Wall clock time and date at job start Wed Apr 1 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34867 * 119.10441 * 2 1 4 4 C 1.41664 * 119.33997 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06507 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86557 * 0.02562 * 4 3 2 7 7 C 1.47284 * 120.88300 * 179.97438 * 6 4 3 8 8 O 1.21616 * 120.00056 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00066 * 180.27192 * 7 6 4 10 10 C 1.46505 * 120.00084 * 179.72390 * 9 7 6 11 11 C 1.53001 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46796 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47251 * 185.21512 * 12 11 10 14 14 H 1.09002 * 109.87069 * 58.64503 * 13 12 11 15 15 C 1.54326 * 109.87988 * 297.63888 * 13 12 11 16 16 C 1.55161 * 102.93957 * 218.38802 * 15 13 12 17 17 C 1.54911 * 101.58056 * 35.49926 * 16 15 13 18 18 N 1.47016 * 109.88504 * 179.67017 * 13 12 11 19 19 C 1.36944 * 125.64191 * 298.31023 * 18 13 12 20 20 H 1.07993 * 120.00417 * 347.88538 * 19 18 13 21 21 C 1.38815 * 119.99585 * 167.89081 * 19 18 13 22 22 N 1.31621 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00014 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46831 * 89.99926 * 23 21 19 25 25 H 1.48494 * 109.47207 * 209.99681 * 23 21 19 26 26 H 1.48501 * 109.46907 * 330.00100 * 23 21 19 27 27 C 1.37992 * 118.23492 * 0.25078 * 6 4 3 28 28 N 1.34342 * 120.37103 * 359.51129 * 27 6 4 29 29 C 1.46500 * 118.80744 * 180.24270 * 28 27 6 30 30 H 1.09000 * 109.47156 * 95.92686 * 1 2 3 31 31 H 1.09003 * 109.47146 * 215.92689 * 1 2 3 32 32 H 1.09005 * 109.46743 * 335.92429 * 1 2 3 33 33 H 1.08002 * 120.32621 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99876 * 359.73299 * 9 7 6 35 35 H 1.08998 * 109.47243 * 300.00371 * 10 9 7 36 36 H 1.08997 * 109.46564 * 60.00856 * 10 9 7 37 37 H 1.08998 * 109.47214 * 300.00096 * 11 10 9 38 38 H 1.09001 * 109.47379 * 60.00498 * 11 10 9 39 39 H 1.08993 * 109.47578 * 305.21334 * 12 11 10 40 40 H 1.08999 * 109.47311 * 65.21529 * 12 11 10 41 41 H 1.09004 * 110.71834 * 336.74593 * 15 13 12 42 42 H 1.08996 * 110.72210 * 100.02308 * 15 13 12 43 43 H 1.09000 * 111.00160 * 153.57336 * 16 15 13 44 44 H 1.09001 * 111.00499 * 277.38683 * 16 15 13 45 45 H 1.09002 * 110.36374 * 81.83238 * 17 16 15 46 46 H 1.08997 * 110.36518 * 204.15132 * 17 16 15 47 47 H 0.97001 * 120.00563 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.81676 * 179.74923 * 27 6 4 49 49 H 1.08996 * 109.47406 * 263.97472 * 29 28 27 50 50 H 1.08996 * 109.46936 * 23.97127 * 29 28 27 51 51 H 1.09004 * 109.47112 * 143.96999 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1842 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2725 -0.1134 -0.0017 7 6 5.7436 -0.1849 -0.0029 8 8 6.4021 0.8376 -0.0025 9 7 6.3600 -1.3833 -0.0094 10 6 7.8233 -1.4544 -0.0167 11 6 8.2627 -2.9200 -0.0239 12 6 9.7908 -2.9942 -0.0309 13 6 10.2300 -4.4533 -0.1691 14 1 9.8254 -4.8765 -1.0886 15 6 9.7357 -5.2675 1.0452 16 6 10.9203 -6.2300 1.3236 17 6 12.1363 -5.3351 0.9768 18 7 11.6979 -4.5344 -0.1848 19 6 12.5187 -3.9629 -1.1201 20 1 12.1019 -3.5650 -2.0334 21 6 13.8867 -3.8951 -0.8942 22 7 14.3947 -4.3797 0.2191 23 14 15.0066 -3.1162 -2.1703 24 1 15.1397 -1.6637 -1.8914 25 1 16.3452 -3.7563 -2.1109 26 1 14.4251 -3.3093 -3.5231 27 6 3.5076 -1.2619 -0.0075 28 7 2.1664 -1.1848 -0.0020 29 6 1.3879 -2.4258 -0.0030 30 1 -0.3633 -0.1061 -1.0222 31 1 -0.3633 -0.8322 0.6030 32 1 -0.3633 0.9383 0.4193 33 1 1.6137 2.1083 -0.0004 34 1 5.8348 -2.1989 -0.0095 35 1 8.2069 -0.9561 -0.9071 36 1 8.2153 -0.9616 0.8729 37 1 7.8791 -3.4186 0.8662 38 1 7.8706 -3.4125 -0.9137 39 1 10.1788 -2.4170 -0.8701 40 1 10.1788 -2.5848 0.9019 41 1 9.5593 -4.6154 1.9007 42 1 8.8350 -5.8272 0.7933 43 1 10.9421 -6.5299 2.3714 44 1 10.8772 -7.1018 0.6707 45 1 12.3806 -4.6849 1.8169 46 1 12.9957 -5.9498 0.7095 47 1 15.3506 -4.3320 0.3771 48 1 3.9898 -2.2282 -0.0125 49 1 1.0995 -2.6730 -1.0246 50 1 1.9919 -3.2339 0.4096 51 1 0.4931 -2.2939 0.6054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267168465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:11 Heat of formation + Delta-G solvation = -46.151072 kcal Electronic energy + Delta-G solvation = -29822.332829 eV Core-core repulsion = 25721.484789 eV Total energy + Delta-G solvation = -4100.848041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22392 -40.45137 -39.44343 -38.90913 -36.60235 -34.85280 -34.41847 -33.86292 -33.16476 -31.23710 -29.92957 -28.64869 -27.65569 -26.62498 -25.71052 -25.02646 -23.02662 -22.56569 -21.83383 -21.67994 -20.68744 -19.16842 -18.73077 -18.51810 -17.25916 -17.08636 -16.96947 -16.80839 -16.69045 -16.49657 -16.00156 -15.69934 -15.53410 -15.40286 -14.80880 -14.60325 -14.31007 -14.20425 -13.88856 -13.84055 -13.80481 -13.67766 -13.55205 -13.32117 -13.10299 -12.97806 -12.74829 -12.68031 -12.62778 -12.50625 -12.23912 -11.99420 -11.81246 -11.65797 -11.50230 -11.28355 -11.19823 -11.10363 -10.66234 -10.51370 -10.33995 -10.11903 -9.06326 -8.77799 -7.84015 -5.18895 -0.20958 0.32761 1.42870 1.45567 1.47624 1.52819 1.88082 2.12683 2.49896 2.78096 3.23096 3.33724 3.59763 3.63061 3.71953 3.81421 3.96747 4.03127 4.16552 4.23257 4.25491 4.29466 4.38939 4.45153 4.46059 4.49481 4.63940 4.72996 4.73922 4.82017 4.84215 4.85575 4.88828 4.89243 5.01981 5.06222 5.16687 5.17373 5.27358 5.31898 5.35968 5.42602 5.52036 5.55314 5.71046 5.71863 5.73764 5.79594 5.82674 6.29068 6.63328 7.09470 7.13768 7.35010 7.84143 8.50457 9.26703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.001891 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.134605 B =14807.035513 C =15981.797393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.188 3.812 3 C -0.306 4.306 4 C 0.378 3.622 5 O -0.573 6.573 6 C -0.356 4.356 7 C 0.563 3.437 8 O -0.587 6.587 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.103 4.103 12 C -0.115 4.115 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.109 4.109 16 C -0.137 4.137 17 C 0.170 3.830 18 N -0.620 5.620 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.950 5.950 23 Si 0.969 3.031 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.227 3.773 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.416 0.584 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.065 0.935 45 H -0.013 1.013 46 H 0.034 0.966 47 H 0.245 0.755 48 H 0.220 0.780 49 H 0.105 0.895 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.080 -6.347 1.471 40.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 C -0.329 4.329 4 C 0.271 3.729 5 O -0.462 6.462 6 C -0.366 4.366 7 C 0.352 3.648 8 O -0.467 6.467 9 N -0.364 5.364 10 C 0.001 3.999 11 C -0.141 4.141 12 C -0.155 4.155 13 C 0.046 3.954 14 H 0.057 0.943 15 C -0.147 4.147 16 C -0.175 4.175 17 C 0.045 3.955 18 N -0.345 5.345 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.798 3.202 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.092 3.908 28 N -0.138 5.138 29 C -0.108 4.108 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.169 0.831 34 H 0.254 0.746 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.005 0.995 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.236 0.764 49 H 0.123 0.877 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -39.241 -5.261 1.423 39.618 hybrid contribution 1.885 1.102 -0.564 2.255 sum -37.355 -4.160 0.860 37.596 Atomic orbital electron populations 1.21409 0.83970 1.06830 1.06096 1.20817 0.97031 0.83965 0.90134 1.22140 0.94027 0.99542 1.17200 1.19044 0.90453 0.88029 0.75326 1.90780 1.71818 1.35846 1.47728 1.22129 0.93001 0.96430 1.25068 1.18089 0.87550 0.83360 0.75764 1.90829 1.67668 1.36671 1.51539 1.45633 1.07232 1.07656 1.75872 1.21240 0.79570 0.98562 1.00510 1.21626 0.94553 0.93273 1.04630 1.21850 0.95167 0.98486 1.00029 1.21236 0.83365 0.93570 0.97260 0.94349 1.22595 0.97956 0.97248 0.96899 1.22876 0.95740 0.97725 1.01169 1.21325 0.94897 0.91442 0.87800 1.44948 1.01621 1.59915 1.27995 1.19303 0.88724 1.30413 0.97184 0.90631 1.25631 0.98682 1.02537 0.99367 1.70145 1.11093 1.52111 1.26603 0.85208 0.78278 0.77627 0.79072 1.21994 1.21978 1.19287 1.22725 0.82823 0.99590 0.85680 1.43239 1.05095 1.08985 1.56459 1.23165 0.98642 0.82046 1.06905 0.87142 0.86673 0.88591 0.83094 0.74572 0.93995 0.93726 0.88507 0.89203 0.94862 0.94497 0.91095 0.87856 0.90109 0.91641 0.99489 0.94738 0.94593 0.76404 0.87650 0.85942 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.44 9.34 71.23 0.67 1.10 16 2 C 0.19 1.23 6.64 41.20 0.27 1.51 16 3 C -0.31 -5.74 9.57 22.34 0.21 -5.52 16 4 C 0.38 11.98 6.96 25.44 0.18 12.15 16 5 O -0.57 -26.16 16.41 13.52 0.22 -25.94 16 6 C -0.36 -8.59 6.05 -18.63 -0.11 -8.70 16 7 C 0.56 18.00 7.77 86.62 0.67 18.67 16 8 O -0.59 -27.43 15.57 15.06 0.23 -27.19 16 9 N -0.71 -15.54 5.51 -466.51 -2.57 -18.11 16 10 C 0.13 3.49 5.67 86.38 0.49 3.98 16 11 C -0.10 -2.34 5.03 30.59 0.15 -2.18 16 12 C -0.11 -4.05 4.67 30.60 0.14 -3.91 16 13 C 0.15 5.72 3.21 45.35 0.15 5.86 16 14 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.11 -3.16 5.52 31.79 0.18 -2.99 16 16 C -0.14 -4.73 7.09 31.99 0.23 -4.51 16 17 C 0.17 8.46 5.48 86.80 0.48 8.93 16 18 N -0.62 -31.65 3.14 -667.46 -2.09 -33.74 16 19 C -0.23 -12.92 9.82 84.03 0.82 -12.09 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 21 C -0.07 -4.08 5.48 84.86 0.46 -3.62 16 22 N -0.95 -58.94 10.50 21.65 0.23 -58.71 16 23 Si 0.97 47.82 29.55 68.60 2.03 49.85 16 24 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.23 1.74 9.80 84.25 0.83 2.56 16 28 N -0.45 -0.99 2.97 -532.77 -1.58 -2.57 16 29 C 0.03 -0.29 9.97 127.77 1.27 0.98 16 30 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.12 -1.09 6.01 -2.39 -0.01 -1.10 16 32 H 0.10 -0.24 7.97 -2.38 -0.02 -0.26 16 33 H 0.15 2.64 8.01 -2.91 -0.02 2.61 16 34 H 0.42 4.14 6.55 -92.71 -0.61 3.53 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.66 7.38 -2.39 -0.02 1.64 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 40 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 41 H 0.07 1.95 7.68 -2.38 -0.02 1.94 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H -0.01 -0.71 8.12 -2.39 -0.02 -0.73 16 46 H 0.03 1.95 6.75 -2.39 -0.02 1.93 16 47 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 48 H 0.22 -0.68 6.28 -2.91 -0.02 -0.70 16 49 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 50 H 0.12 -1.64 7.86 -2.39 -0.02 -1.66 16 51 H 0.12 -1.55 5.95 -2.38 -0.01 -1.56 16 Total: -1.00 -110.24 407.13 3.88 -106.36 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: 0.33 Total: -2.19 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.09 Total: 12.24 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -6.02 Total: -113.13 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: 0.46 Total: -53.13 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -110.24 3.88 -106.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267168465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal (2) G-P(sol) polarization free energy of solvation -110.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds