Wall clock time and date at job start Wed Apr 1 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30004 * 127.33687 * 2 1 4 4 O 1.20661 * 112.30578 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15076 * 359.72377 * 4 3 2 6 6 C 1.50697 * 126.82597 * 180.30874 * 5 4 3 7 7 C 1.53001 * 117.50107 * 8.91212 * 6 5 4 8 8 C 1.52999 * 117.49908 * 300.25243 * 6 5 4 9 9 C 1.37359 * 106.34037 * 0.44343 * 5 4 3 10 10 C 1.47392 * 128.56168 * 179.85574 * 9 5 4 11 11 O 1.21612 * 120.00300 * 269.70384 * 10 9 5 12 12 N 1.34776 * 120.00266 * 89.70731 * 10 9 5 13 13 C 1.46495 * 120.00587 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47454 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47184 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47178 * 174.94943 * 15 14 13 17 17 H 1.09003 * 109.87403 * 306.25551 * 16 15 14 18 18 C 1.54320 * 109.88420 * 67.42901 * 16 15 14 19 19 C 1.55154 * 102.94149 * 141.61043 * 18 16 15 20 20 C 1.54906 * 101.58687 * 324.50004 * 19 18 16 21 21 N 1.47026 * 109.88345 * 185.24327 * 16 15 14 22 22 C 1.36933 * 125.65289 * 61.60512 * 21 16 15 23 23 H 1.08002 * 120.00144 * 14.67621 * 22 21 16 24 24 C 1.38812 * 120.00175 * 194.68277 * 22 21 16 25 25 N 1.31626 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00037 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47211 * 59.99846 * 26 24 22 28 28 H 1.48500 * 109.46997 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47329 * 299.99846 * 26 24 22 30 30 H 1.08993 * 109.47160 * 270.04093 * 1 2 3 31 31 H 1.08997 * 109.47049 * 30.04482 * 1 2 3 32 32 H 1.08996 * 109.47061 * 150.04036 * 1 2 3 33 33 H 1.08997 * 115.55041 * 154.58185 * 6 5 4 34 34 H 1.08997 * 117.49890 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.49564 * 145.02301 * 7 6 5 36 36 H 1.09004 * 117.50103 * 214.98654 * 8 6 5 37 37 H 1.09007 * 117.50049 * 359.97438 * 8 6 5 38 38 H 0.97003 * 119.99569 * 359.97438 * 12 10 9 39 39 H 1.09005 * 109.47150 * 59.99672 * 13 12 10 40 40 H 1.09000 * 109.46998 * 299.99934 * 13 12 10 41 41 H 1.09000 * 109.47079 * 300.00025 * 14 13 12 42 42 H 1.08995 * 109.47109 * 59.99807 * 14 13 12 43 43 H 1.09000 * 109.47576 * 294.94962 * 15 14 13 44 44 H 1.09007 * 109.47452 * 54.95016 * 15 14 13 45 45 H 1.08993 * 110.72079 * 259.97682 * 18 16 15 46 46 H 1.08999 * 110.71853 * 23.25037 * 18 16 15 47 47 H 1.08997 * 111.00686 * 206.42412 * 19 18 16 48 48 H 1.08999 * 111.03702 * 82.58842 * 19 18 16 49 49 H 1.08996 * 110.37000 * 278.17528 * 20 19 18 50 50 H 1.08996 * 110.37140 * 155.84467 * 20 19 18 51 51 H 0.96999 * 119.99735 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4609 0.7207 0.0005 5 6 3.6494 -0.6009 0.0068 6 6 4.9711 -1.3247 0.0157 7 6 6.2339 -0.4872 0.2281 8 6 5.9244 -1.0692 -1.1534 9 6 2.3991 -1.1697 0.0006 10 6 2.0401 -2.5992 0.0007 11 8 1.8927 -3.1893 -1.0524 12 7 1.8750 -3.2525 1.1679 13 6 1.5175 -4.6731 1.1682 14 6 1.3929 -5.1675 2.6107 15 6 1.0190 -6.6511 2.6109 16 6 1.0175 -7.1765 4.0478 17 1 1.9726 -6.9551 4.5243 18 6 -0.1331 -6.5253 4.8437 19 6 -0.6464 -7.6911 5.7294 20 6 -0.4663 -8.9038 4.7825 21 7 0.7826 -8.6279 4.0493 22 6 1.5897 -9.5676 3.4658 23 1 2.5913 -9.3041 3.1595 24 6 1.1205 -10.8589 3.2676 25 7 -0.1001 -11.1802 3.6411 26 14 2.2213 -12.1407 2.4709 27 1 3.4428 -12.3253 3.2949 28 1 1.4904 -13.4297 2.3743 29 1 2.6060 -11.6861 1.1105 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 4.9550 -2.3277 0.4419 34 1 6.1086 0.5874 0.3610 35 1 7.0485 -0.9395 0.7936 36 1 6.5356 -1.9041 -1.4963 37 1 5.5953 -0.3778 -1.9293 38 1 1.9929 -2.7819 2.0079 39 1 2.2922 -5.2428 0.6549 40 1 0.5661 -4.8085 0.6539 41 1 2.3446 -5.0322 3.1246 42 1 0.6185 -4.5980 3.1244 43 1 0.0267 -6.7758 2.1775 44 1 1.7460 -7.2092 2.0207 45 1 0.2391 -5.7074 5.4604 46 1 -0.9177 -6.1769 4.1720 47 1 -1.6956 -7.5513 5.9899 48 1 -0.0350 -7.8006 6.6250 49 1 -1.3053 -8.9724 4.0901 50 1 -0.3725 -9.8243 5.3586 51 1 -0.4278 -12.0826 3.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267171227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:09 Heat of formation + Delta-G solvation = 38.731253 kcal Electronic energy + Delta-G solvation = -30045.299241 eV Core-core repulsion = 25948.131974 eV Total energy + Delta-G solvation = -4097.167267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.01118 -40.77099 -39.44767 -38.37946 -36.74528 -35.69227 -34.67945 -33.72102 -32.75657 -31.22606 -29.91508 -29.51393 -26.82555 -26.30122 -24.92926 -24.52841 -23.34250 -22.71634 -21.89326 -21.85335 -20.79499 -20.53033 -19.11068 -18.82735 -18.64643 -17.62058 -17.22888 -17.01261 -16.87837 -16.50629 -16.05177 -15.71731 -15.49479 -15.23738 -14.81210 -14.38058 -14.32289 -14.29816 -14.00621 -13.85083 -13.68135 -13.57228 -13.15468 -13.07043 -12.99062 -12.72508 -12.65991 -12.58223 -12.46285 -12.24072 -12.20062 -12.03115 -11.82815 -11.70276 -11.55171 -11.46536 -11.37990 -11.28529 -11.11003 -11.01784 -10.62691 -10.28034 -10.24851 -8.75496 -7.83724 -5.19216 0.12685 0.76886 1.21392 1.45380 1.47938 1.53870 1.61288 2.15003 2.51361 2.74576 3.02526 3.10310 3.34858 3.56373 3.66379 3.72179 3.82695 3.92284 3.97137 4.02606 4.12924 4.18263 4.27394 4.36548 4.37812 4.44155 4.48602 4.55708 4.64309 4.65727 4.73101 4.79343 4.83828 4.86209 4.89265 5.00104 5.02009 5.04864 5.06106 5.14454 5.17691 5.24272 5.28674 5.37647 5.52393 5.54328 5.69697 5.73381 5.81727 6.29525 6.36005 7.01197 7.08761 7.14658 7.84791 8.52064 9.27755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002095 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.730557 B =13364.135283 C =14454.428816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.373 5.373 4 O 0.093 5.907 5 C 0.066 3.934 6 C -0.118 4.118 7 C -0.141 4.141 8 C -0.157 4.157 9 C -0.269 4.269 10 C 0.604 3.396 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.124 3.876 14 C -0.108 4.108 15 C -0.112 4.112 16 C 0.152 3.848 17 H 0.037 0.963 18 C -0.111 4.111 19 C -0.138 4.138 20 C 0.174 3.826 21 N -0.619 5.619 22 C -0.231 4.231 23 H 0.077 0.923 24 C -0.066 4.066 25 N -0.950 5.950 26 Si 0.970 3.030 27 H -0.276 1.276 28 H -0.297 1.297 29 H -0.279 1.279 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.063 0.937 49 H -0.009 1.009 50 H 0.028 0.972 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 26.465 -2.572 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.082 5.082 4 O 0.034 5.966 5 C 0.002 3.998 6 C -0.137 4.137 7 C -0.178 4.178 8 C -0.194 4.194 9 C -0.276 4.276 10 C 0.389 3.611 11 O -0.448 6.448 12 N -0.348 5.348 13 C 0.001 3.999 14 C -0.146 4.146 15 C -0.152 4.152 16 C 0.046 3.954 17 H 0.054 0.946 18 C -0.149 4.149 19 C -0.177 4.177 20 C 0.049 3.951 21 N -0.343 5.343 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.259 4.259 25 N -0.599 5.599 26 Si 0.798 3.202 27 H -0.202 1.202 28 H -0.223 1.223 29 H -0.205 1.205 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.255 0.745 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.009 0.991 50 H 0.047 0.953 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.495 27.126 -3.347 28.341 hybrid contribution 0.047 -2.056 -0.432 2.101 sum 7.542 25.070 -3.779 26.452 Atomic orbital electron populations 1.20379 0.83338 1.04707 1.05290 1.25172 0.99729 0.85943 0.99786 1.73618 0.89337 1.23674 1.21542 1.84487 1.21390 1.22551 1.68202 1.23931 0.96101 0.83198 0.96570 1.20712 0.83762 0.99965 1.09241 1.23240 0.95592 1.00222 0.98730 1.23248 0.99880 1.04401 0.91900 1.21745 0.93383 0.94740 1.17720 1.16965 0.76170 0.84149 0.83838 1.90831 1.52116 1.68896 1.32984 1.45858 1.69257 1.11425 1.08290 1.21387 1.00344 0.79583 0.98623 1.21635 1.03604 0.95124 0.94251 1.21819 1.00201 0.94821 0.98393 1.21228 0.97013 0.83179 0.94021 0.94564 1.22585 0.97217 0.97153 0.97920 1.22883 1.01052 0.95924 0.97792 1.21201 0.87099 0.95178 0.91603 1.44852 1.25218 1.01530 1.62742 1.19259 0.94711 0.90601 1.31441 0.90552 1.25672 0.97711 1.00208 1.02314 1.70147 1.17471 1.18873 1.53404 0.85281 0.77921 0.78211 0.78742 1.20235 1.22303 1.20489 0.87486 0.88839 0.90052 0.83942 0.87324 0.85248 0.85942 0.88472 0.74536 0.92528 0.92264 0.89910 0.89146 0.93923 0.94311 0.88526 0.91028 0.90202 0.91829 0.99116 0.95327 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.49 71.24 0.75 -0.40 16 2 C 0.06 1.13 7.59 45.16 0.34 1.47 16 3 N -0.37 -8.10 12.01 -44.78 -0.54 -8.64 16 4 O 0.09 1.84 10.86 76.93 0.84 2.68 16 5 C 0.07 1.22 7.00 25.48 0.18 1.39 16 6 C -0.12 -1.59 6.14 -11.54 -0.07 -1.66 16 7 C -0.14 -1.18 10.19 30.62 0.31 -0.87 16 8 C -0.16 -1.71 10.24 30.62 0.31 -1.40 16 9 C -0.27 -5.74 6.24 -18.75 -0.12 -5.85 16 10 C 0.60 14.74 7.63 86.65 0.66 15.40 16 11 O -0.57 -19.08 17.11 -4.07 -0.07 -19.15 16 12 N -0.70 -13.28 5.55 -466.41 -2.59 -15.87 16 13 C 0.12 2.85 5.67 86.38 0.49 3.34 16 14 C -0.11 -2.31 5.10 30.59 0.16 -2.15 16 15 C -0.11 -3.69 4.72 30.59 0.14 -3.55 16 16 C 0.15 5.59 3.16 45.34 0.14 5.74 16 17 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 18 C -0.11 -3.27 5.71 31.78 0.18 -3.08 16 19 C -0.14 -4.81 7.08 31.98 0.23 -4.59 16 20 C 0.17 8.53 5.41 86.85 0.47 9.00 16 21 N -0.62 -30.82 3.13 -668.25 -2.09 -32.91 16 22 C -0.23 -12.74 9.71 84.03 0.82 -11.92 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -3.77 5.47 84.86 0.46 -3.30 16 25 N -0.95 -57.67 10.58 21.65 0.23 -57.44 16 26 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 0.89 8.02 -2.39 -0.02 0.87 16 35 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.42 5.44 8.46 -92.71 -0.78 4.66 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.56 7.64 -2.39 -0.02 1.54 16 43 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 44 H 0.04 1.47 7.84 -2.38 -0.02 1.45 16 45 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.07 1.99 7.76 -2.39 -0.02 1.97 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H -0.01 -0.50 8.06 -2.39 -0.02 -0.52 16 50 H 0.03 1.59 6.93 -2.39 -0.02 1.58 16 51 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.35 420.53 3.41 -71.94 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.14 Total: 13.72 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.46 Total: -2.43 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.99 Total: -114.86 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.77 Total: -16.47 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.35 3.41 -71.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267171227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.672 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds