Wall clock time and date at job start Wed Apr 1 2020 04:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30176 * 126.80017 * 2 1 4 4 O 1.20926 * 111.60451 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56463 * 359.76280 * 4 3 2 6 6 C 1.50703 * 126.77300 * 180.28570 * 5 4 3 7 7 C 1.35441 * 106.44786 * 0.38033 * 5 4 3 8 8 C 1.50706 * 128.00901 * 179.91398 * 7 5 4 9 9 C 1.53000 * 109.47116 * 269.67807 * 8 7 5 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88448 * 25.33616 * 13 12 10 15 15 C 1.53946 * 113.66734 * 253.98713 * 13 12 10 16 16 C 1.53946 * 87.29660 * 270.26678 * 15 13 12 17 17 H 1.09003 * 113.66565 * 89.82505 * 16 15 13 18 18 N 1.46499 * 113.66444 * 220.79034 * 16 15 13 19 19 C 1.36936 * 120.00103 * 255.49772 * 18 16 15 20 20 H 1.08000 * 119.99945 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00035 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99837 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99924 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46819 * 89.99999 * 23 21 19 25 25 H 1.48502 * 109.47035 * 209.99718 * 23 21 19 26 26 H 1.48496 * 109.47099 * 330.00196 * 23 21 19 27 27 C 1.52910 * 113.66011 * 156.67939 * 13 12 10 28 28 C 1.52913 * 121.14243 * 323.85241 * 27 13 12 29 29 C 1.53955 * 86.78450 * 209.37761 * 28 27 13 30 30 C 1.52911 * 121.13931 * 215.29141 * 27 13 12 31 31 H 1.09003 * 109.46817 * 269.97347 * 1 2 3 32 32 H 1.08993 * 109.47674 * 29.97458 * 1 2 3 33 33 H 1.09005 * 109.46767 * 149.97497 * 1 2 3 34 34 H 1.09002 * 109.47550 * 270.10792 * 6 5 4 35 35 H 1.08995 * 109.47244 * 30.11495 * 6 5 4 36 36 H 1.09006 * 109.46761 * 150.10930 * 6 5 4 37 37 H 1.09000 * 109.46646 * 29.67220 * 8 7 5 38 38 H 1.09000 * 109.47248 * 149.67938 * 8 7 5 39 39 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 40 40 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 41 41 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 42 42 H 1.09007 * 113.57833 * 24.86916 * 15 13 12 43 43 H 1.08993 * 113.58119 * 155.66066 * 15 13 12 44 44 H 0.97003 * 120.00089 * 75.49213 * 18 16 15 45 45 H 0.97003 * 119.99608 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.66035 * 323.85180 * 28 27 13 47 47 H 1.09001 * 113.65967 * 94.90377 * 28 27 13 48 48 H 1.08996 * 113.57852 * 270.13430 * 29 28 27 49 49 H 1.08995 * 113.64768 * 139.34805 * 29 28 27 50 50 H 1.09003 * 113.65853 * 265.10112 * 30 27 13 51 51 H 1.08998 * 113.66155 * 36.05559 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9022 -1.3694 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8243 -3.0788 -1.4424 10 6 1.4300 -4.5332 -1.4419 11 8 1.2719 -5.1183 -0.3913 12 7 1.2520 -5.1836 -2.6089 13 6 0.8693 -6.5977 -2.6084 14 1 0.3452 -6.8946 -1.6999 15 6 2.0154 -7.5483 -2.9993 16 6 1.5538 -7.3869 -4.4590 17 1 2.0322 -6.5576 -4.9800 18 7 1.5831 -8.6346 -5.2263 19 6 2.5780 -8.8523 -6.1416 20 1 3.3409 -8.1040 -6.2982 21 6 2.6061 -10.0347 -6.8683 22 7 1.6766 -10.9468 -6.6771 23 14 3.9629 -10.3313 -8.1175 24 1 5.1089 -11.0028 -7.4533 25 1 3.4490 -11.1950 -9.2108 26 1 4.4094 -9.0321 -8.6812 27 6 0.1716 -7.0451 -3.8934 28 6 -0.7828 -6.1130 -4.6408 29 6 -1.5150 -7.3826 -5.1123 30 6 -0.9501 -8.0839 -3.8637 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5143 34 1 5.2203 -1.5549 -1.0147 35 1 5.6636 -0.7850 0.5276 36 1 4.7628 -2.3202 0.5259 37 1 2.7233 -3.1701 0.5131 38 1 1.0055 -2.7038 0.5145 39 1 1.0602 -2.4950 -1.9557 40 1 2.7779 -2.9613 -1.9571 41 1 1.3781 -4.7155 -3.4491 42 1 3.0068 -7.1378 -2.8075 43 1 1.8937 -8.5601 -2.6128 44 1 0.8977 -9.3065 -5.0859 45 1 1.6965 -11.7732 -7.1846 46 1 -1.3810 -5.4813 -3.9841 47 1 -0.3075 -5.5566 -5.4486 48 1 -1.1308 -7.7848 -6.0496 49 1 -2.6009 -7.2888 -5.1058 50 1 -0.6084 -9.1020 -4.0507 51 1 -1.5943 -8.0072 -2.9878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:06 Heat of formation + Delta-G solvation = 43.914336 kcal Electronic energy + Delta-G solvation = -30502.140476 eV Core-core repulsion = 26405.197965 eV Total energy + Delta-G solvation = -4096.942512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.89234 -41.87882 -40.17393 -36.87375 -36.31402 -35.71375 -34.71251 -33.80997 -32.66436 -31.55816 -29.59362 -28.64438 -26.86892 -26.63515 -25.89151 -25.42968 -23.70158 -22.49260 -21.70995 -21.11113 -20.94034 -19.58867 -18.84392 -18.58431 -18.16678 -17.63072 -17.15915 -16.69182 -16.54353 -16.32253 -15.75940 -15.47446 -15.26527 -15.01075 -14.75307 -14.29243 -14.18150 -14.01639 -13.92253 -13.73345 -13.67283 -13.48200 -13.32905 -13.27910 -13.18945 -13.13974 -12.90704 -12.84471 -12.76243 -12.45309 -12.22773 -12.14796 -11.89671 -11.84298 -11.70861 -11.27101 -11.17698 -10.88865 -10.86517 -10.72285 -10.65508 -10.04064 -9.85014 -8.93334 -7.92181 -5.19295 0.51193 1.21081 1.48393 1.49278 1.57321 1.71176 2.15832 2.29287 2.57732 3.25894 3.39142 3.51697 3.55170 3.66941 3.77197 3.81210 3.90849 3.96627 4.04056 4.07072 4.16414 4.28228 4.32847 4.36230 4.44609 4.59217 4.63868 4.66317 4.69841 4.71172 4.74709 4.78109 4.85539 4.89223 4.92602 4.93987 5.05982 5.07817 5.11839 5.12395 5.15850 5.19196 5.21896 5.31475 5.38881 5.51524 5.61774 5.65909 5.74457 6.30063 6.66274 7.33050 7.34580 7.37108 8.15176 8.37603 9.30991 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.002171 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.289543 B =12895.071217 C =13980.344778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.402 5.402 4 O 0.079 5.921 5 C -0.024 4.024 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.017 4.017 9 C -0.126 4.126 10 C 0.516 3.484 11 O -0.583 6.583 12 N -0.696 5.696 13 C 0.151 3.849 14 H 0.086 0.914 15 C -0.173 4.173 16 C 0.178 3.822 17 H 0.081 0.919 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.968 3.032 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.268 1.268 27 C -0.111 4.111 28 C -0.107 4.107 29 C -0.132 4.132 30 C -0.114 4.114 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.413 0.587 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.376 0.624 45 H 0.249 0.751 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.045 0.955 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 22.070 12.488 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.111 5.111 4 O 0.017 5.983 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.055 4.055 9 C -0.165 4.165 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.346 5.346 13 C 0.044 3.956 14 H 0.104 0.896 15 C -0.215 4.215 16 C 0.068 3.932 17 H 0.099 0.901 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.226 1.226 26 H -0.193 1.193 27 C -0.114 4.114 28 C -0.144 4.144 29 C -0.170 4.170 30 C -0.152 4.152 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.250 0.750 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.210 0.790 45 H 0.058 0.942 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.489 23.014 13.080 26.513 hybrid contribution 0.533 -1.650 -1.028 2.015 sum -0.956 21.365 12.052 24.548 Atomic orbital electron populations 1.20307 0.84429 1.04646 1.04217 1.23971 1.00114 0.88461 1.01539 1.73844 0.89872 1.25153 1.22256 1.84765 1.21431 1.23652 1.68411 1.24905 0.99552 0.83150 1.01095 1.20578 0.88715 0.98676 1.05515 1.21028 0.91644 0.97451 1.11061 1.19496 1.03240 0.86855 0.95891 1.21630 1.05523 0.90264 0.99097 1.21150 0.75606 0.89907 0.82915 1.90699 1.52768 1.70252 1.32604 1.45547 1.69501 1.10262 1.09261 1.21319 0.95608 0.81058 0.97613 0.89554 1.24110 0.98314 0.98810 1.00256 1.21639 0.93200 0.88813 0.89537 0.90119 1.42571 1.30895 1.17736 1.44811 1.19664 1.03924 1.00718 1.12683 0.90524 1.25501 1.01097 0.97254 1.02914 1.69812 1.37049 1.09103 1.45973 0.85217 0.78732 0.77703 0.78581 1.21871 1.22572 1.19252 1.23343 0.94350 0.98509 0.95157 1.22604 0.96954 0.95606 0.99285 1.22660 1.00048 0.97240 0.97010 1.22515 0.96307 0.97259 0.99137 0.89401 0.90272 0.88476 0.87736 0.88623 0.88065 0.90000 0.90267 0.86765 0.86810 0.75034 0.92285 0.91841 0.78958 0.94203 0.88226 0.91118 0.92597 0.90232 0.93584 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.39 71.24 0.74 -0.22 16 2 C 0.02 0.32 7.33 43.58 0.32 0.64 16 3 N -0.40 -8.92 12.07 -49.54 -0.60 -9.52 16 4 O 0.08 1.58 11.20 71.60 0.80 2.38 16 5 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16 6 C -0.08 -0.60 10.30 71.24 0.73 0.13 16 7 C -0.21 -3.27 5.58 -19.73 -0.11 -3.38 16 8 C -0.02 -0.24 4.83 29.85 0.14 -0.10 16 9 C -0.13 -1.59 5.68 29.85 0.17 -1.42 16 10 C 0.52 10.65 7.83 87.65 0.69 11.34 16 11 O -0.58 -17.04 15.60 -3.03 -0.05 -17.08 16 12 N -0.70 -14.17 5.06 -441.16 -2.23 -16.41 16 13 C 0.15 4.10 4.09 45.28 0.19 4.28 16 14 H 0.09 2.58 7.50 -2.39 -0.02 2.56 16 15 C -0.17 -5.82 7.68 31.23 0.24 -5.58 16 16 C 0.18 6.40 4.28 45.38 0.19 6.60 16 17 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 18 N -0.72 -34.42 5.36 -321.10 -1.72 -36.14 16 19 C -0.24 -12.66 9.98 84.03 0.84 -11.82 16 20 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 21 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 22 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 23 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.11 -3.19 0.92 -52.21 -0.05 -3.24 16 28 C -0.11 -2.53 7.46 30.89 0.23 -2.30 16 29 C -0.13 -3.74 8.08 31.23 0.25 -3.49 16 30 C -0.11 -3.45 7.46 30.89 0.23 -3.22 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.66 7.44 -2.38 -0.02 0.65 16 37 H 0.08 1.26 7.40 -2.39 -0.02 1.24 16 38 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.41 6.49 8.58 -92.71 -0.80 5.69 16 42 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.38 19.50 5.87 -92.71 -0.54 18.96 16 45 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.05 1.71 6.43 -2.39 -0.02 1.69 16 51 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.66 417.66 3.58 -68.07 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.39 Total: 35.09 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.46 Total: -15.70 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -4.27 Total: -119.98 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.75 Total: -14.70 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.66 3.58 -68.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.986 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds