0.172 4.172 29 C -0.164 4.164 30 C -0.131 4.131 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.254 0.746 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.102 0.898 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.845 25.764 -4.171 27.557 hybrid contribution -0.675 -1.890 0.571 2.086 sum 8.171 23.874 -3.600 25.489 Atomic orbital electron populations 1.20296 0.84656 1.04590 1.04117 1.23926 1.00012 0.88531 1.01693 1.73840 0.89876 1.25000 1.22199 1.84761 1.21352 1.23595 1.68298 1.24905 0.99464 0.83124 1.00977 1.20586 0.88582 0.98551 1.05709 1.20984 0.91817 0.97216 1.11199 1.19484 1.02920 0.87161 0.96163 1.21619 1.05717 0.89900 0.98854 1.21359 0.75705 0.90284 0.83211 1.90738 1.52920 1.70015 1.33478 1.45854 1.69499 1.10752 1.09045 1.21839 0.94986 0.81396 0.97425 0.91441 1.24148 0.96175 1.00454 1.00552 1.20956 0.93961 0.84551 0.94002 0.91326 1.42249 1.31159 1.15102 1.46778 1.19686 1.04260 0.95574 1.17434 0.90288 1.25573 1.01014 1.00702 0.99614 1.69841 1.35936 1.26385 1.29868 0.85081 0.78642 0.78997 0.77097 1.18752 1.22059 1.22481 1.23414 0.95163 0.97464 0.95333 1.22676 0.96859 0.99360 0.98330 1.22695 1.00863 0.98029 0.94785 1.22566 0.99723 0.97134 0.93718 0.89636 0.90048 0.88758 0.87308 0.88541 0.88325 0.90142 0.91000 0.86811 0.86043 0.74592 0.94728 0.87939 0.79546 0.94124 0.89790 0.94266 0.91476 0.89567 0.89752 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.39 71.24 0.74 -0.37 16 2 C 0.02 0.32 7.33 43.58 0.32 0.64 16 3 N -0.40 -9.01 12.07 -49.57 -0.60 -9.61 16 4 O 0.08 1.63 11.20 71.65 0.80 2.43 16 5 C -0.02 -0.32 7.49 25.04 0.19 -0.13 16 6 C -0.08 -0.56 10.30 71.24 0.73 0.17 16 7 C -0.21 -3.49 5.58 -19.74 -0.11 -3.60 16 8 C -0.02 -0.32 4.83 29.85 0.14 -0.17 16 9 C -0.12 -1.67 5.68 29.85 0.17 -1.50 16 10 C 0.51 12.02 7.83 87.66 0.69 12.71 16 11 O -0.59 -20.84 15.60 -3.03 -0.05 -20.89 16 12 N -0.70 -15.10 5.27 -441.17 -2.33 -17.43 16 13 C 0.15 4.67 4.02 45.28 0.18 4.85 16 14 H 0.07 2.79 7.50 -2.39 -0.02 2.77 16 15 C -0.17 -5.82 7.68 31.23 0.24 -5.58 16 16 C 0.18 6.65 4.36 45.34 0.20 6.85 16 17 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 18 N -0.72 -35.90 4.92 -321.26 -1.58 -37.48 16 19 C -0.24 -13.14 9.98 84.03 0.84 -12.30 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 23 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 C -0.11 -3.21 0.92 -52.25 -0.05 -3.26 16 28 C -0.13 -4.04 7.60 30.89 0.23 -3.81 16 29 C -0.13 -2.88 8.08 31.23 0.25 -2.62 16 30 C -0.09 -1.77 7.16 30.89 0.22 -1.54 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.67 7.44 -2.39 -0.02 0.66 16 37 H 0.08 1.44 7.40 -2.39 -0.02 1.42 16 38 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 5.59 6.98 -92.71 -0.65 4.94 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.37 20.58 7.47 -92.71 -0.69 19.89 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.04 1.52 7.51 -2.39 -0.02 1.50 16 48 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.11 1.37 6.99 -2.39 -0.02 1.36 16 Total: -1.00 -77.57 417.22 3.63 -73.95 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.39 Total: 34.17 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 5.46 Total: -13.65 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.22 Total: -124.53 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.75 Total: -18.46 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -77.57 3.63 -73.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.329 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds