Wall clock time and date at job start Wed Apr 1 2020 04:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30004 * 127.33687 * 2 1 4 4 O 1.20661 * 112.30578 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15076 * 359.72377 * 4 3 2 6 6 C 1.50697 * 126.82597 * 180.30874 * 5 4 3 7 7 C 1.53001 * 117.50107 * 8.91212 * 6 5 4 8 8 C 1.52999 * 117.49908 * 300.25243 * 6 5 4 9 9 C 1.37359 * 106.34037 * 0.44343 * 5 4 3 10 10 C 1.47392 * 128.56168 * 179.85574 * 9 5 4 11 11 O 1.21612 * 120.00300 * 269.70384 * 10 9 5 12 12 N 1.34776 * 120.00266 * 89.70731 * 10 9 5 13 13 C 1.46495 * 120.00587 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47454 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47184 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47178 * 174.94943 * 15 14 13 17 17 H 1.09003 * 109.87403 * 306.25551 * 16 15 14 18 18 C 1.54320 * 109.88420 * 67.42901 * 16 15 14 19 19 C 1.55154 * 102.94149 * 141.61043 * 18 16 15 20 20 C 1.54906 * 101.58687 * 324.50004 * 19 18 16 21 21 N 1.47026 * 109.88345 * 185.24327 * 16 15 14 22 22 C 1.36933 * 125.65289 * 61.60512 * 21 16 15 23 23 H 1.08002 * 120.00144 * 14.67621 * 22 21 16 24 24 C 1.38812 * 120.00175 * 194.68277 * 22 21 16 25 25 N 1.31626 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00037 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47211 * 59.99846 * 26 24 22 28 28 H 1.48500 * 109.46997 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47329 * 299.99846 * 26 24 22 30 30 H 1.08993 * 109.47160 * 270.04093 * 1 2 3 31 31 H 1.08997 * 109.47049 * 30.04482 * 1 2 3 32 32 H 1.08996 * 109.47061 * 150.04036 * 1 2 3 33 33 H 1.08997 * 115.55041 * 154.58185 * 6 5 4 34 34 H 1.08997 * 117.49890 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.49564 * 145.02301 * 7 6 5 36 36 H 1.09004 * 117.50103 * 214.98654 * 8 6 5 37 37 H 1.09007 * 117.50049 * 359.97438 * 8 6 5 38 38 H 0.97003 * 119.99569 * 359.97438 * 12 10 9 39 39 H 1.09005 * 109.47150 * 59.99672 * 13 12 10 40 40 H 1.09000 * 109.46998 * 299.99934 * 13 12 10 41 41 H 1.09000 * 109.47079 * 300.00025 * 14 13 12 42 42 H 1.08995 * 109.47109 * 59.99807 * 14 13 12 43 43 H 1.09000 * 109.47576 * 294.94962 * 15 14 13 44 44 H 1.09007 * 109.47452 * 54.95016 * 15 14 13 45 45 H 1.08993 * 110.72079 * 259.97682 * 18 16 15 46 46 H 1.08999 * 110.71853 * 23.25037 * 18 16 15 47 47 H 1.08997 * 111.00686 * 206.42412 * 19 18 16 48 48 H 1.08999 * 111.03702 * 82.58842 * 19 18 16 49 49 H 1.08996 * 110.37000 * 278.17528 * 20 19 18 50 50 H 1.08996 * 110.37140 * 155.84467 * 20 19 18 51 51 H 0.96999 * 119.99735 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4609 0.7207 0.0005 5 6 3.6494 -0.6009 0.0068 6 6 4.9711 -1.3247 0.0157 7 6 6.2339 -0.4872 0.2281 8 6 5.9244 -1.0692 -1.1534 9 6 2.3991 -1.1697 0.0006 10 6 2.0401 -2.5992 0.0007 11 8 1.8927 -3.1893 -1.0524 12 7 1.8750 -3.2525 1.1679 13 6 1.5175 -4.6731 1.1682 14 6 1.3929 -5.1675 2.6107 15 6 1.0190 -6.6511 2.6109 16 6 1.0175 -7.1765 4.0478 17 1 1.9726 -6.9551 4.5243 18 6 -0.1331 -6.5253 4.8437 19 6 -0.6464 -7.6911 5.7294 20 6 -0.4663 -8.9038 4.7825 21 7 0.7826 -8.6279 4.0493 22 6 1.5897 -9.5676 3.4658 23 1 2.5913 -9.3041 3.1595 24 6 1.1205 -10.8589 3.2676 25 7 -0.1001 -11.1802 3.6411 26 14 2.2213 -12.1407 2.4709 27 1 3.4428 -12.3253 3.2949 28 1 1.4904 -13.4297 2.3743 29 1 2.6060 -11.6861 1.1105 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 4.9550 -2.3277 0.4419 34 1 6.1086 0.5874 0.3610 35 1 7.0485 -0.9395 0.7936 36 1 6.5356 -1.9041 -1.4963 37 1 5.5953 -0.3778 -1.9293 38 1 1.9929 -2.7819 2.0079 39 1 2.2922 -5.2428 0.6549 40 1 0.5661 -4.8085 0.6539 41 1 2.3446 -5.0322 3.1246 42 1 0.6185 -4.5980 3.1244 43 1 0.0267 -6.7758 2.1775 44 1 1.7460 -7.2092 2.0207 45 1 0.2391 -5.7074 5.4604 46 1 -0.9177 -6.1769 4.1720 47 1 -1.6956 -7.5513 5.9899 48 1 -0.0350 -7.8006 6.6250 49 1 -1.3053 -8.9724 4.0901 50 1 -0.3725 -9.8243 5.3586 51 1 -0.4278 -12.0826 3.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267171227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:10 Heat of formation + Delta-G solvation = 57.839430 kcal Electronic energy + Delta-G solvation = -30044.470648 eV Core-core repulsion = 25948.131974 eV Total energy + Delta-G solvation = -4096.338674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.21722 -39.74526 -37.89321 -37.81294 -35.59256 -34.89882 -33.02329 -32.32170 -31.84740 -29.42217 -29.15674 -28.19843 -25.56596 -24.59672 -24.03623 -23.53005 -22.88738 -21.57700 -20.93629 -20.15265 -19.84591 -19.17500 -18.25505 -17.99042 -16.91955 -16.73587 -16.33217 -16.03838 -15.57683 -15.05016 -14.81736 -14.35190 -14.27361 -13.87543 -13.80054 -13.73227 -13.63027 -13.32783 -12.87789 -12.50653 -12.35656 -12.08165 -12.06171 -11.94674 -11.84475 -11.74162 -11.57146 -11.48152 -11.04029 -10.94802 -10.82795 -10.76326 -10.58607 -10.40381 -10.20535 -10.10242 -9.99765 -9.77379 -9.62722 -9.62151 -9.54045 -9.24824 -8.56055 -6.75878 -5.73193 -3.08305 0.88996 1.56593 2.17956 2.39862 3.04159 3.26562 3.40270 3.45122 3.45795 3.71403 3.81399 4.20563 4.33484 4.37684 4.49729 4.56271 4.85241 4.95052 5.01671 5.10558 5.13667 5.14977 5.19204 5.26069 5.35000 5.39230 5.44598 5.49256 5.58356 5.58952 5.60143 5.67053 5.71788 5.83926 5.92029 5.99671 6.08430 6.23355 6.30917 6.34301 6.41841 6.56520 6.69778 6.72418 6.95132 7.16674 7.24819 7.55798 7.64517 7.81550 7.86768 7.93467 8.31189 9.22023 9.83689 10.53171 11.39157 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002095 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.730557 B =13364.135283 C =14454.428816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.052 3.948 6 C -0.096 4.096 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.245 4.245 10 C 0.597 3.403 11 O -0.522 6.522 12 N -0.716 5.716 13 C 0.117 3.883 14 C -0.127 4.127 15 C -0.122 4.122 16 C 0.162 3.838 17 H 0.031 0.969 18 C -0.124 4.124 19 C -0.151 4.151 20 C 0.173 3.827 21 N -0.596 5.596 22 C -0.227 4.227 23 H 0.073 0.927 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.024 0.976 50 H 0.068 0.932 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 23.908 -3.609 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.012 4.012 6 C -0.115 4.115 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.252 4.252 10 C 0.380 3.620 11 O -0.398 6.398 12 N -0.367 5.367 13 C -0.006 4.006 14 C -0.165 4.165 15 C -0.162 4.162 16 C 0.055 3.945 17 H 0.048 0.952 18 C -0.162 4.162 19 C -0.189 4.189 20 C 0.048 3.952 21 N -0.320 5.320 22 C -0.356 4.356 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.042 0.958 50 H 0.087 0.913 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.213 24.509 -4.424 25.668 hybrid contribution 0.389 -1.297 -0.119 1.360 sum 6.603 23.211 -4.543 24.556 Atomic orbital electron populations 1.20255 0.84968 1.04477 1.03967 1.24755 0.98629 0.86394 1.00771 1.73628 0.89003 1.23214 1.20329 1.84506 1.21571 1.22327 1.68109 1.23538 0.95508 0.83481 0.98630 1.20537 0.83989 0.99529 1.07485 1.23130 0.96763 1.00268 0.99615 1.23146 1.00416 1.03949 0.91727 1.21857 0.92493 0.95436 1.15398 1.16854 0.77143 0.83765 0.84231 1.90854 1.49872 1.67779 1.31295 1.46087 1.70412 1.12201 1.07981 1.21605 1.01348 0.78853 0.98758 1.21840 1.01954 0.98657 0.94097 1.22034 1.01877 0.91745 1.00561 1.20925 0.95443 0.85864 0.92280 0.95182 1.22586 0.98243 0.97171 0.98207 1.23012 0.99163 0.98060 0.98698 1.21403 0.88157 0.94031 0.91610 1.44536 1.25549 0.99210 1.62729 1.18905 0.94160 0.89838 1.32690 0.90897 1.24898 0.96302 0.98078 1.00888 1.69931 1.15780 1.19106 1.51661 0.86263 0.79465 0.80954 0.79466 1.21179 1.21631 1.21065 0.89438 0.89822 0.89581 0.84220 0.87582 0.87185 0.87074 0.87967 0.76409 0.91050 0.91122 0.91674 0.91646 0.92198 0.91563 0.92681 0.92050 0.92576 0.92511 0.95833 0.91321 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.49 36.01 0.38 -0.25 16 2 C 0.06 0.61 7.59 -79.77 -0.61 0.00 16 3 N -0.35 -4.04 12.01 34.78 0.42 -3.62 16 4 O 0.10 1.01 10.86 18.64 0.20 1.21 16 5 C 0.05 0.51 7.00 -34.63 -0.24 0.27 16 6 C -0.10 -0.73 6.14 -91.77 -0.56 -1.29 16 7 C -0.16 -0.87 10.19 -26.69 -0.27 -1.14 16 8 C -0.16 -0.97 10.24 -26.69 -0.27 -1.24 16 9 C -0.24 -2.73 6.24 -102.90 -0.64 -3.37 16 10 C 0.60 7.51 7.63 -12.53 -0.10 7.42 16 11 O -0.52 -8.68 17.11 5.27 0.09 -8.59 16 12 N -0.72 -7.49 5.55 -61.40 -0.34 -7.84 16 13 C 0.12 1.42 5.67 -4.04 -0.02 1.40 16 14 C -0.13 -1.54 5.10 -26.73 -0.14 -1.68 16 15 C -0.12 -2.07 4.72 -26.73 -0.13 -2.19 16 16 C 0.16 3.14 3.16 -66.95 -0.21 2.93 16 17 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 18 C -0.12 -2.05 5.71 -24.90 -0.14 -2.19 16 19 C -0.15 -2.78 7.08 -24.59 -0.17 -2.96 16 20 C 0.17 4.13 5.41 -2.53 -0.01 4.12 16 21 N -0.60 -14.70 3.13 -162.57 -0.51 -15.21 16 22 C -0.23 -6.17 9.71 -15.06 -0.15 -6.31 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.73 10.58 55.49 0.59 -26.14 16 26 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.55 8.02 -51.93 -0.42 0.14 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.40 3.23 8.46 -40.82 -0.35 2.89 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.72 7.64 -51.93 -0.40 0.32 16 43 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 44 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 50 H 0.07 1.84 6.93 -51.93 -0.36 1.48 16 51 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 420.53 15.07 6.34 6.34 Total: -1.00 -32.90 420.53 -10.25 -43.16 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.63 Total: 0.55 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.39 Total: -6.73 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.16 Total: -52.81 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.29 Total: -7.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.90 -10.25 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267171227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.996 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds