Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34863 * 119.10182 * 2 1 4 4 C 1.41675 * 119.33815 * 179.97438 * 3 2 1 5 5 O 1.22087 * 121.06538 * 179.97438 * 4 3 2 6 6 C 1.47093 * 117.86424 * 359.97438 * 4 3 2 7 7 C 1.47288 * 120.88287 * 179.97438 * 6 4 3 8 8 O 1.21612 * 119.99973 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00060 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00340 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47165 * 185.51195 * 12 11 10 14 14 H 1.09006 * 109.87124 * 50.16858 * 13 12 11 15 15 C 1.54319 * 110.01196 * 171.27039 * 13 12 11 16 16 C 1.55156 * 102.94025 * 141.68239 * 15 13 12 17 17 C 1.54910 * 101.58291 * 324.49788 * 16 15 13 18 18 N 1.47020 * 109.87918 * 289.15746 * 13 12 11 19 19 C 1.36945 * 125.65093 * 61.44823 * 18 13 12 20 20 H 1.07995 * 119.99995 * 306.60659 * 19 18 13 21 21 C 1.38819 * 119.99950 * 126.60144 * 19 18 13 22 22 N 1.31605 * 119.99853 * 175.53657 * 21 19 18 23 23 Si 1.86798 * 119.99805 * 355.53847 * 21 19 18 24 24 H 1.48501 * 109.47142 * 90.33900 * 23 21 19 25 25 H 1.48504 * 109.47098 * 210.33616 * 23 21 19 26 26 H 1.48507 * 109.47494 * 330.33902 * 23 21 19 27 27 C 1.37996 * 118.23624 * 0.27478 * 6 4 3 28 28 N 1.34347 * 120.36746 * 359.46565 * 27 6 4 29 29 C 1.46497 * 118.80338 * 180.24689 * 28 27 6 30 30 H 1.09005 * 109.47146 * 94.22573 * 1 2 3 31 31 H 1.09000 * 109.47542 * 214.23065 * 1 2 3 32 32 H 1.09000 * 109.47035 * 334.23235 * 1 2 3 33 33 H 1.08002 * 120.33551 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00176 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47182 * 60.00021 * 10 9 7 36 36 H 1.09004 * 109.46620 * 299.99959 * 10 9 7 37 37 H 1.09003 * 109.47175 * 59.99557 * 11 10 9 38 38 H 1.09004 * 109.46724 * 299.99917 * 11 10 9 39 39 H 1.08995 * 109.47163 * 65.51319 * 12 11 10 40 40 H 1.09003 * 109.47366 * 305.50996 * 12 11 10 41 41 H 1.08994 * 110.72214 * 23.31919 * 15 13 12 42 42 H 1.08993 * 110.72033 * 260.04048 * 15 13 12 43 43 H 1.09005 * 111.00562 * 206.42436 * 16 15 13 44 44 H 1.08998 * 111.01046 * 82.57250 * 16 15 13 45 45 H 1.09007 * 110.36802 * 155.85040 * 17 16 15 46 46 H 1.09005 * 110.36484 * 278.05918 * 17 16 15 47 47 H 0.97002 * 120.00057 * 180.02562 * 22 21 19 48 48 H 1.08001 * 119.81458 * 179.70269 * 27 6 4 49 49 H 1.09000 * 109.47432 * 264.04600 * 29 28 27 50 50 H 1.09007 * 109.47257 * 24.04470 * 29 28 27 51 51 H 1.09002 * 109.47348 * 144.04043 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2326 0.0001 6 6 4.2724 -0.1133 0.0017 7 6 5.7436 -0.1848 0.0017 8 8 6.4021 0.8376 0.0013 9 7 6.3600 -1.3833 0.0033 10 6 7.8233 -1.4545 0.0039 11 6 8.2627 -2.9201 0.0051 12 6 9.7909 -2.9943 0.0051 13 6 10.2306 -4.4534 -0.1323 14 1 9.7118 -4.9194 -0.9701 15 6 11.7562 -4.5266 -0.3533 16 6 12.1674 -5.7741 0.4725 17 6 11.1989 -5.6823 1.6780 18 7 9.9337 -5.1840 1.1085 19 6 8.6882 -5.3702 1.6466 20 1 8.0463 -4.5210 1.8289 21 6 8.2508 -6.6504 1.9576 22 7 7.0909 -6.8224 2.5551 23 14 9.3086 -8.1289 1.5280 24 1 10.2127 -8.4378 2.6648 25 1 8.4362 -9.2997 1.2571 26 1 10.1178 -7.8246 0.3205 27 6 3.5075 -1.2619 -0.0037 28 7 2.1663 -1.1847 0.0011 29 6 1.3879 -2.4257 0.0006 30 1 -0.3634 -0.0757 -1.0249 31 1 -0.3634 -0.8496 0.5781 32 1 -0.3633 0.9255 0.4468 33 1 1.6137 2.1083 -0.0004 34 1 5.8349 -2.1989 0.0040 35 1 8.2109 -0.9580 0.8935 36 1 8.2115 -0.9599 -0.8865 37 1 7.8752 -3.4163 -0.8847 38 1 7.8745 -3.4150 0.8953 39 1 10.1745 -2.5858 0.9400 40 1 10.1828 -2.4164 -0.8319 41 1 12.2449 -3.6314 0.0311 42 1 11.9865 -4.6698 -1.4089 43 1 13.2050 -5.7022 0.7986 44 1 12.0002 -6.6902 -0.0940 45 1 11.0529 -6.6665 2.1232 46 1 11.5835 -4.9838 2.4212 47 1 6.7853 -7.7169 2.7727 48 1 3.9898 -2.2282 -0.0079 49 1 1.1010 -2.6744 -1.0211 50 1 1.9913 -3.2333 0.4153 51 1 0.4922 -2.2930 0.6075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267168463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = -40.030631 kcal Electronic energy + Delta-G solvation = -30510.815338 eV Core-core repulsion = 26410.232700 eV Total energy + Delta-G solvation = -4100.582638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24195 -40.45203 -39.61013 -38.91557 -36.51470 -34.67203 -34.56699 -33.94450 -33.26054 -31.68829 -30.15907 -28.80800 -27.69732 -26.44562 -25.71461 -25.04198 -23.04284 -22.60444 -21.85432 -21.48788 -20.86302 -19.18528 -18.85521 -18.50198 -17.83293 -17.26478 -17.03949 -16.84064 -16.60085 -16.53300 -16.09515 -15.63555 -15.55520 -15.03992 -14.82909 -14.62890 -14.53570 -14.25764 -14.07254 -13.93644 -13.85184 -13.82917 -13.56185 -13.43830 -13.29645 -13.03934 -12.93037 -12.69462 -12.52070 -12.45539 -12.39437 -12.11642 -11.88036 -11.55408 -11.43567 -11.35313 -11.12279 -11.10009 -10.58181 -10.52490 -10.33715 -10.09488 -9.07329 -8.38911 -8.00792 -5.74959 -0.23596 0.30703 1.35028 1.41981 1.44668 1.54864 1.86729 2.16989 2.46975 2.76665 3.15675 3.20712 3.45887 3.58266 3.62034 3.78529 3.92261 4.05206 4.11514 4.19509 4.22335 4.23022 4.29880 4.40848 4.45959 4.49657 4.59966 4.70588 4.72226 4.75780 4.81586 4.82319 4.85197 4.85846 4.93976 5.00816 5.05194 5.15040 5.20333 5.24020 5.28953 5.30964 5.44778 5.47421 5.56916 5.67846 5.68421 5.78933 6.07387 6.46971 6.58521 6.99618 7.06715 7.29612 7.59327 8.38703 9.03948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.002505 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.939300 B =11173.767869 C =12954.861360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.186 3.814 3 C -0.302 4.302 4 C 0.384 3.616 5 O -0.567 6.567 6 C -0.353 4.353 7 C 0.566 3.434 8 O -0.581 6.581 9 N -0.717 5.717 10 C 0.132 3.868 11 C -0.124 4.124 12 C -0.108 4.108 13 C 0.149 3.851 14 H 0.032 0.968 15 C -0.117 4.117 16 C -0.130 4.130 17 C 0.106 3.894 18 N -0.620 5.620 19 C -0.239 4.239 20 H 0.066 0.934 21 C -0.008 4.008 22 N -0.947 5.947 23 Si 0.944 3.056 24 H -0.289 1.289 25 H -0.310 1.310 26 H -0.252 1.252 27 C 0.219 3.781 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.408 0.592 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.202 0.798 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.521 2.680 -8.830 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 C -0.325 4.325 4 C 0.277 3.723 5 O -0.456 6.456 6 C -0.363 4.363 7 C 0.355 3.645 8 O -0.461 6.461 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.162 4.162 12 C -0.148 4.148 13 C 0.044 3.956 14 H 0.050 0.950 15 C -0.155 4.155 16 C -0.168 4.168 17 C -0.018 4.018 18 N -0.347 5.347 19 C -0.368 4.368 20 H 0.083 0.917 21 C -0.205 4.205 22 N -0.590 5.590 23 Si 0.774 3.226 24 H -0.217 1.217 25 H -0.239 1.239 26 H -0.176 1.176 27 C 0.084 3.916 28 N -0.138 5.138 29 C -0.108 4.108 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.176 0.824 34 H 0.246 0.754 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.219 0.781 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.073 3.626 -8.740 16.959 hybrid contribution 0.444 -0.964 0.435 1.147 sum -13.629 2.662 -8.305 16.181 Atomic orbital electron populations 1.21416 0.83759 1.06867 1.06171 1.20899 0.97168 0.83809 0.90270 1.22147 0.93892 0.99466 1.17018 1.18931 0.90425 0.87643 0.75314 1.90755 1.71725 1.35432 1.47662 1.22227 0.93199 0.96416 1.24496 1.18006 0.87483 0.83198 0.75802 1.90780 1.67488 1.36095 1.51784 1.45850 1.07997 1.07661 1.75539 1.21297 0.79211 0.98001 1.00680 1.21954 0.97506 0.92956 1.03749 1.21788 0.94402 0.97513 1.01097 1.21292 0.94648 0.91285 0.88394 0.94979 1.22586 0.94150 0.98002 1.00748 1.22762 0.99164 0.98486 0.96417 1.22013 0.87941 0.96048 0.95795 1.44749 1.01337 1.65026 1.23574 1.18631 0.90847 0.91471 1.35834 0.91695 1.26408 0.95970 1.00523 0.97616 1.69851 1.21710 1.22664 1.44793 0.85773 0.78274 0.79104 0.79409 1.21652 1.23858 1.17561 1.22619 0.83174 0.99539 0.86283 1.43193 1.04858 1.09154 1.56609 1.23129 0.98519 0.82136 1.06984 0.86955 0.87078 0.88127 0.82378 0.75443 0.93876 0.92161 0.91446 0.90529 0.93455 0.90620 0.90161 0.89344 0.88817 0.92308 0.96255 0.95350 0.92933 0.78108 0.87304 0.87258 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.17 9.38 71.23 0.67 0.50 16 2 C 0.19 2.27 6.64 41.20 0.27 2.54 16 3 C -0.30 -6.88 9.57 22.34 0.21 -6.67 16 4 C 0.38 13.74 6.96 25.44 0.18 13.92 16 5 O -0.57 -27.27 16.41 13.54 0.22 -27.04 16 6 C -0.35 -10.91 6.05 -18.63 -0.11 -11.02 16 7 C 0.57 21.57 7.77 86.62 0.67 22.24 16 8 O -0.58 -28.83 15.57 15.07 0.23 -28.59 16 9 N -0.72 -22.52 5.51 -466.51 -2.57 -25.09 16 10 C 0.13 4.43 5.67 86.38 0.49 4.92 16 11 C -0.12 -4.19 4.89 30.59 0.15 -4.04 16 12 C -0.11 -3.56 4.70 30.59 0.14 -3.41 16 13 C 0.15 5.34 3.20 45.34 0.15 5.48 16 14 H 0.03 1.21 8.10 -2.38 -0.02 1.19 16 15 C -0.12 -3.30 6.48 31.78 0.21 -3.10 16 16 C -0.13 -4.01 7.08 31.99 0.23 -3.78 16 17 C 0.11 4.25 6.17 86.86 0.54 4.79 16 18 N -0.62 -27.36 2.41 -668.23 -1.61 -28.97 16 19 C -0.24 -12.39 9.34 84.03 0.79 -11.60 16 20 H 0.07 3.62 5.23 -2.91 -0.02 3.61 16 21 C -0.01 -0.42 5.50 84.87 0.47 0.05 16 22 N -0.95 -54.52 13.97 21.65 0.30 -54.22 16 23 Si 0.94 44.57 25.05 68.60 1.72 46.29 16 24 H -0.29 -13.61 6.93 99.48 0.69 -12.92 16 25 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.25 -11.23 6.42 99.48 0.64 -10.59 16 27 C 0.22 3.80 9.80 84.25 0.83 4.63 16 28 N -0.46 -4.75 2.97 -532.77 -1.58 -6.33 16 29 C 0.03 0.00 9.97 127.77 1.27 1.28 16 30 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 31 H 0.11 -0.41 5.93 -2.39 -0.01 -0.43 16 32 H 0.10 0.12 8.00 -2.39 -0.02 0.10 16 33 H 0.16 3.18 8.02 -2.91 -0.02 3.15 16 34 H 0.41 10.01 6.55 -92.71 -0.61 9.40 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 38 H 0.08 3.12 4.49 -2.39 -0.01 3.11 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 2.05 7.86 -2.39 -0.02 2.03 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.06 1.88 7.53 -2.39 -0.02 1.86 16 45 H 0.02 0.84 4.37 -2.38 -0.01 0.83 16 46 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 48 H 0.20 2.17 6.28 -2.91 -0.02 2.15 16 49 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 50 H 0.11 -0.06 7.86 -2.38 -0.02 -0.08 16 51 H 0.12 -0.56 5.92 -2.39 -0.01 -0.57 16 Total: -1.00 -94.61 397.36 4.12 -90.49 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.26 Total: 16.74 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.14 Total: 16.72 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.46 Total: -114.61 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: 0.46 Total: -55.64 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.72 Total: 46.29 kcal Total: -94.61 4.12 -90.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267168463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.464 kcal (2) G-P(sol) polarization free energy of solvation -94.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds