Wall clock time and date at job start Wed Apr 1 2020 04:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30176 * 126.80017 * 2 1 4 4 O 1.20926 * 111.60451 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56463 * 359.76280 * 4 3 2 6 6 C 1.50703 * 126.77300 * 180.28570 * 5 4 3 7 7 C 1.35441 * 106.44786 * 0.38033 * 5 4 3 8 8 C 1.50706 * 128.00901 * 179.91398 * 7 5 4 9 9 C 1.53000 * 109.47116 * 269.67807 * 8 7 5 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88448 * 25.33616 * 13 12 10 15 15 C 1.53946 * 113.66734 * 253.98713 * 13 12 10 16 16 C 1.53946 * 87.29660 * 270.26678 * 15 13 12 17 17 H 1.09003 * 113.66565 * 89.82505 * 16 15 13 18 18 N 1.46499 * 113.66444 * 220.79034 * 16 15 13 19 19 C 1.36936 * 120.00103 * 255.49772 * 18 16 15 20 20 H 1.08000 * 119.99945 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00035 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99837 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99924 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46819 * 89.99999 * 23 21 19 25 25 H 1.48502 * 109.47035 * 209.99718 * 23 21 19 26 26 H 1.48496 * 109.47099 * 330.00196 * 23 21 19 27 27 C 1.52910 * 113.66011 * 156.67939 * 13 12 10 28 28 C 1.52913 * 121.14243 * 323.85241 * 27 13 12 29 29 C 1.53955 * 86.78450 * 209.37761 * 28 27 13 30 30 C 1.52911 * 121.13931 * 215.29141 * 27 13 12 31 31 H 1.09003 * 109.46817 * 269.97347 * 1 2 3 32 32 H 1.08993 * 109.47674 * 29.97458 * 1 2 3 33 33 H 1.09005 * 109.46767 * 149.97497 * 1 2 3 34 34 H 1.09002 * 109.47550 * 270.10792 * 6 5 4 35 35 H 1.08995 * 109.47244 * 30.11495 * 6 5 4 36 36 H 1.09006 * 109.46761 * 150.10930 * 6 5 4 37 37 H 1.09000 * 109.46646 * 29.67220 * 8 7 5 38 38 H 1.09000 * 109.47248 * 149.67938 * 8 7 5 39 39 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 40 40 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 41 41 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 42 42 H 1.09007 * 113.57833 * 24.86916 * 15 13 12 43 43 H 1.08993 * 113.58119 * 155.66066 * 15 13 12 44 44 H 0.97003 * 120.00089 * 75.49213 * 18 16 15 45 45 H 0.97003 * 119.99608 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.66035 * 323.85180 * 28 27 13 47 47 H 1.09001 * 113.65967 * 94.90377 * 28 27 13 48 48 H 1.08996 * 113.57852 * 270.13430 * 29 28 27 49 49 H 1.08995 * 113.64768 * 139.34805 * 29 28 27 50 50 H 1.09003 * 113.65853 * 265.10112 * 30 27 13 51 51 H 1.08998 * 113.66155 * 36.05559 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9022 -1.3694 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8243 -3.0788 -1.4424 10 6 1.4300 -4.5332 -1.4419 11 8 1.2719 -5.1183 -0.3913 12 7 1.2520 -5.1836 -2.6089 13 6 0.8693 -6.5977 -2.6084 14 1 0.3452 -6.8946 -1.6999 15 6 2.0154 -7.5483 -2.9993 16 6 1.5538 -7.3869 -4.4590 17 1 2.0322 -6.5576 -4.9800 18 7 1.5831 -8.6346 -5.2263 19 6 2.5780 -8.8523 -6.1416 20 1 3.3409 -8.1040 -6.2982 21 6 2.6061 -10.0347 -6.8683 22 7 1.6766 -10.9468 -6.6771 23 14 3.9629 -10.3313 -8.1175 24 1 5.1089 -11.0028 -7.4533 25 1 3.4490 -11.1950 -9.2108 26 1 4.4094 -9.0321 -8.6812 27 6 0.1716 -7.0451 -3.8934 28 6 -0.7828 -6.1130 -4.6408 29 6 -1.5150 -7.3826 -5.1123 30 6 -0.9501 -8.0839 -3.8637 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5143 34 1 5.2203 -1.5549 -1.0147 35 1 5.6636 -0.7850 0.5276 36 1 4.7628 -2.3202 0.5259 37 1 2.7233 -3.1701 0.5131 38 1 1.0055 -2.7038 0.5145 39 1 1.0602 -2.4950 -1.9557 40 1 2.7779 -2.9613 -1.9571 41 1 1.3781 -4.7155 -3.4491 42 1 3.0068 -7.1378 -2.8075 43 1 1.8937 -8.5601 -2.6128 44 1 0.8977 -9.3065 -5.0859 45 1 1.6965 -11.7732 -7.1846 46 1 -1.3810 -5.4813 -3.9841 47 1 -0.3075 -5.5566 -5.4486 48 1 -1.1308 -7.7848 -6.0496 49 1 -2.6009 -7.2888 -5.1058 50 1 -0.6084 -9.1020 -4.0507 51 1 -1.5943 -8.0072 -2.9878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:07 Heat of formation + Delta-G solvation = 62.887908 kcal Electronic energy + Delta-G solvation = -30501.317720 eV Core-core repulsion = 26405.197965 eV Total energy + Delta-G solvation = -4096.119756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.19357 -40.65244 -39.12463 -36.17023 -35.03862 -34.08904 -34.05614 -32.50971 -31.76896 -29.86400 -28.98851 -28.07168 -25.76035 -25.43691 -24.40185 -24.15065 -22.26858 -21.61921 -20.70557 -20.33002 -19.97500 -18.05935 -17.89380 -17.45245 -17.10484 -16.72766 -16.01445 -15.70994 -15.18807 -14.88238 -14.65954 -14.43603 -14.10649 -13.87428 -13.80313 -13.50736 -13.49050 -13.18558 -13.11465 -12.92920 -12.63553 -12.59982 -12.45995 -12.29331 -12.04097 -11.79700 -11.73167 -11.56950 -11.37494 -11.06490 -10.92062 -10.84345 -10.64427 -10.20225 -10.18180 -10.14009 -9.89544 -9.84443 -9.65591 -9.44013 -9.35345 -8.88126 -8.71131 -7.00430 -5.83232 -3.11782 1.16498 1.88674 2.63439 2.81143 3.19668 3.39131 3.44548 3.46073 3.88719 4.13723 4.45090 4.53346 4.56223 4.70109 4.75645 4.88371 4.91571 4.99042 5.02574 5.05078 5.07058 5.15364 5.18687 5.24233 5.25194 5.27168 5.37312 5.42169 5.44658 5.59571 5.66492 5.70618 5.76548 5.81722 5.92216 5.95790 5.97254 6.02801 6.07988 6.16058 6.27384 6.39043 6.47867 6.54423 6.62816 6.84950 6.90074 7.03942 7.58861 7.64448 8.00557 8.26373 8.35588 9.47185 10.04522 10.39188 11.38971 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.002171 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.289543 B =12895.071217 C =13980.344778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.199 4.199 8 C -0.024 4.024 9 C -0.136 4.136 10 C 0.513 3.487 11 O -0.545 6.545 12 N -0.703 5.703 13 C 0.129 3.871 14 H 0.094 0.906 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.074 0.926 18 N -0.709 5.709 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.132 4.132 30 C -0.110 4.110 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.400 0.600 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.079 0.921 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 19.845 12.375 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.203 4.203 8 C -0.062 4.062 9 C -0.176 4.176 10 C 0.300 3.700 11 O -0.422 6.422 12 N -0.353 5.353 13 C 0.024 3.976 14 H 0.112 0.888 15 C -0.216 4.216 16 C 0.079 3.921 17 H 0.091 0.909 18 N -0.348 5.348 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.122 4.122 28 C -0.163 4.163 29 C -0.169 4.169 30 C -0.148 4.148 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.234 0.766 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.664 20.713 12.961 24.490 hybrid contribution 0.561 -0.983 -1.085 1.568 sum -1.103 19.730 11.876 23.055 Atomic orbital electron populations 1.20186 0.85969 1.03837 1.03493 1.23485 0.98941 0.88499 1.02615 1.73846 0.89321 1.23999 1.20358 1.84802 1.21618 1.22597 1.67948 1.24307 0.98334 0.83750 1.02778 1.20389 0.89955 0.98719 1.04330 1.20990 0.91573 0.97557 1.10196 1.19590 1.03666 0.87253 0.95680 1.21643 1.03952 0.93126 0.98918 1.20544 0.76901 0.88735 0.83858 1.90702 1.51171 1.69108 1.31229 1.45643 1.69703 1.11599 1.08314 1.21713 0.97593 0.79875 0.98465 0.88796 1.24259 0.97124 0.98979 1.01262 1.21331 0.90434 0.90594 0.89704 0.90854 1.42400 1.31712 1.16111 1.44545 1.19259 1.03817 1.01092 1.13323 0.91219 1.24746 0.98679 0.96938 1.00373 1.69654 1.34973 1.08720 1.44511 0.86210 0.81441 0.77625 0.81007 1.21709 1.21781 1.20789 1.23583 0.95633 0.97788 0.95226 1.22640 0.98049 0.96333 0.99297 1.22743 0.98594 0.96533 0.99024 1.22458 0.95634 0.98969 0.97783 0.90113 0.90523 0.89885 0.89193 0.89816 0.88800 0.89631 0.89650 0.88871 0.88762 0.76573 0.92375 0.89637 0.77686 0.93434 0.90966 0.91753 0.89210 0.92464 0.90269 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.17 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 N -0.37 -4.24 12.07 33.42 0.40 -3.83 16 4 O 0.09 0.99 11.20 17.17 0.19 1.18 16 5 C -0.03 -0.24 7.49 -35.30 -0.26 -0.50 16 6 C -0.08 -0.39 10.30 36.01 0.37 -0.02 16 7 C -0.20 -1.77 5.58 -104.42 -0.58 -2.35 16 8 C -0.02 -0.20 4.83 -27.88 -0.13 -0.34 16 9 C -0.14 -1.10 5.68 -27.89 -0.16 -1.26 16 10 C 0.51 6.03 7.83 -10.98 -0.09 5.95 16 11 O -0.54 -8.46 15.60 5.56 0.09 -8.37 16 12 N -0.70 -8.23 5.06 -53.37 -0.27 -8.50 16 13 C 0.13 1.87 4.09 -67.49 -0.28 1.59 16 14 H 0.09 1.48 7.50 -51.93 -0.39 1.09 16 15 C -0.17 -2.97 7.68 -25.75 -0.20 -3.16 16 16 C 0.19 3.51 4.28 -67.33 -0.29 3.22 16 17 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 18 N -0.71 -16.62 5.36 -52.84 -0.28 -16.90 16 19 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 23 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.12 -1.81 0.92 -154.55 -0.14 -1.95 16 28 C -0.13 -1.67 7.46 -26.28 -0.20 -1.87 16 29 C -0.13 -1.95 8.08 -25.75 -0.21 -2.15 16 30 C -0.11 -1.70 7.46 -26.28 -0.20 -1.90 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.42 7.44 -51.93 -0.39 0.04 16 37 H 0.09 0.74 7.40 -51.93 -0.38 0.36 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.40 3.91 8.58 -40.82 -0.35 3.56 16 42 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.39 9.65 5.87 -40.82 -0.24 9.41 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.41 6.43 -51.93 -0.33 1.08 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 417.66 15.07 6.29 6.29 Total: -1.00 -32.19 417.66 -9.10 -41.29 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.39 Total: 10.81 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.83 Total: -12.29 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.57 Total: -55.65 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.28 Total: -7.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.19 -9.10 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.182 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds