Wall clock time and date at job start Wed Apr 1 2020 04:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30176 * 126.80672 * 2 1 4 4 O 1.20924 * 111.60843 * 180.24981 * 3 2 1 5 5 C 1.34043 * 111.56251 * 359.75417 * 4 3 2 6 6 C 1.50698 * 126.77333 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44904 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00516 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47522 * 89.99801 * 8 7 5 10 10 C 1.50698 * 109.47004 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.08999 * 112.88754 * 23.93309 * 13 12 10 15 15 C 1.53957 * 113.66372 * 252.46373 * 13 12 10 16 16 C 1.53947 * 87.29654 * 220.79461 * 15 13 12 17 17 H 1.09000 * 113.66476 * 270.25832 * 16 15 13 18 18 N 1.46501 * 113.74661 * 139.21354 * 16 15 13 19 19 C 1.36941 * 119.99483 * 107.77215 * 18 16 15 20 20 H 1.07997 * 120.00677 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99419 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00394 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99641 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47001 * 120.00066 * 23 21 19 26 26 H 1.48504 * 109.46981 * 239.99893 * 23 21 19 27 27 C 1.52908 * 113.66357 * 155.27989 * 13 12 10 28 28 C 1.52908 * 121.13642 * 13.64835 * 27 13 12 29 29 C 1.53946 * 86.78542 * 209.38235 * 28 27 13 30 30 C 1.52910 * 121.13509 * 265.09062 * 27 13 12 31 31 H 1.08995 * 109.47101 * 270.16164 * 1 2 3 32 32 H 1.09007 * 109.46936 * 30.16186 * 1 2 3 33 33 H 1.09000 * 109.47170 * 150.15701 * 1 2 3 34 34 H 1.09001 * 109.47267 * 269.99595 * 6 5 4 35 35 H 1.08994 * 109.47380 * 29.99427 * 6 5 4 36 36 H 1.09002 * 109.46986 * 149.99814 * 6 5 4 37 37 H 1.09000 * 109.47047 * 329.99106 * 8 7 5 38 38 H 1.09007 * 109.46879 * 210.00118 * 8 7 5 39 39 H 1.09003 * 109.46690 * 59.99942 * 9 8 7 40 40 H 1.08993 * 109.46773 * 300.00278 * 9 8 7 41 41 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 42 42 H 1.09000 * 113.57648 * 335.40139 * 15 13 12 43 43 H 1.08999 * 113.57776 * 106.19339 * 15 13 12 44 44 H 0.96998 * 120.00214 * 287.77608 * 18 16 15 45 45 H 0.97001 * 119.99746 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.66478 * 323.85928 * 28 27 13 47 47 H 1.09008 * 113.65934 * 94.91137 * 28 27 13 48 48 H 1.08996 * 113.58314 * 270.13495 * 29 28 27 49 49 H 1.08999 * 113.65166 * 139.34935 * 29 28 27 50 50 H 1.09004 * 113.66092 * 265.08702 * 30 27 13 51 51 H 1.08994 * 113.66382 * 36.05415 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0036 6 6 4.9021 -1.3697 -0.0089 7 6 2.3539 -1.1321 0.0036 8 6 1.9590 -2.5864 0.0074 9 6 1.8329 -3.0770 1.4511 10 6 1.4374 -4.5312 1.4547 11 8 1.2731 -5.1176 0.4059 12 7 1.2674 -5.1803 2.6236 13 6 0.8771 -6.5923 2.6272 14 1 1.1493 -7.1097 1.7072 15 6 -0.5801 -6.8295 3.0640 16 6 -0.0676 -8.0452 3.8574 17 1 -0.0623 -8.9717 3.2832 18 7 -0.6904 -8.1950 5.1749 19 6 -1.5934 -9.2007 5.3950 20 1 -1.8467 -9.8832 4.5973 21 6 -2.1839 -9.3423 6.6432 22 7 -1.8764 -8.5096 7.6151 23 14 -3.4151 -10.7146 6.9437 24 1 -3.5868 -11.5068 5.6995 25 1 -2.9169 -11.5978 8.0287 26 1 -4.7208 -10.1298 7.3417 27 6 1.2884 -7.3395 3.8963 28 6 1.7516 -6.5850 5.1430 29 6 2.6131 -7.8198 5.4642 30 6 2.5925 -8.1355 3.9575 31 1 -0.3633 0.0029 1.0276 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5114 34 1 5.2102 -1.5553 -1.0379 35 1 5.6685 -0.7853 0.5000 36 1 4.7675 -2.3203 0.5071 37 1 2.7199 -3.1709 -0.5099 38 1 1.0022 -2.7044 -0.5014 39 1 1.0719 -2.4926 1.9682 40 1 2.7897 -2.9590 1.9597 41 1 1.3992 -4.7114 3.4624 42 1 -0.9812 -6.0354 3.6937 43 1 -1.2442 -7.0943 2.2413 44 1 -0.4633 -7.5817 5.8913 45 1 -2.2888 -8.6088 8.4874 46 1 2.3341 -5.6907 4.9219 47 1 0.9564 -6.4061 5.8667 48 1 2.0990 -8.5638 6.0726 49 1 3.6045 -7.5742 5.8448 50 1 2.4691 -9.1953 3.7343 51 1 3.4109 -7.6778 3.4020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:10 Heat of formation + Delta-G solvation = 62.112570 kcal Electronic energy + Delta-G solvation = -30471.139381 eV Core-core repulsion = 26374.986004 eV Total energy + Delta-G solvation = -4096.153377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.19335 -40.63815 -39.12721 -36.15817 -34.88348 -34.14021 -34.07666 -32.62626 -31.84696 -29.89005 -28.96435 -28.11195 -25.78471 -25.52659 -24.26888 -24.15890 -22.28441 -21.43087 -20.50006 -20.40809 -20.14393 -18.08110 -17.89920 -17.45917 -17.09639 -16.67957 -16.16573 -15.80580 -15.05277 -14.91192 -14.56528 -14.55622 -14.21563 -13.87655 -13.79487 -13.47734 -13.30720 -13.14801 -13.02152 -12.98309 -12.69604 -12.58975 -12.49534 -12.29481 -12.10301 -11.87331 -11.59367 -11.53332 -11.25633 -11.06004 -10.94652 -10.82672 -10.74067 -10.20799 -10.15067 -10.06855 -9.99030 -9.90579 -9.66748 -9.49352 -9.33689 -8.89312 -8.67138 -7.01071 -5.83944 -3.12222 1.15996 1.89715 2.64701 2.80970 3.26866 3.39346 3.46128 3.47583 3.90359 4.14472 4.45286 4.53162 4.57305 4.70554 4.77119 4.87338 4.91445 4.93159 4.99903 5.02103 5.07434 5.19436 5.20272 5.22175 5.23322 5.28296 5.37996 5.41909 5.45559 5.59330 5.65620 5.71582 5.76128 5.86582 5.88087 5.94729 5.96937 5.97904 6.03664 6.19131 6.30214 6.36979 6.48858 6.56057 6.59069 6.83297 6.89692 7.03600 7.61526 7.66510 8.01100 8.27185 8.34986 9.46851 10.03238 10.38119 11.38388 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.002039 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.317502 B =13729.607057 C =14388.550586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.031 4.031 6 C -0.075 4.075 7 C -0.198 4.198 8 C -0.024 4.024 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.711 5.711 13 C 0.130 3.870 14 H 0.110 0.890 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.081 0.919 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.130 4.130 30 C -0.126 4.126 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.515 14.531 -13.345 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.062 4.062 9 C -0.178 4.178 10 C 0.298 3.702 11 O -0.424 6.424 12 N -0.361 5.361 13 C 0.025 3.975 14 H 0.127 0.873 15 C -0.216 4.216 16 C 0.079 3.921 17 H 0.099 0.901 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.122 4.122 28 C -0.154 4.154 29 C -0.167 4.167 30 C -0.163 4.163 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.234 0.766 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.048 15.254 -14.055 24.504 hybrid contribution -0.713 -0.907 0.950 1.495 sum 12.335 14.346 -13.105 23.015 Atomic orbital electron populations 1.20202 0.85905 1.03890 1.03600 1.23495 0.98987 0.88480 1.02502 1.73849 0.89295 1.23989 1.20379 1.84799 1.21653 1.22560 1.67922 1.24294 0.98282 0.83798 1.03035 1.20363 0.90013 0.98658 1.04227 1.21000 0.91565 0.97590 1.10047 1.19589 1.03677 0.87242 0.95690 1.21652 1.03809 0.93418 0.98879 1.20565 0.76862 0.88796 0.84026 1.90695 1.51387 1.68896 1.31442 1.46022 1.69525 1.12351 1.08196 1.22291 0.96557 0.80042 0.98597 0.87258 1.24269 0.94863 1.01942 1.00567 1.21059 0.88262 0.94242 0.88523 0.90094 1.42352 1.48756 1.35749 1.07574 1.19345 1.15798 1.06240 0.95931 0.91005 1.24742 1.00681 0.99237 0.96134 1.69659 1.46835 1.38759 1.02752 0.86132 0.80955 0.81494 0.77696 1.20506 1.21874 1.21890 1.23608 0.96693 0.97777 0.94121 1.22423 0.99512 0.96507 0.96966 1.22724 0.99011 0.98581 0.96406 1.22699 0.96683 1.00106 0.96856 0.89993 0.90558 0.89791 0.89325 0.89763 0.88941 0.89696 0.89584 0.88812 0.88986 0.76593 0.90241 0.92167 0.77789 0.93514 0.91200 0.90332 0.89133 0.92567 0.91516 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.00 0.37 -0.23 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.30 12.07 33.43 0.40 -3.90 16 4 O 0.10 1.00 11.20 17.17 0.19 1.19 16 5 C -0.03 -0.25 7.49 -35.30 -0.26 -0.52 16 6 C -0.08 -0.35 10.25 36.00 0.37 0.02 16 7 C -0.20 -1.78 5.58 -104.42 -0.58 -2.36 16 8 C -0.02 -0.20 4.75 -27.88 -0.13 -0.34 16 9 C -0.14 -1.13 5.68 -27.88 -0.16 -1.29 16 10 C 0.51 6.07 7.83 -10.99 -0.09 5.99 16 11 O -0.55 -8.48 15.58 5.55 0.09 -8.40 16 12 N -0.71 -8.41 5.25 -53.37 -0.28 -8.69 16 13 C 0.13 1.87 4.12 -67.48 -0.28 1.59 16 14 H 0.11 1.68 7.47 -51.93 -0.39 1.29 16 15 C -0.17 -2.94 7.69 -25.75 -0.20 -3.14 16 16 C 0.19 3.59 4.36 -67.48 -0.29 3.29 16 17 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 18 N -0.71 -16.48 5.33 -52.99 -0.28 -16.76 16 19 C -0.24 -6.42 9.97 -15.06 -0.15 -6.57 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C -0.12 -1.79 1.06 -154.71 -0.16 -1.95 16 28 C -0.12 -1.66 6.77 -26.29 -0.18 -1.84 16 29 C -0.13 -1.89 8.08 -25.75 -0.21 -2.10 16 30 C -0.13 -1.75 7.84 -26.28 -0.21 -1.95 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.56 7.65 -51.93 -0.40 0.17 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.36 8.05 -51.93 -0.42 -0.06 16 37 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 38 H 0.09 0.81 7.61 -51.93 -0.40 0.41 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.40 4.01 7.04 -40.82 -0.29 3.73 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.39 9.49 5.92 -40.82 -0.24 9.25 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.07 0.81 7.03 -51.93 -0.36 0.44 16 47 H 0.08 1.32 6.42 -51.92 -0.33 0.99 16 48 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 415.21 15.07 6.26 6.26 Total: -1.00 -31.99 415.21 -9.06 -41.05 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.28 Total: 10.94 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.86 Total: -12.19 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.57 Total: -55.67 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.28 Total: -7.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.99 -9.06 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.158 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds