Wall clock time and date at job start Wed Apr 1 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34863 * 119.10182 * 2 1 4 4 C 1.41675 * 119.33815 * 179.97438 * 3 2 1 5 5 O 1.22087 * 121.06538 * 179.97438 * 4 3 2 6 6 C 1.47093 * 117.86424 * 359.97438 * 4 3 2 7 7 C 1.47288 * 120.88287 * 179.97438 * 6 4 3 8 8 O 1.21612 * 119.99973 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00060 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00340 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47165 * 185.51195 * 12 11 10 14 14 H 1.09006 * 109.87124 * 50.16858 * 13 12 11 15 15 C 1.54319 * 110.01196 * 171.27039 * 13 12 11 16 16 C 1.55156 * 102.94025 * 141.68239 * 15 13 12 17 17 C 1.54910 * 101.58291 * 324.49788 * 16 15 13 18 18 N 1.47020 * 109.87918 * 289.15746 * 13 12 11 19 19 C 1.36945 * 125.65093 * 61.44823 * 18 13 12 20 20 H 1.07995 * 119.99995 * 306.60659 * 19 18 13 21 21 C 1.38819 * 119.99950 * 126.60144 * 19 18 13 22 22 N 1.31605 * 119.99853 * 175.53657 * 21 19 18 23 23 Si 1.86798 * 119.99805 * 355.53847 * 21 19 18 24 24 H 1.48501 * 109.47142 * 90.33900 * 23 21 19 25 25 H 1.48504 * 109.47098 * 210.33616 * 23 21 19 26 26 H 1.48507 * 109.47494 * 330.33902 * 23 21 19 27 27 C 1.37996 * 118.23624 * 0.27478 * 6 4 3 28 28 N 1.34347 * 120.36746 * 359.46565 * 27 6 4 29 29 C 1.46497 * 118.80338 * 180.24689 * 28 27 6 30 30 H 1.09005 * 109.47146 * 94.22573 * 1 2 3 31 31 H 1.09000 * 109.47542 * 214.23065 * 1 2 3 32 32 H 1.09000 * 109.47035 * 334.23235 * 1 2 3 33 33 H 1.08002 * 120.33551 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00176 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47182 * 60.00021 * 10 9 7 36 36 H 1.09004 * 109.46620 * 299.99959 * 10 9 7 37 37 H 1.09003 * 109.47175 * 59.99557 * 11 10 9 38 38 H 1.09004 * 109.46724 * 299.99917 * 11 10 9 39 39 H 1.08995 * 109.47163 * 65.51319 * 12 11 10 40 40 H 1.09003 * 109.47366 * 305.50996 * 12 11 10 41 41 H 1.08994 * 110.72214 * 23.31919 * 15 13 12 42 42 H 1.08993 * 110.72033 * 260.04048 * 15 13 12 43 43 H 1.09005 * 111.00562 * 206.42436 * 16 15 13 44 44 H 1.08998 * 111.01046 * 82.57250 * 16 15 13 45 45 H 1.09007 * 110.36802 * 155.85040 * 17 16 15 46 46 H 1.09005 * 110.36484 * 278.05918 * 17 16 15 47 47 H 0.97002 * 120.00057 * 180.02562 * 22 21 19 48 48 H 1.08001 * 119.81458 * 179.70269 * 27 6 4 49 49 H 1.09000 * 109.47432 * 264.04600 * 29 28 27 50 50 H 1.09007 * 109.47257 * 24.04470 * 29 28 27 51 51 H 1.09002 * 109.47348 * 144.04043 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2326 0.0001 6 6 4.2724 -0.1133 0.0017 7 6 5.7436 -0.1848 0.0017 8 8 6.4021 0.8376 0.0013 9 7 6.3600 -1.3833 0.0033 10 6 7.8233 -1.4545 0.0039 11 6 8.2627 -2.9201 0.0051 12 6 9.7909 -2.9943 0.0051 13 6 10.2306 -4.4534 -0.1323 14 1 9.7118 -4.9194 -0.9701 15 6 11.7562 -4.5266 -0.3533 16 6 12.1674 -5.7741 0.4725 17 6 11.1989 -5.6823 1.6780 18 7 9.9337 -5.1840 1.1085 19 6 8.6882 -5.3702 1.6466 20 1 8.0463 -4.5210 1.8289 21 6 8.2508 -6.6504 1.9576 22 7 7.0909 -6.8224 2.5551 23 14 9.3086 -8.1289 1.5280 24 1 10.2127 -8.4378 2.6648 25 1 8.4362 -9.2997 1.2571 26 1 10.1178 -7.8246 0.3205 27 6 3.5075 -1.2619 -0.0037 28 7 2.1663 -1.1847 0.0011 29 6 1.3879 -2.4257 0.0006 30 1 -0.3634 -0.0757 -1.0249 31 1 -0.3634 -0.8496 0.5781 32 1 -0.3633 0.9255 0.4468 33 1 1.6137 2.1083 -0.0004 34 1 5.8349 -2.1989 0.0040 35 1 8.2109 -0.9580 0.8935 36 1 8.2115 -0.9599 -0.8865 37 1 7.8752 -3.4163 -0.8847 38 1 7.8745 -3.4150 0.8953 39 1 10.1745 -2.5858 0.9400 40 1 10.1828 -2.4164 -0.8319 41 1 12.2449 -3.6314 0.0311 42 1 11.9865 -4.6698 -1.4089 43 1 13.2050 -5.7022 0.7986 44 1 12.0002 -6.6902 -0.0940 45 1 11.0529 -6.6665 2.1232 46 1 11.5835 -4.9838 2.4212 47 1 6.7853 -7.7169 2.7727 48 1 3.9898 -2.2282 -0.0079 49 1 1.1010 -2.6744 -1.0211 50 1 1.9913 -3.2333 0.4153 51 1 0.4922 -2.2930 0.6075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267168463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:09 Heat of formation + Delta-G solvation = -13.636987 kcal Electronic energy + Delta-G solvation = -30509.670824 eV Core-core repulsion = 26410.232700 eV Total energy + Delta-G solvation = -4099.438124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38426 -39.16552 -38.10057 -37.72271 -35.07190 -33.79939 -32.96964 -32.64482 -32.09616 -29.93863 -29.05127 -27.82098 -27.13504 -24.93808 -24.39183 -23.82410 -21.86719 -21.25535 -20.57326 -20.22692 -19.28523 -18.11830 -17.73225 -16.94538 -16.37543 -16.31199 -16.15642 -15.83626 -15.24722 -15.14449 -14.58743 -14.46417 -14.23936 -13.82304 -13.77219 -13.48903 -13.44148 -13.27193 -13.16867 -12.80251 -12.70762 -12.54065 -12.36987 -12.23317 -12.11033 -12.00292 -11.89681 -11.34287 -11.19294 -10.90065 -10.79093 -10.59047 -10.28080 -10.01711 -9.95827 -9.82205 -9.74992 -9.69180 -9.39184 -9.11126 -8.72594 -8.56464 -8.06998 -6.50555 -6.01732 -3.72434 0.72551 1.14964 2.11956 3.11354 3.27963 3.38992 3.41242 3.47184 3.82110 3.89449 4.18893 4.29868 4.45688 4.47600 4.59734 4.81180 4.87796 4.93836 4.99411 5.05249 5.14279 5.19152 5.30548 5.32828 5.47633 5.50904 5.58732 5.59563 5.62770 5.69414 5.90692 6.05726 6.09891 6.18466 6.21879 6.25066 6.34403 6.35871 6.40741 6.51212 6.53915 6.57621 6.66655 6.76281 6.84170 6.91087 7.04984 7.12847 7.81762 8.05408 8.14591 8.43491 8.59667 8.82555 9.58191 10.30694 11.05959 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.002505 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.939300 B =11173.767869 C =12954.861360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 C -0.271 4.271 4 C 0.408 3.592 5 O -0.483 6.483 6 C -0.298 4.298 7 C 0.569 3.431 8 O -0.518 6.518 9 N -0.730 5.730 10 C 0.123 3.877 11 C -0.141 4.141 12 C -0.113 4.113 13 C 0.156 3.844 14 H 0.040 0.960 15 C -0.126 4.126 16 C -0.139 4.139 17 C 0.117 3.883 18 N -0.603 5.603 19 C -0.253 4.253 20 H 0.086 0.914 21 C 0.043 3.957 22 N -0.908 5.908 23 Si 0.894 3.106 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.263 1.263 27 C 0.176 3.824 28 N -0.470 5.470 29 C 0.046 3.954 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.027 0.973 47 H 0.263 0.737 48 H 0.170 0.830 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 5.210 -7.260 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.295 4.295 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.309 4.309 7 C 0.356 3.644 8 O -0.394 6.394 9 N -0.383 5.383 10 C 0.000 4.000 11 C -0.178 4.178 12 C -0.153 4.153 13 C 0.050 3.950 14 H 0.057 0.943 15 C -0.164 4.164 16 C -0.177 4.177 17 C -0.007 4.007 18 N -0.330 5.330 19 C -0.381 4.381 20 H 0.103 0.897 21 C -0.159 4.159 22 N -0.548 5.548 23 Si 0.725 3.275 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.188 1.188 27 C 0.045 3.955 28 N -0.157 5.157 29 C -0.095 4.095 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.169 0.831 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.187 0.813 49 H 0.101 0.899 50 H 0.117 0.883 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.668 6.233 -7.152 15.826 hybrid contribution 0.199 -1.629 -0.077 1.643 sum -12.469 4.603 -7.229 15.130 Atomic orbital electron populations 1.21192 0.88105 1.05023 1.04126 1.20273 0.94857 0.85038 0.94929 1.22264 0.96332 0.97141 1.13791 1.18151 0.88217 0.87911 0.76341 1.90815 1.69969 1.33242 1.42365 1.22571 0.94514 0.95063 1.18765 1.17486 0.86086 0.83701 0.77119 1.90830 1.65924 1.34049 1.48579 1.46001 1.08327 1.07588 1.76344 1.21468 0.78475 0.98575 1.01488 1.22176 0.97270 0.93282 1.05044 1.21846 0.94650 0.98170 1.00616 1.21103 0.92144 0.91284 0.90428 0.94262 1.22578 0.96880 0.97870 0.99104 1.22791 0.98469 0.98169 0.98260 1.21875 0.87709 0.97174 0.93960 1.44568 1.01788 1.64617 1.22052 1.18607 0.89906 0.92139 1.37462 0.89703 1.25860 0.94939 0.98287 0.96773 1.69751 1.20011 1.22471 1.42576 0.86585 0.79693 0.81821 0.79427 1.21370 1.23181 1.18789 1.22334 0.82130 1.00182 0.90859 1.42581 1.05348 1.07269 1.60518 1.22598 0.97987 0.84447 1.04496 0.89340 0.90041 0.88928 0.83133 0.77141 0.91928 0.92402 0.92322 0.87469 0.92179 0.93396 0.91700 0.92077 0.92006 0.91855 0.94399 0.95516 0.92676 0.81253 0.89902 0.88285 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.40 9.38 36.00 0.34 -0.07 16 2 C 0.15 1.16 6.64 -82.14 -0.55 0.62 16 3 C -0.27 -3.02 9.57 -39.47 -0.38 -3.40 16 4 C 0.41 6.68 6.96 -34.68 -0.24 6.44 16 5 O -0.48 -10.29 16.41 -15.18 -0.25 -10.54 16 6 C -0.30 -4.38 6.05 -102.72 -0.62 -5.00 16 7 C 0.57 10.11 7.77 -12.58 -0.10 10.01 16 8 O -0.52 -11.70 15.57 -14.75 -0.23 -11.93 16 9 N -0.73 -11.08 5.51 -61.43 -0.34 -11.41 16 10 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 11 C -0.14 -2.37 4.89 -26.73 -0.13 -2.50 16 12 C -0.11 -1.92 4.70 -26.73 -0.13 -2.05 16 13 C 0.16 2.96 3.20 -66.95 -0.21 2.75 16 14 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 15 C -0.13 -2.03 6.48 -24.90 -0.16 -2.19 16 16 C -0.14 -2.38 7.08 -24.58 -0.17 -2.55 16 17 C 0.12 2.44 6.17 -2.53 -0.02 2.43 16 18 N -0.60 -13.60 2.41 -162.56 -0.39 -13.99 16 19 C -0.25 -6.52 9.34 -15.05 -0.14 -6.66 16 20 H 0.09 2.29 5.23 -52.49 -0.27 2.02 16 21 C 0.04 1.17 5.50 -17.43 -0.10 1.07 16 22 N -0.91 -25.73 13.97 55.49 0.78 -24.96 16 23 Si 0.89 21.64 25.05 -169.99 -4.26 17.38 16 24 H -0.29 -6.92 6.93 56.52 0.39 -6.53 16 25 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.26 -6.20 6.42 56.52 0.36 -5.84 16 27 C 0.18 1.68 9.80 -16.54 -0.16 1.52 16 28 N -0.47 -3.31 2.97 -119.75 -0.36 -3.66 16 29 C 0.05 0.13 9.97 59.85 0.60 0.73 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.12 5.93 -51.93 -0.31 -0.19 16 32 H 0.09 0.25 8.00 -51.93 -0.42 -0.17 16 33 H 0.15 1.43 8.02 -52.49 -0.42 1.01 16 34 H 0.39 4.89 6.55 -40.82 -0.27 4.62 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.11 2.14 4.49 -51.93 -0.23 1.91 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.13 7.53 -51.93 -0.39 0.74 16 45 H 0.04 0.85 4.37 -51.93 -0.23 0.62 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.17 1.17 6.28 -52.49 -0.33 0.84 16 49 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 50 H 0.10 0.25 7.86 -51.92 -0.41 -0.16 16 51 H 0.09 0.11 5.92 -51.93 -0.31 -0.20 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -38.37 397.36 -9.07 -47.45 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.82 Total: 2.56 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.19 Total: 3.12 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.31 Total: -54.02 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.48 Total: -22.47 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.26 Total: 17.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.37 -9.07 -47.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267168463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.809 kcal (2) G-P(sol) polarization free energy of solvation -38.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds