Wall clock time and date at job start Wed Apr 1 2020 04:27:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.34867 * 119.10441 * 2 1
4 4 C 1.41664 * 119.33997 * 180.02562 * 3 2 1
5 5 O 1.22092 * 121.06507 * 179.97438 * 4 3 2
6 6 C 1.47099 * 117.86557 * 0.02562 * 4 3 2
7 7 C 1.47284 * 120.88300 * 179.97438 * 6 4 3
8 8 O 1.21616 * 120.00056 * 0.02562 * 7 6 4
9 9 N 1.34773 * 120.00066 * 180.27192 * 7 6 4
10 10 C 1.46505 * 120.00084 * 179.72390 * 9 7 6
11 11 C 1.53001 * 109.46945 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.46796 * 180.02562 * 11 10 9
13 13 C 1.53006 * 109.47251 * 185.21512 * 12 11 10
14 14 H 1.09002 * 109.87069 * 58.64503 * 13 12 11
15 15 C 1.54326 * 109.87988 * 297.63888 * 13 12 11
16 16 C 1.55161 * 102.93957 * 218.38802 * 15 13 12
17 17 C 1.54911 * 101.58056 * 35.49926 * 16 15 13
18 18 N 1.47016 * 109.88504 * 179.67017 * 13 12 11
19 19 C 1.36944 * 125.64191 * 298.31023 * 18 13 12
20 20 H 1.07993 * 120.00417 * 347.88538 * 19 18 13
21 21 C 1.38815 * 119.99585 * 167.89081 * 19 18 13
22 22 N 1.31621 * 120.00221 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 120.00014 * 179.97438 * 21 19 18
24 24 H 1.48499 * 109.46831 * 89.99926 * 23 21 19
25 25 H 1.48494 * 109.47207 * 209.99681 * 23 21 19
26 26 H 1.48501 * 109.46907 * 330.00100 * 23 21 19
27 27 C 1.37992 * 118.23492 * 0.25078 * 6 4 3
28 28 N 1.34342 * 120.37103 * 359.51129 * 27 6 4
29 29 C 1.46500 * 118.80744 * 180.24270 * 28 27 6
30 30 H 1.09000 * 109.47156 * 95.92686 * 1 2 3
31 31 H 1.09003 * 109.47146 * 215.92689 * 1 2 3
32 32 H 1.09005 * 109.46743 * 335.92429 * 1 2 3
33 33 H 1.08002 * 120.32621 * 359.97438 * 3 2 1
34 34 H 0.97002 * 119.99876 * 359.73299 * 9 7 6
35 35 H 1.08998 * 109.47243 * 300.00371 * 10 9 7
36 36 H 1.08997 * 109.46564 * 60.00856 * 10 9 7
37 37 H 1.08998 * 109.47214 * 300.00096 * 11 10 9
38 38 H 1.09001 * 109.47379 * 60.00498 * 11 10 9
39 39 H 1.08993 * 109.47578 * 305.21334 * 12 11 10
40 40 H 1.08999 * 109.47311 * 65.21529 * 12 11 10
41 41 H 1.09004 * 110.71834 * 336.74593 * 15 13 12
42 42 H 1.08996 * 110.72210 * 100.02308 * 15 13 12
43 43 H 1.09000 * 111.00160 * 153.57336 * 16 15 13
44 44 H 1.09001 * 111.00499 * 277.38683 * 16 15 13
45 45 H 1.09002 * 110.36374 * 81.83238 * 17 16 15
46 46 H 1.08997 * 110.36518 * 204.15132 * 17 16 15
47 47 H 0.97001 * 120.00563 * 180.02562 * 22 21 19
48 48 H 1.07998 * 119.81676 * 179.74923 * 27 6 4
49 49 H 1.08996 * 109.47406 * 263.97472 * 29 28 27
50 50 H 1.08996 * 109.46936 * 23.97127 * 29 28 27
51 51 H 1.09004 * 109.47112 * 143.96999 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1630 1.1784 0.0000
4 6 3.5796 1.1842 -0.0006
5 8 4.2053 2.2326 -0.0010
6 6 4.2725 -0.1134 -0.0017
7 6 5.7436 -0.1849 -0.0029
8 8 6.4021 0.8376 -0.0025
9 7 6.3600 -1.3833 -0.0094
10 6 7.8233 -1.4544 -0.0167
11 6 8.2627 -2.9200 -0.0239
12 6 9.7908 -2.9942 -0.0309
13 6 10.2300 -4.4533 -0.1691
14 1 9.8254 -4.8765 -1.0886
15 6 9.7357 -5.2675 1.0452
16 6 10.9203 -6.2300 1.3236
17 6 12.1363 -5.3351 0.9768
18 7 11.6979 -4.5344 -0.1848
19 6 12.5187 -3.9629 -1.1201
20 1 12.1019 -3.5650 -2.0334
21 6 13.8867 -3.8951 -0.8942
22 7 14.3947 -4.3797 0.2191
23 14 15.0066 -3.1162 -2.1703
24 1 15.1397 -1.6637 -1.8914
25 1 16.3452 -3.7563 -2.1109
26 1 14.4251 -3.3093 -3.5231
27 6 3.5076 -1.2619 -0.0075
28 7 2.1664 -1.1848 -0.0020
29 6 1.3879 -2.4258 -0.0030
30 1 -0.3633 -0.1061 -1.0222
31 1 -0.3633 -0.8322 0.6030
32 1 -0.3633 0.9383 0.4193
33 1 1.6137 2.1083 -0.0004
34 1 5.8348 -2.1989 -0.0095
35 1 8.2069 -0.9561 -0.9071
36 1 8.2153 -0.9616 0.8729
37 1 7.8791 -3.4186 0.8662
38 1 7.8706 -3.4125 -0.9137
39 1 10.1788 -2.4170 -0.8701
40 1 10.1788 -2.5848 0.9019
41 1 9.5593 -4.6154 1.9007
42 1 8.8350 -5.8272 0.7933
43 1 10.9421 -6.5299 2.3714
44 1 10.8772 -7.1018 0.6707
45 1 12.3806 -4.6849 1.8169
46 1 12.9957 -5.9498 0.7095
47 1 15.3506 -4.3320 0.3771
48 1 3.9898 -2.2282 -0.0125
49 1 1.0995 -2.6730 -1.0246
50 1 1.9919 -3.2339 0.4096
51 1 0.4931 -2.2939 0.6054
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267168465.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:11
Heat of formation + Delta-G solvation = -46.151072 kcal
Electronic energy + Delta-G solvation = -29822.332829 eV
Core-core repulsion = 25721.484789 eV
Total energy + Delta-G solvation = -4100.848041 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.22392 -40.45137 -39.44343 -38.90913 -36.60235 -34.85280 -34.41847 -33.86292
-33.16476 -31.23710 -29.92957 -28.64869 -27.65569 -26.62498 -25.71052 -25.02646
-23.02662 -22.56569 -21.83383 -21.67994 -20.68744 -19.16842 -18.73077 -18.51810
-17.25916 -17.08636 -16.96947 -16.80839 -16.69045 -16.49657 -16.00156 -15.69934
-15.53410 -15.40286 -14.80880 -14.60325 -14.31007 -14.20425 -13.88856 -13.84055
-13.80481 -13.67766 -13.55205 -13.32117 -13.10299 -12.97806 -12.74829 -12.68031
-12.62778 -12.50625 -12.23912 -11.99420 -11.81246 -11.65797 -11.50230 -11.28355
-11.19823 -11.10363 -10.66234 -10.51370 -10.33995 -10.11903 -9.06326 -8.77799
-7.84015 -5.18895 -0.20958 0.32761 1.42870 1.45567 1.47624 1.52819
1.88082 2.12683 2.49896 2.78096 3.23096 3.33724 3.59763 3.63061
3.71953 3.81421 3.96747 4.03127 4.16552 4.23257 4.25491 4.29466
4.38939 4.45153 4.46059 4.49481 4.63940 4.72996 4.73922 4.82017
4.84215 4.85575 4.88828 4.89243 5.01981 5.06222 5.16687 5.17373
5.27358 5.31898 5.35968 5.42602 5.52036 5.55314 5.71046 5.71863
5.73764 5.79594 5.82674 6.29068 6.63328 7.09470 7.13768 7.35010
7.84143 8.50457 9.26703
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016944 B = 0.001891 C = 0.001752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1652.134605 B =14807.035513 C =15981.797393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.188 3.812
3 C -0.306 4.306
4 C 0.378 3.622
5 O -0.573 6.573
6 C -0.356 4.356
7 C 0.563 3.437
8 O -0.587 6.587
9 N -0.709 5.709
10 C 0.125 3.875
11 C -0.103 4.103
12 C -0.115 4.115
13 C 0.152 3.848
14 H 0.039 0.961
15 C -0.109 4.109
16 C -0.137 4.137
17 C 0.170 3.830
18 N -0.620 5.620
19 C -0.227 4.227
20 H 0.076 0.924
21 C -0.069 4.069
22 N -0.950 5.950
23 Si 0.969 3.031
24 H -0.292 1.292
25 H -0.293 1.293
26 H -0.268 1.268
27 C 0.227 3.773
28 N -0.455 5.455
29 C 0.031 3.969
30 H 0.110 0.890
31 H 0.115 0.885
32 H 0.095 0.905
33 H 0.151 0.849
34 H 0.416 0.584
35 H 0.042 0.958
36 H 0.044 0.956
37 H 0.096 0.904
38 H 0.089 0.911
39 H 0.032 0.968
40 H 0.036 0.964
41 H 0.070 0.930
42 H 0.103 0.897
43 H 0.080 0.920
44 H 0.065 0.935
45 H -0.013 1.013
46 H 0.034 0.966
47 H 0.245 0.755
48 H 0.220 0.780
49 H 0.105 0.895
50 H 0.122 0.878
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -40.080 -6.347 1.471 40.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.081 3.919
3 C -0.329 4.329
4 C 0.271 3.729
5 O -0.462 6.462
6 C -0.366 4.366
7 C 0.352 3.648
8 O -0.467 6.467
9 N -0.364 5.364
10 C 0.001 3.999
11 C -0.141 4.141
12 C -0.155 4.155
13 C 0.046 3.954
14 H 0.057 0.943
15 C -0.147 4.147
16 C -0.175 4.175
17 C 0.045 3.955
18 N -0.345 5.345
19 C -0.356 4.356
20 H 0.094 0.906
21 C -0.262 4.262
22 N -0.600 5.600
23 Si 0.798 3.202
24 H -0.220 1.220
25 H -0.220 1.220
26 H -0.193 1.193
27 C 0.092 3.908
28 N -0.138 5.138
29 C -0.108 4.108
30 H 0.129 0.871
31 H 0.133 0.867
32 H 0.114 0.886
33 H 0.169 0.831
34 H 0.254 0.746
35 H 0.060 0.940
36 H 0.063 0.937
37 H 0.115 0.885
38 H 0.108 0.892
39 H 0.051 0.949
40 H 0.055 0.945
41 H 0.089 0.911
42 H 0.121 0.879
43 H 0.099 0.901
44 H 0.084 0.916
45 H 0.005 0.995
46 H 0.053 0.947
47 H 0.054 0.946
48 H 0.236 0.764
49 H 0.123 0.877
50 H 0.141 0.859
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -39.241 -5.261 1.423 39.618
hybrid contribution 1.885 1.102 -0.564 2.255
sum -37.355 -4.160 0.860 37.596
Atomic orbital electron populations
1.21409 0.83970 1.06830 1.06096 1.20817 0.97031 0.83965 0.90134
1.22140 0.94027 0.99542 1.17200 1.19044 0.90453 0.88029 0.75326
1.90780 1.71818 1.35846 1.47728 1.22129 0.93001 0.96430 1.25068
1.18089 0.87550 0.83360 0.75764 1.90829 1.67668 1.36671 1.51539
1.45633 1.07232 1.07656 1.75872 1.21240 0.79570 0.98562 1.00510
1.21626 0.94553 0.93273 1.04630 1.21850 0.95167 0.98486 1.00029
1.21236 0.83365 0.93570 0.97260 0.94349 1.22595 0.97956 0.97248
0.96899 1.22876 0.95740 0.97725 1.01169 1.21325 0.94897 0.91442
0.87800 1.44948 1.01621 1.59915 1.27995 1.19303 0.88724 1.30413
0.97184 0.90631 1.25631 0.98682 1.02537 0.99367 1.70145 1.11093
1.52111 1.26603 0.85208 0.78278 0.77627 0.79072 1.21994 1.21978
1.19287 1.22725 0.82823 0.99590 0.85680 1.43239 1.05095 1.08985
1.56459 1.23165 0.98642 0.82046 1.06905 0.87142 0.86673 0.88591
0.83094 0.74572 0.93995 0.93726 0.88507 0.89203 0.94862 0.94497
0.91095 0.87856 0.90109 0.91641 0.99489 0.94738 0.94593 0.76404
0.87650 0.85942 0.86300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 0.44 9.34 71.23 0.67 1.10 16
2 C 0.19 1.23 6.64 41.20 0.27 1.51 16
3 C -0.31 -5.74 9.57 22.34 0.21 -5.52 16
4 C 0.38 11.98 6.96 25.44 0.18 12.15 16
5 O -0.57 -26.16 16.41 13.52 0.22 -25.94 16
6 C -0.36 -8.59 6.05 -18.63 -0.11 -8.70 16
7 C 0.56 18.00 7.77 86.62 0.67 18.67 16
8 O -0.59 -27.43 15.57 15.06 0.23 -27.19 16
9 N -0.71 -15.54 5.51 -466.51 -2.57 -18.11 16
10 C 0.13 3.49 5.67 86.38 0.49 3.98 16
11 C -0.10 -2.34 5.03 30.59 0.15 -2.18 16
12 C -0.11 -4.05 4.67 30.60 0.14 -3.91 16
13 C 0.15 5.72 3.21 45.35 0.15 5.86 16
14 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
15 C -0.11 -3.16 5.52 31.79 0.18 -2.99 16
16 C -0.14 -4.73 7.09 31.99 0.23 -4.51 16
17 C 0.17 8.46 5.48 86.80 0.48 8.93 16
18 N -0.62 -31.65 3.14 -667.46 -2.09 -33.74 16
19 C -0.23 -12.92 9.82 84.03 0.82 -12.09 16
20 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16
21 C -0.07 -4.08 5.48 84.86 0.46 -3.62 16
22 N -0.95 -58.94 10.50 21.65 0.23 -58.71 16
23 Si 0.97 47.82 29.55 68.60 2.03 49.85 16
24 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16
25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16
26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
27 C 0.23 1.74 9.80 84.25 0.83 2.56 16
28 N -0.45 -0.99 2.97 -532.77 -1.58 -2.57 16
29 C 0.03 -0.29 9.97 127.77 1.27 0.98 16
30 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16
31 H 0.12 -1.09 6.01 -2.39 -0.01 -1.10 16
32 H 0.10 -0.24 7.97 -2.38 -0.02 -0.26 16
33 H 0.15 2.64 8.01 -2.91 -0.02 2.61 16
34 H 0.42 4.14 6.55 -92.71 -0.61 3.53 16
35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
37 H 0.10 1.66 7.38 -2.39 -0.02 1.64 16
38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
39 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16
40 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16
41 H 0.07 1.95 7.68 -2.38 -0.02 1.94 16
42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16
43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16
44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
45 H -0.01 -0.71 8.12 -2.39 -0.02 -0.73 16
46 H 0.03 1.95 6.75 -2.39 -0.02 1.93 16
47 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16
48 H 0.22 -0.68 6.28 -2.91 -0.02 -0.70 16
49 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16
50 H 0.12 -1.64 7.86 -2.39 -0.02 -1.66 16
51 H 0.12 -1.55 5.95 -2.38 -0.01 -1.56 16
Total: -1.00 -110.24 407.13 3.88 -106.36
By element:
Atomic # 1 Polarization: -2.52 SS G_CDS: 0.33 Total: -2.19 kcal
Atomic # 6 Polarization: 5.15 SS G_CDS: 7.09 Total: 12.24 kcal
Atomic # 7 Polarization: -107.11 SS G_CDS: -6.02 Total: -113.13 kcal
Atomic # 8 Polarization: -53.59 SS G_CDS: 0.46 Total: -53.13 kcal
Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal
Total: -110.24 3.88 -106.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267168465.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal
(2) G-P(sol) polarization free energy of solvation -110.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds