Wall clock time and date at job start Wed Apr 1 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41386 * 126.80488 * 2 1 4 4 C 1.35447 * 103.98541 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.77308 * 179.73484 * 4 3 2 6 6 C 1.50707 * 115.55369 * 295.52882 * 5 4 3 7 7 O 1.21280 * 119.99817 * 114.51002 * 6 5 4 8 8 N 1.34768 * 120.00070 * 294.50975 * 6 5 4 9 9 C 1.46492 * 120.00244 * 185.14743 * 8 6 5 10 10 C 1.53002 * 109.47534 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47453 * 179.97438 * 10 9 8 12 12 C 1.53041 * 109.46212 * 295.02979 * 11 10 9 13 13 C 1.53188 * 109.31306 * 178.59927 * 12 11 10 14 14 N 1.46927 * 108.76804 * 54.65656 * 13 12 11 15 15 C 1.36933 * 120.63645 * 126.35852 * 14 13 12 16 16 H 1.08003 * 119.99968 * 329.37684 * 15 14 13 17 17 C 1.38808 * 120.00239 * 149.37487 * 15 14 13 18 18 N 1.31620 * 120.00067 * 345.99150 * 17 15 14 19 19 Si 1.86800 * 120.00174 * 165.99707 * 17 15 14 20 20 H 1.48499 * 109.47131 * 60.00116 * 19 17 15 21 21 H 1.48495 * 109.47246 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47096 * 299.99963 * 19 17 15 23 23 C 1.46933 * 118.73457 * 306.38576 * 14 13 12 24 24 C 1.53035 * 109.46171 * 174.97198 * 11 10 9 25 25 C 1.53007 * 117.50178 * 149.85800 * 5 4 3 26 26 C 1.53000 * 117.49980 * 81.19944 * 5 4 3 27 27 O 1.34037 * 106.45019 * 359.97438 * 4 3 2 28 28 N 1.20919 * 111.56506 * 0.02562 * 27 4 3 29 29 H 1.09000 * 109.46882 * 90.00424 * 1 2 3 30 30 H 1.09005 * 109.46928 * 209.99953 * 1 2 3 31 31 H 1.09000 * 109.46891 * 330.00208 * 1 2 3 32 32 H 1.07998 * 128.00134 * 359.96147 * 3 2 1 33 33 H 0.97010 * 119.99892 * 5.15034 * 8 6 5 34 34 H 1.09001 * 109.47364 * 300.00197 * 9 8 6 35 35 H 1.09000 * 109.47257 * 60.00019 * 9 8 6 36 36 H 1.09001 * 109.46879 * 300.00400 * 10 9 8 37 37 H 1.09007 * 109.46822 * 60.00086 * 10 9 8 38 38 H 1.09000 * 109.46011 * 55.00082 * 11 10 9 39 39 H 1.09002 * 109.49703 * 298.56299 * 12 11 10 40 40 H 1.08996 * 109.49657 * 58.65815 * 12 11 10 41 41 H 1.08998 * 109.59939 * 294.86817 * 13 12 11 42 42 H 1.08996 * 109.70472 * 174.50232 * 13 12 11 43 43 H 0.96996 * 120.00397 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.58298 * 293.81713 * 23 14 13 45 45 H 1.08998 * 109.70136 * 173.46633 * 23 14 13 46 46 H 1.09001 * 109.49832 * 301.33793 * 24 11 10 47 47 H 1.08998 * 109.49849 * 61.40256 * 24 11 10 48 48 H 1.09003 * 117.49008 * 0.02562 * 25 5 4 49 49 H 1.08998 * 117.49954 * 145.01637 * 25 5 4 50 50 H 1.09001 * 117.50194 * 214.97572 * 26 5 4 51 51 H 1.09007 * 117.49636 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 0.0006 5 6 4.9021 1.3695 -0.0047 6 6 5.1644 2.1983 -1.2358 7 8 5.2144 3.4073 -1.1535 8 7 5.3435 1.5961 -2.4280 9 6 5.7098 2.3911 -3.6026 10 6 5.8498 1.4717 -4.8175 11 6 6.2317 2.3021 -6.0444 12 6 5.0876 3.2583 -6.3892 13 6 5.4875 4.1124 -7.5964 14 7 5.8810 3.2213 -8.6963 15 6 5.2996 3.3377 -9.9307 16 1 4.2795 3.6818 -10.0168 17 6 6.0214 3.0135 -11.0712 18 7 7.3271 2.8626 -11.0029 19 14 5.1395 2.7915 -12.7029 20 1 4.4437 4.0524 -13.0651 21 1 6.1281 2.4518 -13.7576 22 1 4.1459 1.6945 -12.5833 23 6 6.9098 2.2025 -8.4465 24 6 6.4941 1.3701 -7.2295 25 6 6.1065 0.7180 0.6780 26 6 5.4082 1.9122 1.3332 27 8 3.4538 -0.7253 0.0015 28 7 2.2868 -1.0423 0.0010 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0709 2.1743 -0.0006 33 1 5.2299 0.6360 -2.5084 34 1 4.9343 3.1323 -3.7959 35 1 6.6576 2.8967 -3.4180 36 1 6.6251 0.7302 -4.6245 37 1 4.9017 0.9665 -5.0020 38 1 7.1324 2.8767 -5.8280 39 1 4.1933 2.6837 -6.6301 40 1 4.8855 3.9062 -5.5363 41 1 6.3266 4.7544 -7.3283 42 1 4.6427 4.7265 -7.9082 43 1 7.8315 2.6364 -11.7999 44 1 7.8648 2.6887 -8.2477 45 1 7.0042 1.5542 -9.3177 46 1 7.2932 0.6739 -6.9748 47 1 5.5866 0.8129 -7.4620 48 1 5.9587 -0.2626 1.1306 49 1 7.0885 0.8890 0.2369 50 1 5.9313 2.8685 1.3231 51 1 4.8013 1.7172 2.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267946099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:02 Heat of formation + Delta-G solvation = 37.913846 kcal Electronic energy + Delta-G solvation = -30249.456127 eV Core-core repulsion = 26152.253415 eV Total energy + Delta-G solvation = -4097.202712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.02919 -41.24000 -39.58463 -37.92824 -36.69411 -35.80724 -35.09932 -33.05754 -32.53494 -31.60938 -30.15243 -29.62900 -27.27253 -25.79294 -24.50759 -24.31760 -23.62657 -23.23046 -22.24689 -22.17699 -20.74873 -20.34250 -19.07370 -18.70240 -18.63072 -17.58397 -17.11588 -16.84400 -16.70564 -16.10502 -15.75433 -15.45454 -15.29554 -15.12135 -14.89047 -14.78268 -14.39967 -14.28334 -14.22782 -13.98828 -13.96284 -13.84983 -13.42700 -13.04274 -12.91757 -12.85318 -12.61622 -12.55195 -12.45568 -12.31311 -12.18583 -11.98550 -11.95214 -11.82426 -11.76984 -11.50239 -11.18122 -11.04022 -10.99531 -10.98658 -10.54101 -10.36559 -10.14397 -8.62815 -7.87082 -5.36168 0.29296 1.14186 1.22073 1.45504 1.47493 1.54526 1.82640 2.20032 2.50405 2.52495 3.19660 3.27328 3.30238 3.52821 3.65846 3.73076 3.79765 3.82398 3.91666 4.00487 4.12600 4.20811 4.29264 4.41332 4.47451 4.58097 4.60574 4.65121 4.65425 4.67217 4.74831 4.76742 4.81135 4.84212 4.89162 4.91097 5.02119 5.03766 5.09978 5.11364 5.18878 5.26220 5.33814 5.37415 5.40384 5.46465 5.56097 5.66670 5.81171 6.39791 6.40980 7.06310 7.16270 7.18606 7.87413 8.39961 9.18552 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.001980 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.163314 B =14140.702137 C =15022.865132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.219 4.219 4 C 0.008 3.992 5 C -0.109 4.109 6 C 0.557 3.443 7 O -0.564 6.564 8 N -0.710 5.710 9 C 0.123 3.877 10 C -0.109 4.109 11 C -0.069 4.069 12 C -0.117 4.117 13 C 0.138 3.862 14 N -0.612 5.612 15 C -0.265 4.265 16 H 0.062 0.938 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.176 3.824 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.117 4.117 27 O 0.099 5.901 28 N -0.388 5.388 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.010 0.990 42 H 0.047 0.953 43 H 0.250 0.750 44 H -0.006 1.006 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.128 0.872 49 H 0.120 0.880 50 H 0.113 0.887 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -7.339 28.844 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C -0.240 4.240 4 C -0.056 4.056 5 C -0.114 4.114 6 C 0.343 3.657 7 O -0.442 6.442 8 N -0.361 5.361 9 C -0.001 4.001 10 C -0.147 4.147 11 C -0.088 4.088 12 C -0.156 4.156 13 C 0.013 3.987 14 N -0.336 5.336 15 C -0.396 4.396 16 H 0.080 0.920 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.796 3.204 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.203 1.203 23 C 0.050 3.950 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.155 4.155 27 O 0.034 5.966 28 N -0.094 5.094 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.199 0.801 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.012 0.988 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.138 0.862 50 H 0.132 0.868 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.102 -7.824 28.741 30.622 hybrid contribution -0.323 0.561 -1.584 1.711 sum -7.424 -7.263 27.157 29.076 Atomic orbital electron populations 1.20340 0.83823 1.05006 1.04381 1.24125 1.00525 0.88257 1.01539 1.22654 0.90997 1.01849 1.08541 1.22947 0.95737 0.83369 1.03533 1.19261 0.92476 1.04065 0.95567 1.19335 0.75735 0.87009 0.83669 1.90728 1.52171 1.15273 1.86069 1.45934 1.69636 1.12389 1.08096 1.21424 1.00637 0.94191 0.83807 1.21707 1.02993 0.97885 0.92135 1.20870 0.98120 0.96099 0.93703 1.21975 0.97982 0.98266 0.97405 1.21069 0.96818 0.92040 0.88769 1.44302 1.45906 1.35713 1.07656 1.19455 0.94738 1.41188 0.84186 0.92039 1.25890 0.95683 1.01978 1.01047 1.70159 1.06038 1.53071 1.28879 0.85335 0.77466 0.78330 0.79268 1.20155 1.21869 1.20330 1.20585 0.88914 0.90032 0.95447 1.22024 1.00723 0.97746 0.95531 1.23373 0.94155 0.99204 0.99576 1.23280 1.01054 0.99672 0.91443 1.84801 1.21537 1.22557 1.67731 1.73870 0.89652 1.24766 1.21144 0.89344 0.90072 0.87994 0.80068 0.75160 0.92022 0.91536 0.89608 0.91024 0.91848 0.92837 0.90643 0.97188 0.93409 0.94083 0.98827 0.93321 0.91108 0.93194 0.85369 0.86162 0.86823 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.47 71.23 0.75 -0.10 16 2 C 0.01 0.24 7.33 43.58 0.32 0.56 16 3 C -0.22 -3.63 11.06 22.40 0.25 -3.39 16 4 C 0.01 0.13 6.48 25.04 0.16 0.29 16 5 C -0.11 -1.60 2.38 -53.67 -0.13 -1.73 16 6 C 0.56 11.45 7.07 87.66 0.62 12.07 16 7 O -0.56 -15.91 16.71 -3.03 -0.05 -15.97 16 8 N -0.71 -12.86 5.55 -463.08 -2.57 -15.43 16 9 C 0.12 2.59 5.44 86.38 0.47 3.06 16 10 C -0.11 -2.31 4.80 30.59 0.15 -2.17 16 11 C -0.07 -2.04 2.15 -10.77 -0.02 -2.06 16 12 C -0.12 -3.84 5.14 30.67 0.16 -3.68 16 13 C 0.14 5.88 6.52 86.36 0.56 6.44 16 14 N -0.61 -31.44 2.98 -699.11 -2.09 -33.52 16 15 C -0.27 -14.95 9.57 84.03 0.80 -14.15 16 16 H 0.06 3.39 7.87 -2.91 -0.02 3.37 16 17 C -0.05 -2.88 4.97 84.86 0.42 -2.45 16 18 N -0.94 -56.21 11.20 21.65 0.24 -55.97 16 19 Si 0.97 45.47 29.58 68.60 2.03 47.50 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 C 0.18 8.53 5.27 86.36 0.45 8.99 16 24 C -0.12 -4.33 5.36 30.67 0.16 -4.17 16 25 C -0.13 -1.15 9.94 30.62 0.30 -0.84 16 26 C -0.12 -1.28 9.76 30.62 0.30 -0.98 16 27 O 0.10 1.86 11.19 71.67 0.80 2.66 16 28 N -0.39 -8.08 12.07 -49.55 -0.60 -8.68 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.41 5.81 8.48 -92.70 -0.79 5.03 16 34 H 0.06 1.49 6.53 -2.39 -0.02 1.47 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.12 6.50 -2.39 -0.02 2.10 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.05 2.68 6.16 -2.39 -0.01 2.67 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.11 1.40 8.00 -2.39 -0.02 1.38 16 51 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -72.57 414.27 3.64 -68.93 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.14 Total: 14.80 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.73 Total: -4.31 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -5.01 Total: -113.61 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.75 Total: -13.31 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.57 3.64 -68.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267946099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.844 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds