Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.45911 * 2 1 4 4 O 1.21276 * 120.00379 * 237.40379 * 3 2 1 5 5 N 1.34775 * 119.99831 * 57.39881 * 3 2 1 6 6 C 1.46500 * 120.00170 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47099 * 180.02562 * 6 5 3 8 8 C 1.53009 * 109.47016 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46902 * 179.97438 * 8 7 6 10 10 C 1.36935 * 119.99985 * 269.99852 * 9 8 7 11 11 H 1.08002 * 120.00351 * 321.95764 * 10 9 8 12 12 C 1.38814 * 119.99726 * 141.96369 * 10 9 8 13 13 N 1.31617 * 119.99797 * 160.71009 * 12 10 9 14 14 Si 1.86803 * 120.00084 * 340.70506 * 12 10 9 15 15 H 1.48502 * 109.47122 * 95.28923 * 14 12 10 16 16 H 1.48499 * 109.46794 * 215.29011 * 14 12 10 17 17 H 1.48504 * 109.46977 * 335.28987 * 14 12 10 18 18 C 1.46502 * 119.99825 * 89.99970 * 9 8 7 19 19 C 1.50703 * 109.46906 * 86.11087 * 18 9 8 20 20 C 1.38673 * 120.41903 * 93.51960 * 19 18 9 21 21 C 1.38627 * 118.42269 * 180.02562 * 20 19 18 22 22 C 1.38224 * 119.15891 * 0.02562 * 21 20 19 23 23 N 1.31853 * 120.76631 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72658 * 359.70691 * 23 22 21 25 25 C 1.54511 * 110.50665 * 237.39937 * 2 1 3 26 26 C 1.54475 * 104.06407 * 241.21573 * 25 2 1 27 27 O 1.44435 * 104.80217 * 23.97927 * 26 25 2 28 28 C 1.44425 * 105.27247 * 319.48605 * 27 26 25 29 29 H 1.08988 * 109.47367 * 60.69481 * 1 2 3 30 30 H 1.08995 * 109.47348 * 180.70081 * 1 2 3 31 31 H 1.09007 * 109.46657 * 300.69396 * 1 2 3 32 32 H 0.97005 * 120.00004 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47465 * 59.99434 * 6 5 3 34 34 H 1.08999 * 109.46743 * 299.99282 * 6 5 3 35 35 H 1.09000 * 109.47034 * 299.99081 * 7 6 5 36 36 H 1.08998 * 109.47445 * 59.99725 * 7 6 5 37 37 H 1.09000 * 109.46724 * 299.99583 * 8 7 6 38 38 H 1.08998 * 109.46983 * 59.99754 * 8 7 6 39 39 H 0.96999 * 119.99964 * 180.02562 * 13 12 10 40 40 H 1.08997 * 109.47431 * 206.10835 * 18 9 8 41 41 H 1.08998 * 109.47122 * 326.11450 * 18 9 8 42 42 H 1.08005 * 120.78930 * 359.97438 * 20 19 18 43 43 H 1.07997 * 120.41631 * 180.02562 * 21 20 19 44 44 H 1.08003 * 119.61489 * 179.97438 * 22 21 20 45 45 H 1.07991 * 119.62170 * 180.31265 * 24 23 22 46 46 H 1.09000 * 110.51454 * 359.86338 * 25 2 1 47 47 H 1.09002 * 110.50961 * 122.43470 * 25 2 1 48 48 H 1.08999 * 110.37924 * 142.80998 * 26 25 2 49 49 H 1.09003 * 110.37664 * 265.15201 * 26 25 2 50 50 H 1.08995 * 110.37384 * 281.67887 * 28 27 26 51 51 H 1.09003 * 110.36506 * 159.33796 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7988 1.7824 -0.8848 5 7 1.7031 2.2631 0.9833 6 6 2.2147 3.6358 0.9831 7 6 1.6653 4.3850 2.1987 8 6 2.2002 5.8186 2.1988 9 7 1.6736 6.5361 3.3625 10 6 0.4915 7.2207 3.2675 11 1 0.2508 7.7598 2.3631 12 6 -0.3974 7.2220 4.3337 13 7 -1.3264 8.1508 4.4147 14 14 -0.2750 5.9056 5.6534 15 1 0.5295 6.4187 6.7913 16 1 -1.6370 5.5536 6.1290 17 1 0.3797 4.6982 5.0889 18 6 2.4119 6.5212 4.6279 19 6 3.4387 7.6243 4.6234 20 6 3.1383 8.8653 5.1643 21 6 4.1135 9.8502 5.1378 22 6 5.3440 9.5646 4.5765 23 7 5.5946 8.3728 4.0712 24 6 4.6931 7.4103 4.0847 25 6 2.0713 -0.7797 -1.2192 26 6 2.8786 -1.9394 -0.5949 27 8 2.3119 -2.1166 0.7217 28 6 2.0744 -0.7808 1.2167 29 1 -0.3633 0.5029 -0.8960 30 1 -0.3634 -1.0275 0.0126 31 1 -0.3633 0.5246 0.8838 32 1 1.1092 1.9669 1.6908 33 1 1.8983 4.1414 0.0708 34 1 3.3035 3.6177 1.0295 35 1 0.5764 4.4032 2.1528 36 1 1.9821 3.8794 3.1109 37 1 3.2890 5.8001 2.2450 38 1 1.8837 6.3245 1.2867 39 1 -1.9473 8.1519 5.1600 40 1 1.7185 6.6737 5.4549 41 1 2.9119 5.5599 4.7454 42 1 2.1673 9.0602 5.5954 43 1 3.9143 10.8281 5.5505 44 1 6.1090 10.3266 4.5515 45 1 4.9365 6.4451 3.6659 46 1 1.2489 -1.1672 -1.8206 47 1 2.7180 -0.1432 -1.8232 48 1 2.7574 -2.8474 -1.1855 49 1 3.9327 -1.6715 -0.5213 50 1 3.0050 -0.3353 1.5681 51 1 1.3351 -0.7988 2.0176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230876509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = -51.378547 kcal Electronic energy + Delta-G solvation = -30545.666545 eV Core-core repulsion = 26444.591824 eV Total energy + Delta-G solvation = -4101.074721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71285 -41.00280 -39.54621 -38.25810 -36.36134 -34.75115 -34.03015 -33.64252 -32.65729 -31.59398 -30.61941 -27.74194 -27.58344 -27.24777 -24.58419 -24.32015 -23.81239 -23.23449 -22.78713 -21.85496 -20.37906 -18.97595 -18.45382 -17.86798 -17.56206 -17.36043 -16.88544 -16.84168 -16.67932 -16.30767 -16.13619 -15.95897 -15.71528 -15.21572 -14.97533 -14.79033 -14.55315 -14.34303 -14.30628 -14.22694 -13.88491 -13.63467 -13.47326 -13.30700 -13.18861 -13.05585 -12.86441 -12.68332 -12.48973 -12.28097 -12.20768 -12.02005 -11.98326 -11.79675 -11.64126 -11.52317 -10.84163 -10.79721 -10.71735 -10.62921 -10.33853 -10.13514 -9.83702 -8.83490 -8.18297 -5.60685 0.27500 0.42763 1.32097 1.43105 1.51283 1.53375 2.09207 2.41510 2.86389 2.95339 3.15303 3.28890 3.41331 3.63213 3.66883 3.75673 3.93581 3.98806 4.02326 4.11613 4.16733 4.18953 4.20463 4.23207 4.25604 4.46635 4.53534 4.55371 4.62013 4.63910 4.71028 4.73355 4.79451 4.80204 4.84062 4.84471 4.94891 4.96341 4.98030 5.05550 5.19665 5.27963 5.28834 5.37958 5.48129 5.53691 5.70447 5.87009 5.94143 6.18912 6.47892 6.94982 7.08255 7.14728 7.59535 8.01016 9.00862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.002527 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.153348 B =11078.653880 C =12430.047290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.523 3.477 4 O -0.578 6.578 5 N -0.714 5.714 6 C 0.130 3.870 7 C -0.135 4.135 8 C 0.152 3.848 9 N -0.602 5.602 10 C -0.252 4.252 11 H 0.035 0.965 12 C -0.014 4.014 13 N -0.950 5.950 14 Si 0.938 3.062 15 H -0.280 1.280 16 H -0.314 1.314 17 H -0.238 1.238 18 C 0.169 3.831 19 C -0.145 4.145 20 C -0.080 4.080 21 C -0.171 4.171 22 C 0.080 3.920 23 N -0.505 5.505 24 C 0.095 3.905 25 C -0.144 4.144 26 C 0.044 3.956 27 O -0.384 6.384 28 C 0.060 3.940 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.412 0.588 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.154 0.846 44 H 0.183 0.817 45 H 0.166 0.834 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -15.424 -3.167 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C 0.309 3.691 4 O -0.458 6.458 5 N -0.366 5.366 6 C 0.006 3.994 7 C -0.175 4.175 8 C 0.027 3.973 9 N -0.323 5.323 10 C -0.382 4.382 11 H 0.053 0.947 12 C -0.210 4.210 13 N -0.593 5.593 14 Si 0.767 3.233 15 H -0.207 1.207 16 H -0.243 1.243 17 H -0.161 1.161 18 C 0.044 3.956 19 C -0.150 4.150 20 C -0.107 4.107 21 C -0.190 4.190 22 C -0.077 4.077 23 N -0.214 5.214 24 C -0.062 4.062 25 C -0.182 4.182 26 C -0.033 4.033 27 O -0.303 6.303 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.172 0.828 44 H 0.200 0.800 45 H 0.184 0.816 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.132 0.868 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.469 -15.463 -3.993 18.566 hybrid contribution -1.755 0.520 1.140 2.156 sum 7.714 -14.942 -2.853 17.056 Atomic orbital electron populations 1.21856 0.89770 1.04208 1.03226 1.22191 0.99421 0.91239 0.98751 1.20682 0.79834 0.87693 0.80847 1.90660 1.38318 1.78709 1.38069 1.46015 1.50411 1.12292 1.27838 1.21232 0.98823 0.80929 0.98456 1.22216 1.01238 0.97167 0.96929 1.20887 0.97087 0.90057 0.89286 1.44120 1.21273 1.57856 1.09018 1.18555 0.94221 1.23746 1.01647 0.94731 1.26039 0.95402 0.98676 1.00900 1.69980 1.21957 1.34256 1.33136 0.85952 0.75405 0.82596 0.79360 1.20730 1.24313 1.16110 1.20266 0.91304 0.95075 0.88992 1.21833 0.96775 0.97998 0.98380 1.21630 0.98881 0.93555 0.96670 1.22364 0.94499 1.00737 1.01424 1.23142 0.96301 0.94242 0.94008 1.67668 1.35118 1.01981 1.16645 1.22752 0.88665 0.98684 0.96079 1.23040 1.01418 0.96828 0.96869 1.23562 0.96805 0.99474 0.83421 1.89119 1.83258 1.25888 1.32001 1.23527 1.00861 0.82163 0.95157 0.92132 0.89603 0.90703 0.75111 0.92676 0.91289 0.92474 0.90986 0.91471 0.94076 0.92877 0.93680 0.89893 0.87062 0.82804 0.80022 0.81646 0.88623 0.89946 0.86820 0.92308 0.92283 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.18 71.98 0.59 -1.24 16 2 C -0.11 -1.96 0.89 -51.91 -0.05 -2.00 16 3 C 0.52 12.33 6.41 87.66 0.56 12.90 16 4 O -0.58 -18.22 15.28 -3.02 -0.05 -18.26 16 5 N -0.71 -15.25 5.44 -463.08 -2.52 -17.77 16 6 C 0.13 3.24 5.67 86.38 0.49 3.73 16 7 C -0.14 -3.80 5.65 30.60 0.17 -3.62 16 8 C 0.15 5.11 5.69 86.38 0.49 5.60 16 9 N -0.60 -24.87 2.07 -706.32 -1.46 -26.34 16 10 C -0.25 -13.12 9.94 84.03 0.84 -12.28 16 11 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 12 C -0.01 -0.73 5.33 84.86 0.45 -0.28 16 13 N -0.95 -56.22 13.97 21.65 0.30 -55.91 16 14 Si 0.94 41.70 24.85 68.60 1.70 43.41 16 15 H -0.28 -12.06 6.70 99.48 0.67 -11.39 16 16 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 17 H -0.24 -9.38 7.11 99.48 0.71 -8.67 16 18 C 0.17 6.31 4.48 85.63 0.38 6.69 16 19 C -0.15 -5.18 5.48 -19.77 -0.11 -5.29 16 20 C -0.08 -2.92 9.85 22.47 0.22 -2.69 16 21 C -0.17 -5.00 10.11 22.36 0.23 -4.77 16 22 C 0.08 2.21 11.18 84.69 0.95 3.16 16 23 N -0.51 -15.91 10.36 -195.85 -2.03 -17.94 16 24 C 0.10 3.02 10.60 84.67 0.90 3.91 16 25 C -0.14 -2.46 6.32 31.61 0.20 -2.26 16 26 C 0.04 0.68 7.63 72.48 0.55 1.24 16 27 O -0.38 -7.18 11.65 -148.98 -1.74 -8.91 16 28 C 0.06 0.96 6.72 72.48 0.49 1.45 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.88 7.49 -2.38 -0.02 0.86 16 32 H 0.41 6.89 7.79 -92.70 -0.72 6.17 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.94 7.34 -2.39 -0.02 1.92 16 38 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.05 1.88 3.22 -2.39 -0.01 1.87 16 41 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 42 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.17 4.40 7.61 -2.92 -0.02 4.38 16 46 H 0.10 1.33 7.73 -2.39 -0.02 1.31 16 47 H 0.08 1.77 6.50 -2.39 -0.02 1.75 16 48 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 1.00 7.86 -2.39 -0.02 0.99 16 51 H 0.12 1.42 7.88 -2.39 -0.02 1.40 16 Total: -1.00 -69.96 409.90 1.73 -68.23 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.16 Total: 29.28 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 7.35 Total: 4.23 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -5.71 Total: -117.96 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.78 Total: -27.18 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.70 Total: 43.41 kcal Total: -69.96 1.73 -68.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230876509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.848 kcal (2) G-P(sol) polarization free energy of solvation -69.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds