Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41386 * 126.80488 * 2 1 4 4 C 1.35447 * 103.98541 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.77308 * 179.73484 * 4 3 2 6 6 C 1.50707 * 115.55369 * 295.52882 * 5 4 3 7 7 O 1.21280 * 119.99817 * 114.51002 * 6 5 4 8 8 N 1.34768 * 120.00070 * 294.50975 * 6 5 4 9 9 C 1.46492 * 120.00244 * 185.14743 * 8 6 5 10 10 C 1.53002 * 109.47534 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47453 * 179.97438 * 10 9 8 12 12 C 1.53041 * 109.46212 * 295.02979 * 11 10 9 13 13 C 1.53188 * 109.31306 * 178.59927 * 12 11 10 14 14 N 1.46927 * 108.76804 * 54.65656 * 13 12 11 15 15 C 1.36933 * 120.63645 * 126.35852 * 14 13 12 16 16 H 1.08003 * 119.99968 * 329.37684 * 15 14 13 17 17 C 1.38808 * 120.00239 * 149.37487 * 15 14 13 18 18 N 1.31620 * 120.00067 * 345.99150 * 17 15 14 19 19 Si 1.86800 * 120.00174 * 165.99707 * 17 15 14 20 20 H 1.48499 * 109.47131 * 60.00116 * 19 17 15 21 21 H 1.48495 * 109.47246 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47096 * 299.99963 * 19 17 15 23 23 C 1.46933 * 118.73457 * 306.38576 * 14 13 12 24 24 C 1.53035 * 109.46171 * 174.97198 * 11 10 9 25 25 C 1.53007 * 117.50178 * 149.85800 * 5 4 3 26 26 C 1.53000 * 117.49980 * 81.19944 * 5 4 3 27 27 O 1.34037 * 106.45019 * 359.97438 * 4 3 2 28 28 N 1.20919 * 111.56506 * 0.02562 * 27 4 3 29 29 H 1.09000 * 109.46882 * 90.00424 * 1 2 3 30 30 H 1.09005 * 109.46928 * 209.99953 * 1 2 3 31 31 H 1.09000 * 109.46891 * 330.00208 * 1 2 3 32 32 H 1.07998 * 128.00134 * 359.96147 * 3 2 1 33 33 H 0.97010 * 119.99892 * 5.15034 * 8 6 5 34 34 H 1.09001 * 109.47364 * 300.00197 * 9 8 6 35 35 H 1.09000 * 109.47257 * 60.00019 * 9 8 6 36 36 H 1.09001 * 109.46879 * 300.00400 * 10 9 8 37 37 H 1.09007 * 109.46822 * 60.00086 * 10 9 8 38 38 H 1.09000 * 109.46011 * 55.00082 * 11 10 9 39 39 H 1.09002 * 109.49703 * 298.56299 * 12 11 10 40 40 H 1.08996 * 109.49657 * 58.65815 * 12 11 10 41 41 H 1.08998 * 109.59939 * 294.86817 * 13 12 11 42 42 H 1.08996 * 109.70472 * 174.50232 * 13 12 11 43 43 H 0.96996 * 120.00397 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.58298 * 293.81713 * 23 14 13 45 45 H 1.08998 * 109.70136 * 173.46633 * 23 14 13 46 46 H 1.09001 * 109.49832 * 301.33793 * 24 11 10 47 47 H 1.08998 * 109.49849 * 61.40256 * 24 11 10 48 48 H 1.09003 * 117.49008 * 0.02562 * 25 5 4 49 49 H 1.08998 * 117.49954 * 145.01637 * 25 5 4 50 50 H 1.09001 * 117.50194 * 214.97572 * 26 5 4 51 51 H 1.09007 * 117.49636 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 0.0006 5 6 4.9021 1.3695 -0.0047 6 6 5.1644 2.1983 -1.2358 7 8 5.2144 3.4073 -1.1535 8 7 5.3435 1.5961 -2.4280 9 6 5.7098 2.3911 -3.6026 10 6 5.8498 1.4717 -4.8175 11 6 6.2317 2.3021 -6.0444 12 6 5.0876 3.2583 -6.3892 13 6 5.4875 4.1124 -7.5964 14 7 5.8810 3.2213 -8.6963 15 6 5.2996 3.3377 -9.9307 16 1 4.2795 3.6818 -10.0168 17 6 6.0214 3.0135 -11.0712 18 7 7.3271 2.8626 -11.0029 19 14 5.1395 2.7915 -12.7029 20 1 4.4437 4.0524 -13.0651 21 1 6.1281 2.4518 -13.7576 22 1 4.1459 1.6945 -12.5833 23 6 6.9098 2.2025 -8.4465 24 6 6.4941 1.3701 -7.2295 25 6 6.1065 0.7180 0.6780 26 6 5.4082 1.9122 1.3332 27 8 3.4538 -0.7253 0.0015 28 7 2.2868 -1.0423 0.0010 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0709 2.1743 -0.0006 33 1 5.2299 0.6360 -2.5084 34 1 4.9343 3.1323 -3.7959 35 1 6.6576 2.8967 -3.4180 36 1 6.6251 0.7302 -4.6245 37 1 4.9017 0.9665 -5.0020 38 1 7.1324 2.8767 -5.8280 39 1 4.1933 2.6837 -6.6301 40 1 4.8855 3.9062 -5.5363 41 1 6.3266 4.7544 -7.3283 42 1 4.6427 4.7265 -7.9082 43 1 7.8315 2.6364 -11.7999 44 1 7.8648 2.6887 -8.2477 45 1 7.0042 1.5542 -9.3177 46 1 7.2932 0.6739 -6.9748 47 1 5.5866 0.8129 -7.4620 48 1 5.9587 -0.2626 1.1306 49 1 7.0885 0.8890 0.2369 50 1 5.9313 2.8685 1.3231 51 1 4.8013 1.7172 2.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267946099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = 56.872057 kcal Electronic energy + Delta-G solvation = -30248.634038 eV Core-core repulsion = 26152.253415 eV Total energy + Delta-G solvation = -4096.380623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.33183 -40.42321 -38.14514 -37.16533 -35.46492 -35.16445 -33.57210 -31.89261 -31.27253 -29.98792 -29.07997 -28.69878 -25.92155 -24.54131 -23.72756 -23.14061 -22.72300 -22.01017 -21.40713 -20.81890 -19.67053 -19.06467 -18.34437 -17.91797 -16.88886 -16.78802 -16.14022 -15.92660 -15.25848 -14.84991 -14.79276 -14.21866 -14.08986 -13.81512 -13.75442 -13.65016 -13.48365 -13.40904 -13.33809 -12.86323 -12.82208 -12.57277 -12.24692 -12.13736 -11.88029 -11.60200 -11.43520 -11.32903 -11.20982 -11.10898 -10.85203 -10.69965 -10.49405 -10.40291 -10.32841 -10.17055 -10.14509 -9.87009 -9.66641 -9.46131 -9.37237 -9.20366 -8.44813 -6.58946 -5.76052 -3.21553 0.97865 1.81789 1.97191 2.58108 2.92295 3.11538 3.39165 3.44459 3.45740 3.79261 3.88112 4.18680 4.23463 4.37698 4.51234 4.61771 4.81398 4.89002 5.02528 5.04980 5.08438 5.11288 5.12892 5.28352 5.30629 5.35883 5.40023 5.40780 5.46489 5.56171 5.59095 5.71554 5.74620 5.77058 6.00309 6.02440 6.10718 6.21661 6.29230 6.39658 6.57154 6.66179 6.73277 6.85226 6.89016 7.04815 7.20312 7.41117 7.69602 7.81543 7.85917 7.88571 8.50252 9.25390 9.88014 10.46561 11.32320 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.001980 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.163314 B =14140.702137 C =15022.865132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.018 3.982 3 C -0.209 4.209 4 C 0.004 3.996 5 C -0.096 4.096 6 C 0.557 3.443 7 O -0.525 6.525 8 N -0.718 5.718 9 C 0.116 3.884 10 C -0.126 4.126 11 C -0.074 4.074 12 C -0.130 4.130 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.063 0.937 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.121 4.121 27 O 0.105 5.895 28 N -0.361 5.361 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.173 0.827 33 H 0.402 0.598 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.119 0.881 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -6.372 26.995 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C -0.231 4.231 4 C -0.060 4.060 5 C -0.101 4.101 6 C 0.340 3.660 7 O -0.400 6.400 8 N -0.369 5.369 9 C -0.006 4.006 10 C -0.164 4.164 11 C -0.093 4.093 12 C -0.169 4.169 13 C 0.018 3.982 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.046 3.954 24 C -0.174 4.174 25 C -0.182 4.182 26 C -0.159 4.159 27 O 0.038 5.962 28 N -0.065 5.065 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.236 0.764 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.132 0.868 49 H 0.130 0.870 50 H 0.137 0.863 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.188 -6.835 26.866 28.404 hybrid contribution -0.616 0.189 -1.024 1.210 sum -6.803 -6.645 25.842 27.536 Atomic orbital electron populations 1.20199 0.85659 1.03877 1.03720 1.23632 0.99224 0.88574 1.02642 1.22434 0.90845 1.01413 1.08375 1.22839 0.95445 0.83627 1.04096 1.19398 0.91559 1.03119 0.96019 1.18961 0.76746 0.87315 0.82971 1.90746 1.50362 1.13492 1.85438 1.46037 1.70237 1.11949 1.08653 1.21624 1.01199 0.94429 0.83388 1.21920 1.02089 0.98279 0.94070 1.20965 0.98674 0.96484 0.93183 1.22124 0.97780 0.98315 0.98693 1.20899 0.97286 0.91774 0.88206 1.44014 1.45796 1.34404 1.07323 1.19129 0.94548 1.41716 0.82811 0.91978 1.25121 0.95017 1.01688 0.97749 1.69995 1.04693 1.51844 1.28347 0.86366 0.78649 0.78215 0.83490 1.20880 1.21632 1.21051 1.20736 0.89832 0.90374 0.94429 1.22227 1.00309 0.97882 0.96956 1.23229 0.94939 0.98815 1.01171 1.23182 1.01206 0.99483 0.92015 1.84833 1.21746 1.22172 1.67488 1.73879 0.89150 1.23820 1.19652 0.89884 0.90435 0.89847 0.80919 0.76416 0.90720 0.91227 0.91638 0.91588 0.91641 0.92484 0.93123 0.96589 0.93001 0.93615 0.96519 0.89772 0.93452 0.92796 0.86814 0.86952 0.86316 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.47 36.00 0.38 -0.10 16 2 C 0.02 0.17 7.33 -82.10 -0.60 -0.44 16 3 C -0.21 -1.89 11.06 -39.38 -0.44 -2.33 16 4 C 0.00 0.03 6.48 -35.31 -0.23 -0.20 16 5 C -0.10 -0.80 2.38 -156.81 -0.37 -1.17 16 6 C 0.56 6.17 7.07 -10.99 -0.08 6.09 16 7 O -0.52 -7.65 16.71 5.56 0.09 -7.56 16 8 N -0.72 -7.31 5.55 -60.30 -0.33 -7.64 16 9 C 0.12 1.36 5.44 -4.05 -0.02 1.34 16 10 C -0.13 -1.52 4.80 -26.73 -0.13 -1.64 16 11 C -0.07 -1.16 2.15 -90.58 -0.19 -1.36 16 12 C -0.13 -2.22 5.14 -26.61 -0.14 -2.35 16 13 C 0.14 3.07 6.52 -3.71 -0.02 3.04 16 14 N -0.59 -14.95 2.98 -172.32 -0.51 -15.46 16 15 C -0.25 -6.99 9.57 -15.06 -0.14 -7.13 16 16 H 0.06 1.69 7.87 -52.48 -0.41 1.28 16 17 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 18 N -0.90 -26.40 11.20 55.49 0.62 -25.78 16 19 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.17 4.08 5.27 -3.71 -0.02 4.06 16 24 C -0.13 -2.47 5.36 -26.62 -0.14 -2.62 16 25 C -0.14 -0.85 9.94 -26.69 -0.27 -1.11 16 26 C -0.12 -0.79 9.76 -26.69 -0.26 -1.05 16 27 O 0.11 1.06 11.19 17.19 0.19 1.25 16 28 N -0.36 -3.97 12.07 33.42 0.40 -3.57 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.40 3.38 8.48 -40.82 -0.35 3.03 16 34 H 0.07 0.98 6.53 -51.93 -0.34 0.64 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 2.24 6.16 -51.93 -0.32 1.92 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.12 0.82 8.00 -51.93 -0.42 0.40 16 51 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -32.72 414.27 -9.57 -42.29 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.48 Total: 0.40 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.76 Total: -6.97 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.18 Total: -52.45 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: 0.29 Total: -6.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.72 -9.57 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267946099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.159 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds