Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34867 * 119.10441 * 2 1 4 4 C 1.41664 * 119.33997 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06507 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86557 * 0.02562 * 4 3 2 7 7 C 1.47284 * 120.88300 * 179.97438 * 6 4 3 8 8 O 1.21616 * 120.00056 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00066 * 180.27192 * 7 6 4 10 10 C 1.46505 * 120.00084 * 179.72390 * 9 7 6 11 11 C 1.53001 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46796 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47251 * 185.21512 * 12 11 10 14 14 H 1.09002 * 109.87069 * 58.64503 * 13 12 11 15 15 C 1.54326 * 109.87988 * 297.63888 * 13 12 11 16 16 C 1.55161 * 102.93957 * 218.38802 * 15 13 12 17 17 C 1.54911 * 101.58056 * 35.49926 * 16 15 13 18 18 N 1.47016 * 109.88504 * 179.67017 * 13 12 11 19 19 C 1.36944 * 125.64191 * 298.31023 * 18 13 12 20 20 H 1.07993 * 120.00417 * 347.88538 * 19 18 13 21 21 C 1.38815 * 119.99585 * 167.89081 * 19 18 13 22 22 N 1.31621 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00014 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46831 * 89.99926 * 23 21 19 25 25 H 1.48494 * 109.47207 * 209.99681 * 23 21 19 26 26 H 1.48501 * 109.46907 * 330.00100 * 23 21 19 27 27 C 1.37992 * 118.23492 * 0.25078 * 6 4 3 28 28 N 1.34342 * 120.37103 * 359.51129 * 27 6 4 29 29 C 1.46500 * 118.80744 * 180.24270 * 28 27 6 30 30 H 1.09000 * 109.47156 * 95.92686 * 1 2 3 31 31 H 1.09003 * 109.47146 * 215.92689 * 1 2 3 32 32 H 1.09005 * 109.46743 * 335.92429 * 1 2 3 33 33 H 1.08002 * 120.32621 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99876 * 359.73299 * 9 7 6 35 35 H 1.08998 * 109.47243 * 300.00371 * 10 9 7 36 36 H 1.08997 * 109.46564 * 60.00856 * 10 9 7 37 37 H 1.08998 * 109.47214 * 300.00096 * 11 10 9 38 38 H 1.09001 * 109.47379 * 60.00498 * 11 10 9 39 39 H 1.08993 * 109.47578 * 305.21334 * 12 11 10 40 40 H 1.08999 * 109.47311 * 65.21529 * 12 11 10 41 41 H 1.09004 * 110.71834 * 336.74593 * 15 13 12 42 42 H 1.08996 * 110.72210 * 100.02308 * 15 13 12 43 43 H 1.09000 * 111.00160 * 153.57336 * 16 15 13 44 44 H 1.09001 * 111.00499 * 277.38683 * 16 15 13 45 45 H 1.09002 * 110.36374 * 81.83238 * 17 16 15 46 46 H 1.08997 * 110.36518 * 204.15132 * 17 16 15 47 47 H 0.97001 * 120.00563 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.81676 * 179.74923 * 27 6 4 49 49 H 1.08996 * 109.47406 * 263.97472 * 29 28 27 50 50 H 1.08996 * 109.46936 * 23.97127 * 29 28 27 51 51 H 1.09004 * 109.47112 * 143.96999 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1842 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2725 -0.1134 -0.0017 7 6 5.7436 -0.1849 -0.0029 8 8 6.4021 0.8376 -0.0025 9 7 6.3600 -1.3833 -0.0094 10 6 7.8233 -1.4544 -0.0167 11 6 8.2627 -2.9200 -0.0239 12 6 9.7908 -2.9942 -0.0309 13 6 10.2300 -4.4533 -0.1691 14 1 9.8254 -4.8765 -1.0886 15 6 9.7357 -5.2675 1.0452 16 6 10.9203 -6.2300 1.3236 17 6 12.1363 -5.3351 0.9768 18 7 11.6979 -4.5344 -0.1848 19 6 12.5187 -3.9629 -1.1201 20 1 12.1019 -3.5650 -2.0334 21 6 13.8867 -3.8951 -0.8942 22 7 14.3947 -4.3797 0.2191 23 14 15.0066 -3.1162 -2.1703 24 1 15.1397 -1.6637 -1.8914 25 1 16.3452 -3.7563 -2.1109 26 1 14.4251 -3.3093 -3.5231 27 6 3.5076 -1.2619 -0.0075 28 7 2.1664 -1.1848 -0.0020 29 6 1.3879 -2.4258 -0.0030 30 1 -0.3633 -0.1061 -1.0222 31 1 -0.3633 -0.8322 0.6030 32 1 -0.3633 0.9383 0.4193 33 1 1.6137 2.1083 -0.0004 34 1 5.8348 -2.1989 -0.0095 35 1 8.2069 -0.9561 -0.9071 36 1 8.2153 -0.9616 0.8729 37 1 7.8791 -3.4186 0.8662 38 1 7.8706 -3.4125 -0.9137 39 1 10.1788 -2.4170 -0.8701 40 1 10.1788 -2.5848 0.9019 41 1 9.5593 -4.6154 1.9007 42 1 8.8350 -5.8272 0.7933 43 1 10.9421 -6.5299 2.3714 44 1 10.8772 -7.1018 0.6707 45 1 12.3806 -4.6849 1.8169 46 1 12.9957 -5.9498 0.7095 47 1 15.3506 -4.3320 0.3771 48 1 3.9898 -2.2282 -0.0125 49 1 1.0995 -2.6730 -1.0246 50 1 1.9919 -3.2339 0.4096 51 1 0.4931 -2.2939 0.6054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267168465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = -16.255720 kcal Electronic energy + Delta-G solvation = -29821.036470 eV Core-core repulsion = 25721.484789 eV Total energy + Delta-G solvation = -4099.551681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61089 -39.40240 -38.04952 -37.72705 -35.31092 -34.02102 -33.22727 -32.66570 -31.94911 -29.45097 -28.96851 -27.64668 -27.36022 -24.95718 -24.54892 -23.88079 -22.08284 -21.45755 -20.78400 -20.08683 -19.12578 -18.36998 -17.95189 -16.73467 -16.58891 -16.54879 -16.09426 -15.63702 -15.45196 -15.01716 -14.78739 -14.41193 -14.26932 -14.04518 -13.90505 -13.82016 -13.62745 -13.54155 -13.35955 -12.93536 -12.80096 -12.45414 -12.35312 -12.23279 -12.00744 -11.87823 -11.63395 -11.38614 -10.99639 -10.78932 -10.69907 -10.51490 -10.08413 -10.03103 -9.96071 -9.91212 -9.75045 -9.57780 -9.56764 -9.31536 -8.99931 -8.53963 -8.28745 -6.73787 -5.68105 -3.02895 0.49765 0.93209 1.87749 2.90323 3.12649 3.44216 3.49819 3.50642 3.58130 3.67630 3.92298 4.04125 4.24722 4.34010 4.53850 4.57071 4.66669 4.68411 4.76660 4.93132 5.09898 5.13489 5.24031 5.30209 5.38092 5.41807 5.49308 5.62622 5.67416 5.76614 5.89250 5.96317 6.03745 6.09661 6.13452 6.19461 6.30351 6.34566 6.37310 6.45942 6.50516 6.60467 6.73230 6.75540 7.00052 7.21450 7.53271 7.60597 7.66713 7.85932 7.95240 8.34750 8.36182 9.25897 9.87826 10.56435 11.43668 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.001891 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.134605 B =14807.035513 C =15981.797393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 C -0.267 4.267 4 C 0.406 3.594 5 O -0.477 6.477 6 C -0.296 4.296 7 C 0.567 3.433 8 O -0.509 6.509 9 N -0.734 5.734 10 C 0.120 3.880 11 C -0.126 4.126 12 C -0.122 4.122 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.124 4.124 16 C -0.150 4.150 17 C 0.170 3.830 18 N -0.597 5.597 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.172 3.828 28 N -0.472 5.472 29 C 0.048 3.952 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.389 0.611 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.074 0.926 47 H 0.252 0.748 48 H 0.167 0.833 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.308 -1.675 1.676 34.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.291 4.291 4 C 0.291 3.709 5 O -0.358 6.358 6 C -0.307 4.307 7 C 0.354 3.646 8 O -0.383 6.383 9 N -0.388 5.388 10 C -0.003 4.003 11 C -0.164 4.164 12 C -0.163 4.163 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.046 3.954 18 N -0.321 5.321 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.042 3.958 28 N -0.159 5.159 29 C -0.093 4.093 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.184 0.816 49 H 0.101 0.899 50 H 0.113 0.887 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -33.332 -0.470 1.640 33.376 hybrid contribution 0.349 -0.139 -0.614 0.719 sum -32.983 -0.609 1.026 33.005 Atomic orbital electron populations 1.21191 0.88004 1.05100 1.04133 1.20270 0.94882 0.84955 0.95133 1.22304 0.96318 0.97246 1.13246 1.18169 0.88256 0.87931 0.76509 1.90843 1.69915 1.33207 1.41817 1.22593 0.94443 0.95182 1.18448 1.17505 0.86103 0.83721 0.77279 1.90876 1.65831 1.33930 1.47709 1.46016 1.08246 1.07436 1.77078 1.21488 0.78133 0.97966 1.02703 1.21830 0.98671 0.94103 1.01820 1.22029 0.91408 1.00234 1.02594 1.20915 0.86409 0.92132 0.95065 0.95246 1.22587 0.97283 0.97961 0.98336 1.23012 0.98094 0.98324 0.99475 1.21507 0.93209 0.91615 0.89102 1.44621 0.99131 1.59849 1.28505 1.18977 0.88052 1.31623 0.96550 0.90731 1.24861 0.97099 1.01122 0.97332 1.69930 1.11518 1.50413 1.24839 0.86165 0.80225 0.79070 0.80607 1.21526 1.21764 1.20699 1.22213 0.82179 0.99874 0.91581 1.42551 1.05270 1.07259 1.60847 1.22559 0.97895 0.84314 1.04580 0.89296 0.90100 0.88831 0.82995 0.77680 0.91349 0.91397 0.91787 0.91888 0.91773 0.92078 0.92040 0.92738 0.92607 0.92520 0.96043 0.90771 0.93785 0.81589 0.89866 0.88703 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.12 9.34 36.00 0.34 0.21 16 2 C 0.15 0.78 6.64 -82.13 -0.55 0.23 16 3 C -0.27 -2.42 9.57 -39.47 -0.38 -2.80 16 4 C 0.41 5.80 6.96 -34.68 -0.24 5.56 16 5 O -0.48 -9.40 16.41 -15.18 -0.25 -9.65 16 6 C -0.30 -3.53 6.05 -102.72 -0.62 -4.15 16 7 C 0.57 8.62 7.77 -12.58 -0.10 8.52 16 8 O -0.51 -10.65 15.57 -14.75 -0.23 -10.88 16 9 N -0.73 -8.55 5.51 -61.43 -0.34 -8.89 16 10 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 11 C -0.13 -1.63 5.03 -26.73 -0.13 -1.76 16 12 C -0.12 -2.18 4.67 -26.73 -0.12 -2.31 16 13 C 0.16 3.22 3.21 -66.95 -0.22 3.00 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.06 5.52 -24.89 -0.14 -2.20 16 16 C -0.15 -2.81 7.09 -24.58 -0.17 -2.98 16 17 C 0.17 4.14 5.48 -2.36 -0.01 4.13 16 18 N -0.60 -15.04 3.14 -162.32 -0.51 -15.55 16 19 C -0.22 -6.21 9.82 -15.05 -0.15 -6.36 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 22 N -0.92 -27.26 10.50 55.49 0.58 -26.67 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.17 1.04 9.80 -16.54 -0.16 0.88 16 28 N -0.47 -1.85 2.97 -119.75 -0.36 -2.20 16 29 C 0.05 -0.03 9.97 59.85 0.60 0.57 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 -0.08 6.01 -51.93 -0.31 -0.39 16 32 H 0.09 0.07 7.97 -51.93 -0.41 -0.35 16 33 H 0.15 1.17 8.01 -52.49 -0.42 0.75 16 34 H 0.39 2.86 6.55 -40.82 -0.27 2.59 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 40 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 41 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.57 8.12 -51.93 -0.42 0.14 16 46 H 0.07 2.02 6.75 -51.93 -0.35 1.66 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.17 0.37 6.28 -52.49 -0.33 0.04 16 49 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 50 H 0.09 -0.19 7.86 -51.93 -0.41 -0.60 16 51 H 0.09 -0.20 5.95 -51.93 -0.31 -0.51 16 LS Contribution 407.13 15.07 6.14 6.14 Total: -1.00 -41.35 407.13 -10.37 -51.72 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.20 Total: -3.35 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.18 Total: 1.87 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.62 Total: -53.32 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.48 Total: -20.53 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -41.35 -10.37 -51.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267168465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.464 kcal (2) G-P(sol) polarization free energy of solvation -41.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds