Wall clock time and date at job start Wed Apr 1 2020 04:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.80104 * 2 1 4 4 C 1.35446 * 103.98509 * 180.08633 * 3 2 1 5 5 C 1.50698 * 126.77762 * 179.90427 * 4 3 2 6 6 C 1.50701 * 115.54804 * 329.19632 * 5 4 3 7 7 O 1.21287 * 119.99622 * 98.95428 * 6 5 4 8 8 N 1.34777 * 120.00474 * 278.95409 * 6 5 4 9 9 C 1.46498 * 120.00300 * 174.79856 * 8 6 5 10 10 H 1.09001 * 109.46890 * 324.99468 * 9 8 6 11 11 C 1.53000 * 109.47157 * 84.99755 * 9 8 6 12 12 C 1.52998 * 109.47129 * 60.00094 * 11 9 8 13 13 C 1.53002 * 109.47074 * 60.00156 * 12 11 9 14 14 C 1.53005 * 109.46785 * 299.99661 * 13 12 11 15 15 C 1.52998 * 109.47038 * 60.00317 * 14 13 12 16 16 H 1.09003 * 109.47125 * 59.99949 * 15 14 13 17 17 C 1.53005 * 109.47038 * 180.02562 * 15 14 13 18 18 N 1.46506 * 109.47047 * 294.99546 * 17 15 14 19 19 C 1.36936 * 120.00026 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99533 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99881 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99839 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47017 * 90.00019 * 23 21 19 25 25 H 1.48505 * 109.47048 * 209.99588 * 23 21 19 26 26 H 1.48499 * 109.47244 * 329.99766 * 23 21 19 27 27 C 1.52998 * 117.52132 * 114.89738 * 5 4 3 28 28 C 1.53001 * 117.50193 * 183.53009 * 5 4 3 29 29 O 1.34042 * 106.44669 * 359.64498 * 4 3 2 30 30 N 1.20914 * 111.56625 * 0.24200 * 29 4 3 31 31 H 1.09000 * 109.47165 * 270.29366 * 1 2 3 32 32 H 1.08992 * 109.46880 * 30.29940 * 1 2 3 33 33 H 1.09006 * 109.46461 * 150.29632 * 1 2 3 34 34 H 1.08003 * 128.00494 * 359.97438 * 3 2 1 35 35 H 0.97004 * 119.99388 * 354.79141 * 8 6 5 36 36 H 1.09003 * 109.46883 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47304 * 299.99639 * 11 9 8 38 38 H 1.09001 * 109.46925 * 179.97438 * 12 11 9 39 39 H 1.08993 * 109.47265 * 299.99698 * 12 11 9 40 40 H 1.08993 * 109.47449 * 59.99655 * 13 12 11 41 41 H 1.09001 * 109.47092 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47204 * 300.00314 * 14 13 12 43 43 H 1.09002 * 109.46734 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47028 * 175.00226 * 17 15 14 45 45 H 1.08993 * 109.47095 * 54.99813 * 17 15 14 46 46 H 0.97003 * 119.99468 * 0.02562 * 18 17 15 47 47 H 0.97004 * 120.00007 * 179.97438 * 22 21 19 48 48 H 1.09000 * 117.50358 * 214.97464 * 27 5 4 49 49 H 1.09002 * 117.49429 * 359.97438 * 27 5 4 50 50 H 1.08998 * 117.49651 * 359.97182 * 28 5 4 51 51 H 1.08991 * 117.50208 * 144.97712 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6069 -0.0020 5 6 4.9021 1.3696 -0.0049 6 6 4.8703 2.7053 -0.7019 7 8 4.7481 3.7240 -0.0552 8 7 4.9776 2.7679 -2.0440 9 6 4.8326 4.0535 -2.7313 10 1 4.0912 4.6612 -2.2125 11 6 6.1772 4.7835 -2.7365 12 6 7.2178 3.9304 -3.4646 13 6 6.7625 3.6901 -4.9054 14 6 5.4179 2.9600 -4.9001 15 6 4.3772 3.8131 -4.1720 16 1 4.2693 4.7696 -4.6834 17 6 3.0328 3.0827 -4.1662 18 7 2.5389 2.9578 -5.5398 19 6 1.3444 2.3343 -5.7839 20 1 0.7663 1.9350 -4.9638 21 6 0.8768 2.2154 -7.0855 22 7 -0.2715 1.6166 -7.3200 23 14 1.8773 2.9055 -8.5040 24 1 2.8075 1.8628 -9.0070 25 1 0.9633 3.3226 -9.5977 26 1 2.6565 4.0795 -8.0353 27 6 5.8033 1.2355 1.2243 28 6 6.1969 0.5589 -0.0903 29 8 3.4538 -0.7253 0.0050 30 7 2.2869 -1.0423 0.0059 31 1 -0.3633 0.0053 1.0276 32 1 -0.3633 0.8872 -0.5184 33 1 -0.3632 -0.8927 -0.5093 34 1 2.0709 2.1744 -0.0004 35 1 5.1509 1.9616 -2.5547 36 1 6.0694 5.7399 -3.2483 37 1 6.5016 4.9549 -1.7101 38 1 8.1756 4.4507 -3.4687 39 1 7.3258 2.9740 -2.9533 40 1 6.6546 4.6465 -5.4168 41 1 7.5036 3.0819 -5.4240 42 1 5.5258 2.0034 -4.3887 43 1 5.0937 2.7883 -5.9266 44 1 2.3148 3.6480 -3.5720 45 1 3.1604 2.0902 -3.7343 46 1 3.0585 3.3161 -6.2764 47 1 -0.5985 1.5339 -8.2296 48 1 6.3731 2.1134 1.5289 49 1 5.4559 0.5958 2.0356 50 1 6.1086 -0.5262 -0.1440 51 1 7.0255 0.9915 -0.6509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268774366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:56 Heat of formation + Delta-G solvation = 50.305947 kcal Electronic energy + Delta-G solvation = -32185.189479 eV Core-core repulsion = 28088.524129 eV Total energy + Delta-G solvation = -4096.665350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.98195 -40.69695 -38.85962 -36.83499 -34.88749 -34.79759 -33.75454 -32.00622 -31.59874 -30.17989 -29.88628 -28.68930 -25.76874 -24.95317 -23.37360 -22.99853 -22.72778 -22.21079 -21.49273 -20.73465 -19.64913 -19.09474 -18.20355 -17.62920 -17.59149 -16.81987 -15.94879 -15.64204 -15.34043 -14.90171 -14.74557 -14.42858 -14.10515 -13.86952 -13.82124 -13.50319 -13.42055 -13.36469 -13.06777 -12.92732 -12.82507 -12.53937 -12.37215 -12.20202 -11.98398 -11.87266 -11.67284 -11.54913 -11.25536 -11.13582 -11.11224 -11.02899 -10.85120 -10.53550 -10.30932 -10.11489 -10.00095 -9.98471 -9.95090 -9.60211 -9.27349 -9.07509 -8.90681 -7.25611 -5.78887 -3.14479 1.31019 2.14730 2.19313 2.79892 3.20330 3.33920 3.35932 3.36212 3.42428 4.01449 4.17504 4.31475 4.44596 4.56222 4.59966 4.68580 4.72919 4.76913 4.94291 5.05111 5.16134 5.17206 5.23735 5.32050 5.42903 5.43389 5.44501 5.47323 5.48886 5.52199 5.53527 5.58900 5.66544 5.68575 5.74542 5.75117 5.78863 5.91269 6.00089 6.04554 6.10399 6.11652 6.19374 6.31934 6.40551 6.44480 6.63759 6.70922 7.38957 7.97003 8.04983 8.21716 8.39858 9.18884 9.91062 10.10783 11.39631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004346 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.439939 B = 6440.656648 C = 9008.971749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 C -0.208 4.208 4 C 0.005 3.995 5 C -0.088 4.088 6 C 0.562 3.438 7 O -0.527 6.527 8 N -0.704 5.704 9 C 0.156 3.844 10 H 0.090 0.910 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.086 0.914 17 C 0.165 3.835 18 N -0.754 5.754 19 C -0.243 4.243 20 H 0.088 0.912 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.126 4.126 28 C -0.152 4.152 29 O 0.102 5.898 30 N -0.363 5.363 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.115 0.885 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.791 1.152 15.674 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C -0.229 4.229 4 C -0.059 4.059 5 C -0.093 4.093 6 C 0.346 3.654 7 O -0.403 6.403 8 N -0.356 5.356 9 C 0.052 3.948 10 H 0.108 0.892 11 C -0.167 4.167 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.126 4.126 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.400 5.400 19 C -0.373 4.373 20 H 0.106 0.894 21 C -0.190 4.190 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.164 4.164 28 C -0.189 4.189 29 O 0.035 5.965 30 N -0.067 5.067 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.188 0.812 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.132 0.868 49 H 0.127 0.873 50 H 0.133 0.867 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.216 0.452 16.158 22.199 hybrid contribution 0.400 0.875 -1.513 1.793 sum 15.616 1.327 14.645 21.449 Atomic orbital electron populations 1.20214 0.85641 1.04556 1.03161 1.23590 0.99235 0.88432 1.01999 1.22380 0.90847 1.01387 1.08270 1.22622 0.95149 0.83823 1.04315 1.19314 0.87911 0.95075 1.06952 1.18846 0.76295 0.87956 0.82346 1.90718 1.48935 1.35228 1.65436 1.46063 1.71719 1.11741 1.06081 1.20993 0.97293 0.84031 0.92499 0.89237 1.21911 0.94967 0.98850 1.00999 1.21488 0.97987 0.99984 0.95847 1.21594 0.97117 1.00763 0.96432 1.21560 0.93852 0.98076 1.01582 1.21698 0.96268 1.00842 0.93780 0.89526 1.20608 0.91047 0.96847 0.87726 1.42703 1.24110 1.70929 1.02214 1.19030 0.95450 1.28873 0.93939 0.89394 1.24659 0.96910 1.00584 0.96895 1.69699 1.20361 1.48201 1.19902 0.86574 0.79793 0.78956 0.83358 1.21081 1.21712 1.20344 1.23144 0.98952 1.03270 0.91024 1.23252 0.94620 1.00397 1.00626 1.84779 1.21935 1.21829 1.67925 1.73836 0.89024 1.23750 1.20131 0.90253 0.89498 0.90256 0.81159 0.75989 0.90940 0.91420 0.92301 0.92201 0.91914 0.92113 0.92247 0.90925 0.95681 0.95663 0.80637 0.93066 0.86836 0.87281 0.86700 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.47 36.01 0.38 -0.51 16 2 C 0.03 0.36 7.33 -82.10 -0.60 -0.24 16 3 C -0.21 -2.81 10.61 -39.38 -0.42 -3.23 16 4 C 0.00 0.06 6.76 -35.31 -0.24 -0.18 16 5 C -0.09 -0.92 2.39 -156.81 -0.38 -1.30 16 6 C 0.56 6.86 6.56 -10.98 -0.07 6.79 16 7 O -0.53 -7.93 16.68 5.55 0.09 -7.84 16 8 N -0.70 -8.03 3.61 -53.81 -0.19 -8.22 16 9 C 0.16 1.88 2.19 -67.93 -0.15 1.74 16 10 H 0.09 1.22 7.66 -51.93 -0.40 0.82 16 11 C -0.13 -1.32 5.60 -26.73 -0.15 -1.47 16 12 C -0.12 -1.06 5.77 -26.73 -0.15 -1.21 16 13 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 14 C -0.11 -1.43 4.90 -26.73 -0.13 -1.56 16 15 C -0.11 -1.47 2.02 -90.62 -0.18 -1.65 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.17 3.04 5.42 -4.04 -0.02 3.02 16 18 N -0.75 -17.33 5.13 -59.91 -0.31 -17.64 16 19 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 20 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 23 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 27 C -0.13 -1.03 9.87 -26.73 -0.26 -1.29 16 28 C -0.15 -1.14 9.89 -26.73 -0.26 -1.40 16 29 O 0.10 1.39 10.96 17.17 0.19 1.58 16 30 N -0.36 -5.46 12.07 33.42 0.40 -5.06 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.17 2.22 8.06 -52.48 -0.42 1.79 16 35 H 0.40 4.35 6.67 -40.82 -0.27 4.08 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.53 7.60 -51.93 -0.39 0.14 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.71 6.51 -51.93 -0.34 0.38 16 43 H 0.07 1.07 7.18 -51.93 -0.37 0.70 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.48 7.61 -51.93 -0.39 0.09 16 46 H 0.36 8.04 4.71 -40.82 -0.19 7.85 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.11 0.79 8.00 -51.93 -0.42 0.38 16 51 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -33.58 408.72 -8.94 -42.52 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.29 Total: 10.69 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.06 Total: -10.82 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.68 Total: -59.41 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.28 Total: -6.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.58 -8.94 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.831 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds