Wall clock time and date at job start Wed Apr 1 2020 04:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30176 * 126.80672 * 2 1 4 4 O 1.20924 * 111.60843 * 180.24981 * 3 2 1 5 5 C 1.34043 * 111.56251 * 359.75417 * 4 3 2 6 6 C 1.50698 * 126.77333 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44904 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00516 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47522 * 89.99801 * 8 7 5 10 10 C 1.50698 * 109.47004 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.08999 * 112.88754 * 23.93309 * 13 12 10 15 15 C 1.53957 * 113.66372 * 252.46373 * 13 12 10 16 16 C 1.53947 * 87.29654 * 220.79461 * 15 13 12 17 17 H 1.09000 * 113.66476 * 270.25832 * 16 15 13 18 18 N 1.46501 * 113.74661 * 139.21354 * 16 15 13 19 19 C 1.36941 * 119.99483 * 107.77215 * 18 16 15 20 20 H 1.07997 * 120.00677 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99419 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00394 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99641 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47001 * 120.00066 * 23 21 19 26 26 H 1.48504 * 109.46981 * 239.99893 * 23 21 19 27 27 C 1.52908 * 113.66357 * 155.27989 * 13 12 10 28 28 C 1.52908 * 121.13642 * 13.64835 * 27 13 12 29 29 C 1.53946 * 86.78542 * 209.38235 * 28 27 13 30 30 C 1.52910 * 121.13509 * 265.09062 * 27 13 12 31 31 H 1.08995 * 109.47101 * 270.16164 * 1 2 3 32 32 H 1.09007 * 109.46936 * 30.16186 * 1 2 3 33 33 H 1.09000 * 109.47170 * 150.15701 * 1 2 3 34 34 H 1.09001 * 109.47267 * 269.99595 * 6 5 4 35 35 H 1.08994 * 109.47380 * 29.99427 * 6 5 4 36 36 H 1.09002 * 109.46986 * 149.99814 * 6 5 4 37 37 H 1.09000 * 109.47047 * 329.99106 * 8 7 5 38 38 H 1.09007 * 109.46879 * 210.00118 * 8 7 5 39 39 H 1.09003 * 109.46690 * 59.99942 * 9 8 7 40 40 H 1.08993 * 109.46773 * 300.00278 * 9 8 7 41 41 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 42 42 H 1.09000 * 113.57648 * 335.40139 * 15 13 12 43 43 H 1.08999 * 113.57776 * 106.19339 * 15 13 12 44 44 H 0.96998 * 120.00214 * 287.77608 * 18 16 15 45 45 H 0.97001 * 119.99746 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.66478 * 323.85928 * 28 27 13 47 47 H 1.09008 * 113.65934 * 94.91137 * 28 27 13 48 48 H 1.08996 * 113.58314 * 270.13495 * 29 28 27 49 49 H 1.08999 * 113.65166 * 139.34935 * 29 28 27 50 50 H 1.09004 * 113.66092 * 265.08702 * 30 27 13 51 51 H 1.08994 * 113.66382 * 36.05415 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0036 6 6 4.9021 -1.3697 -0.0089 7 6 2.3539 -1.1321 0.0036 8 6 1.9590 -2.5864 0.0074 9 6 1.8329 -3.0770 1.4511 10 6 1.4374 -4.5312 1.4547 11 8 1.2731 -5.1176 0.4059 12 7 1.2674 -5.1803 2.6236 13 6 0.8771 -6.5923 2.6272 14 1 1.1493 -7.1097 1.7072 15 6 -0.5801 -6.8295 3.0640 16 6 -0.0676 -8.0452 3.8574 17 1 -0.0623 -8.9717 3.2832 18 7 -0.6904 -8.1950 5.1749 19 6 -1.5934 -9.2007 5.3950 20 1 -1.8467 -9.8832 4.5973 21 6 -2.1839 -9.3423 6.6432 22 7 -1.8764 -8.5096 7.6151 23 14 -3.4151 -10.7146 6.9437 24 1 -3.5868 -11.5068 5.6995 25 1 -2.9169 -11.5978 8.0287 26 1 -4.7208 -10.1298 7.3417 27 6 1.2884 -7.3395 3.8963 28 6 1.7516 -6.5850 5.1430 29 6 2.6131 -7.8198 5.4642 30 6 2.5925 -8.1355 3.9575 31 1 -0.3633 0.0029 1.0276 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5114 34 1 5.2102 -1.5553 -1.0379 35 1 5.6685 -0.7853 0.5000 36 1 4.7675 -2.3203 0.5071 37 1 2.7199 -3.1709 -0.5099 38 1 1.0022 -2.7044 -0.5014 39 1 1.0719 -2.4926 1.9682 40 1 2.7897 -2.9590 1.9597 41 1 1.3992 -4.7114 3.4624 42 1 -0.9812 -6.0354 3.6937 43 1 -1.2442 -7.0943 2.2413 44 1 -0.4633 -7.5817 5.8913 45 1 -2.2888 -8.6088 8.4874 46 1 2.3341 -5.6907 4.9219 47 1 0.9564 -6.4061 5.8667 48 1 2.0990 -8.5638 6.0726 49 1 3.6045 -7.5742 5.8448 50 1 2.4691 -9.1953 3.7343 51 1 3.4109 -7.6778 3.4020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:09 Heat of formation + Delta-G solvation = 43.312690 kcal Electronic energy + Delta-G solvation = -30471.954605 eV Core-core repulsion = 26374.986004 eV Total energy + Delta-G solvation = -4096.968601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.90507 -41.86328 -40.17662 -36.86431 -36.24101 -35.66976 -34.72555 -34.01471 -32.67305 -31.62639 -29.61509 -28.66741 -26.87120 -26.70781 -25.83008 -25.40041 -23.62218 -22.28748 -21.75846 -21.22087 -20.95438 -19.62382 -18.85035 -18.58315 -18.14270 -17.64473 -17.40229 -16.64189 -16.35502 -16.31241 -16.03244 -15.41188 -15.22963 -14.89438 -14.76647 -14.32590 -14.26829 -14.04988 -13.93182 -13.68033 -13.65395 -13.45930 -13.40153 -13.21262 -13.16296 -13.08459 -12.92228 -12.87075 -12.73138 -12.27186 -12.24256 -12.20859 -12.01372 -11.84598 -11.71320 -11.33385 -11.19258 -10.96155 -10.87482 -10.72396 -10.66595 -10.03091 -9.81060 -8.93757 -7.93963 -5.20321 0.51151 1.20078 1.46909 1.47978 1.57142 1.71462 2.19306 2.33668 2.57616 3.24801 3.37580 3.53514 3.55272 3.64335 3.74217 3.82091 3.88335 3.97580 4.04595 4.06675 4.15443 4.27201 4.33309 4.35729 4.43629 4.58739 4.62378 4.65027 4.71480 4.72093 4.73653 4.79158 4.83097 4.83893 4.88961 4.95199 5.05115 5.07017 5.10870 5.12549 5.16580 5.18596 5.24221 5.36692 5.41994 5.53114 5.55111 5.66926 5.75291 6.29036 6.66962 7.33079 7.34184 7.36439 8.13024 8.37273 9.29148 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.002039 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.317502 B =13729.607057 C =14388.550586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.015 3.985 3 N -0.402 5.402 4 O 0.081 5.919 5 C -0.022 4.022 6 C -0.077 4.077 7 C -0.208 4.208 8 C -0.016 4.016 9 C -0.127 4.127 10 C 0.514 3.486 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.152 3.848 14 H 0.106 0.894 15 C -0.170 4.170 16 C 0.171 3.829 17 H 0.073 0.927 18 N -0.716 5.716 19 C -0.238 4.238 20 H 0.073 0.927 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.966 3.034 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.296 1.296 27 C -0.110 4.110 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.115 4.115 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.411 0.589 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.379 0.621 45 H 0.250 0.750 46 H 0.108 0.892 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.058 0.942 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.403 15.085 -14.246 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 N -0.111 5.111 4 O 0.019 5.981 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.212 4.212 8 C -0.054 4.054 9 C -0.167 4.167 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.355 5.355 13 C 0.046 3.954 14 H 0.123 0.877 15 C -0.212 4.212 16 C 0.061 3.939 17 H 0.091 0.909 18 N -0.354 5.354 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.223 1.223 27 C -0.113 4.113 28 C -0.147 4.147 29 C -0.168 4.168 30 C -0.153 4.153 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.248 0.752 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.213 0.787 45 H 0.059 0.941 46 H 0.126 0.874 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.972 15.822 -14.995 26.445 hybrid contribution -1.266 -1.078 1.134 2.012 sum 13.707 14.744 -13.862 24.442 Atomic orbital electron populations 1.20291 0.84773 1.04342 1.04285 1.23935 0.99988 0.88687 1.01759 1.73845 0.89917 1.25102 1.22253 1.84760 1.21317 1.23742 1.68250 1.24957 0.99554 0.83080 1.00978 1.20590 0.88521 0.98819 1.05434 1.21032 0.91700 0.97409 1.11100 1.19490 1.03168 0.86944 0.95835 1.21637 1.05479 0.90465 0.99110 1.21144 0.75639 0.89929 0.83092 1.90691 1.52918 1.69994 1.32731 1.45895 1.69266 1.11221 1.09081 1.21855 0.94058 0.81662 0.97851 0.87651 1.24106 0.96722 1.00561 0.99791 1.21343 0.90972 0.94950 0.86681 0.90873 1.42445 1.48822 1.35021 1.09145 1.19683 1.15372 1.06286 0.95718 0.90932 1.25448 1.03049 1.01713 0.96282 1.69795 1.48389 1.40603 1.02891 0.85177 0.78546 0.79056 0.77625 1.19309 1.22176 1.22339 1.23348 0.95314 0.97723 0.94892 1.22461 0.98927 0.97809 0.95474 1.22637 0.99923 0.97753 0.96534 1.22702 0.96490 0.99670 0.96417 0.89121 0.90472 0.88985 0.88065 0.88345 0.87618 0.89493 0.90725 0.87649 0.86263 0.75207 0.91217 0.92819 0.78705 0.94117 0.87362 0.93233 0.92976 0.89960 0.92368 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.39 71.23 0.74 -0.40 16 2 C 0.01 0.28 7.33 43.58 0.32 0.60 16 3 N -0.40 -9.15 12.07 -49.54 -0.60 -9.75 16 4 O 0.08 1.62 11.20 71.61 0.80 2.42 16 5 C -0.02 -0.32 7.49 25.04 0.19 -0.13 16 6 C -0.08 -0.47 10.25 71.24 0.73 0.26 16 7 C -0.21 -3.34 5.58 -19.73 -0.11 -3.45 16 8 C -0.02 -0.24 4.75 29.85 0.14 -0.10 16 9 C -0.13 -1.67 5.68 29.85 0.17 -1.50 16 10 C 0.51 10.75 7.83 87.66 0.69 11.43 16 11 O -0.58 -16.95 15.58 -3.04 -0.05 -16.99 16 12 N -0.70 -14.58 5.25 -441.15 -2.32 -16.90 16 13 C 0.15 4.08 4.12 45.28 0.19 4.27 16 14 H 0.11 3.03 7.47 -2.39 -0.02 3.01 16 15 C -0.17 -5.69 7.69 31.23 0.24 -5.45 16 16 C 0.17 6.44 4.36 45.28 0.20 6.63 16 17 H 0.07 2.83 8.10 -2.39 -0.02 2.81 16 18 N -0.72 -34.20 5.33 -321.56 -1.71 -35.91 16 19 C -0.24 -12.89 9.97 84.03 0.84 -12.05 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 23 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 27 C -0.11 -3.15 1.06 -52.31 -0.06 -3.20 16 28 C -0.11 -2.91 6.77 30.88 0.21 -2.70 16 29 C -0.13 -3.62 8.08 31.23 0.25 -3.36 16 30 C -0.12 -2.93 7.84 30.89 0.24 -2.69 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.11 0.40 8.05 -2.39 -0.02 0.38 16 37 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 38 H 0.07 1.29 7.61 -2.38 -0.02 1.27 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.41 6.76 7.04 -92.71 -0.65 6.11 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.38 19.18 5.92 -92.71 -0.55 18.63 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.11 2.06 7.03 -2.39 -0.02 2.04 16 47 H 0.05 1.65 6.42 -2.38 -0.02 1.63 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -71.34 415.21 3.63 -67.71 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.25 Total: 34.42 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.44 Total: -15.44 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -4.34 Total: -119.80 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.75 Total: -14.57 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.34 3.63 -67.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.021 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds