Wall clock time and date at job start Wed Apr 1 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.80104 * 2 1 4 4 C 1.35446 * 103.98509 * 180.08633 * 3 2 1 5 5 C 1.50698 * 126.77762 * 179.90427 * 4 3 2 6 6 C 1.50701 * 115.54804 * 329.19632 * 5 4 3 7 7 O 1.21287 * 119.99622 * 98.95428 * 6 5 4 8 8 N 1.34777 * 120.00474 * 278.95409 * 6 5 4 9 9 C 1.46498 * 120.00300 * 174.79856 * 8 6 5 10 10 H 1.09001 * 109.46890 * 324.99468 * 9 8 6 11 11 C 1.53000 * 109.47157 * 84.99755 * 9 8 6 12 12 C 1.52998 * 109.47129 * 60.00094 * 11 9 8 13 13 C 1.53002 * 109.47074 * 60.00156 * 12 11 9 14 14 C 1.53005 * 109.46785 * 299.99661 * 13 12 11 15 15 C 1.52998 * 109.47038 * 60.00317 * 14 13 12 16 16 H 1.09003 * 109.47125 * 59.99949 * 15 14 13 17 17 C 1.53005 * 109.47038 * 180.02562 * 15 14 13 18 18 N 1.46506 * 109.47047 * 294.99546 * 17 15 14 19 19 C 1.36936 * 120.00026 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99533 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99881 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99839 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47017 * 90.00019 * 23 21 19 25 25 H 1.48505 * 109.47048 * 209.99588 * 23 21 19 26 26 H 1.48499 * 109.47244 * 329.99766 * 23 21 19 27 27 C 1.52998 * 117.52132 * 114.89738 * 5 4 3 28 28 C 1.53001 * 117.50193 * 183.53009 * 5 4 3 29 29 O 1.34042 * 106.44669 * 359.64498 * 4 3 2 30 30 N 1.20914 * 111.56625 * 0.24200 * 29 4 3 31 31 H 1.09000 * 109.47165 * 270.29366 * 1 2 3 32 32 H 1.08992 * 109.46880 * 30.29940 * 1 2 3 33 33 H 1.09006 * 109.46461 * 150.29632 * 1 2 3 34 34 H 1.08003 * 128.00494 * 359.97438 * 3 2 1 35 35 H 0.97004 * 119.99388 * 354.79141 * 8 6 5 36 36 H 1.09003 * 109.46883 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47304 * 299.99639 * 11 9 8 38 38 H 1.09001 * 109.46925 * 179.97438 * 12 11 9 39 39 H 1.08993 * 109.47265 * 299.99698 * 12 11 9 40 40 H 1.08993 * 109.47449 * 59.99655 * 13 12 11 41 41 H 1.09001 * 109.47092 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47204 * 300.00314 * 14 13 12 43 43 H 1.09002 * 109.46734 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47028 * 175.00226 * 17 15 14 45 45 H 1.08993 * 109.47095 * 54.99813 * 17 15 14 46 46 H 0.97003 * 119.99468 * 0.02562 * 18 17 15 47 47 H 0.97004 * 120.00007 * 179.97438 * 22 21 19 48 48 H 1.09000 * 117.50358 * 214.97464 * 27 5 4 49 49 H 1.09002 * 117.49429 * 359.97438 * 27 5 4 50 50 H 1.08998 * 117.49651 * 359.97182 * 28 5 4 51 51 H 1.08991 * 117.50208 * 144.97712 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6069 -0.0020 5 6 4.9021 1.3696 -0.0049 6 6 4.8703 2.7053 -0.7019 7 8 4.7481 3.7240 -0.0552 8 7 4.9776 2.7679 -2.0440 9 6 4.8326 4.0535 -2.7313 10 1 4.0912 4.6612 -2.2125 11 6 6.1772 4.7835 -2.7365 12 6 7.2178 3.9304 -3.4646 13 6 6.7625 3.6901 -4.9054 14 6 5.4179 2.9600 -4.9001 15 6 4.3772 3.8131 -4.1720 16 1 4.2693 4.7696 -4.6834 17 6 3.0328 3.0827 -4.1662 18 7 2.5389 2.9578 -5.5398 19 6 1.3444 2.3343 -5.7839 20 1 0.7663 1.9350 -4.9638 21 6 0.8768 2.2154 -7.0855 22 7 -0.2715 1.6166 -7.3200 23 14 1.8773 2.9055 -8.5040 24 1 2.8075 1.8628 -9.0070 25 1 0.9633 3.3226 -9.5977 26 1 2.6565 4.0795 -8.0353 27 6 5.8033 1.2355 1.2243 28 6 6.1969 0.5589 -0.0903 29 8 3.4538 -0.7253 0.0050 30 7 2.2869 -1.0423 0.0059 31 1 -0.3633 0.0053 1.0276 32 1 -0.3633 0.8872 -0.5184 33 1 -0.3632 -0.8927 -0.5093 34 1 2.0709 2.1744 -0.0004 35 1 5.1509 1.9616 -2.5547 36 1 6.0694 5.7399 -3.2483 37 1 6.5016 4.9549 -1.7101 38 1 8.1756 4.4507 -3.4687 39 1 7.3258 2.9740 -2.9533 40 1 6.6546 4.6465 -5.4168 41 1 7.5036 3.0819 -5.4240 42 1 5.5258 2.0034 -4.3887 43 1 5.0937 2.7883 -5.9266 44 1 2.3148 3.6480 -3.5720 45 1 3.1604 2.0902 -3.7343 46 1 3.0585 3.3161 -6.2764 47 1 -0.5985 1.5339 -8.2296 48 1 6.3731 2.1134 1.5289 49 1 5.4559 0.5958 2.0356 50 1 6.1086 -0.5262 -0.1440 51 1 7.0255 0.9915 -0.6509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268774366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:55 Heat of formation + Delta-G solvation = 30.068235 kcal Electronic energy + Delta-G solvation = -32186.067052 eV Core-core repulsion = 28088.524129 eV Total energy + Delta-G solvation = -4097.542923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.06043 -41.67007 -39.83450 -37.72442 -36.62119 -35.84704 -34.69460 -33.87629 -32.60655 -31.63665 -30.94013 -29.68925 -27.23623 -25.94855 -24.42421 -24.40536 -23.61950 -23.21568 -22.48711 -22.05930 -20.67575 -20.05492 -19.72128 -19.05980 -18.71008 -17.77855 -16.96686 -16.72825 -16.45310 -16.39191 -15.73710 -15.70150 -15.50807 -15.04369 -14.87646 -14.71056 -14.57645 -14.37491 -14.28053 -14.14255 -13.99618 -13.82934 -13.48087 -13.16182 -13.06460 -12.98674 -12.75405 -12.60631 -12.58371 -12.42908 -12.16803 -12.13932 -11.93907 -11.91606 -11.86585 -11.41392 -11.22351 -11.07218 -11.04170 -10.92508 -10.89460 -10.26509 -10.05544 -9.31888 -8.04575 -5.38541 0.29007 1.11265 1.17790 1.35537 1.39967 1.47356 1.88718 2.25713 2.46601 2.60704 3.14992 3.17016 3.26818 3.39811 3.53378 3.69182 3.75329 3.80518 3.82311 3.94118 4.02038 4.17963 4.22457 4.30745 4.41914 4.45442 4.46264 4.56915 4.58345 4.59823 4.64855 4.67569 4.71891 4.77484 4.78025 4.89619 4.91917 4.98913 5.08146 5.11405 5.13116 5.16914 5.26708 5.28586 5.34435 5.42417 5.49274 5.59300 5.72348 6.18748 6.43915 7.05987 7.09589 7.16216 7.80839 8.01848 9.17180 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004346 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.439939 B = 6440.656648 C = 9008.971749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.015 3.985 3 C -0.232 4.232 4 C 0.018 3.982 5 C -0.114 4.114 6 C 0.566 3.434 7 O -0.558 6.558 8 N -0.699 5.699 9 C 0.161 3.839 10 H 0.070 0.930 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.114 4.114 14 C -0.112 4.112 15 C -0.093 4.093 16 H 0.089 0.911 17 C 0.166 3.834 18 N -0.752 5.752 19 C -0.236 4.236 20 H 0.048 0.952 21 C -0.062 4.062 22 N -0.984 5.984 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.248 1.248 27 C -0.116 4.116 28 C -0.129 4.129 29 O 0.102 5.898 30 N -0.388 5.388 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.169 0.831 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.009 0.991 45 H 0.020 0.980 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.124 0.876 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.452 1.934 15.499 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C -0.254 4.254 4 C -0.046 4.046 5 C -0.118 4.118 6 C 0.351 3.649 7 O -0.436 6.436 8 N -0.350 5.350 9 C 0.057 3.943 10 H 0.088 0.912 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.113 4.113 16 H 0.107 0.893 17 C 0.039 3.961 18 N -0.398 5.398 19 C -0.367 4.367 20 H 0.066 0.934 21 C -0.254 4.254 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.173 1.173 27 C -0.154 4.154 28 C -0.165 4.165 29 O 0.037 5.963 30 N -0.095 5.095 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.038 0.962 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.142 0.858 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.927 1.241 16.008 24.820 hybrid contribution -0.807 0.610 -1.352 1.689 sum 18.120 1.851 14.656 23.378 Atomic orbital electron populations 1.20311 0.84341 1.04362 1.04612 1.24014 1.00364 0.88432 1.01470 1.22481 0.91603 1.01325 1.09943 1.22957 0.95846 0.83453 1.02342 1.19323 0.88208 0.94724 1.09592 1.19045 0.75426 0.88213 0.82260 1.90701 1.50347 1.36521 1.66041 1.46032 1.71281 1.11716 1.06021 1.20880 0.98240 0.84312 0.90915 0.91188 1.21847 0.93760 0.99153 1.01195 1.21466 0.98143 1.00242 0.94874 1.21546 0.95556 1.00740 0.97339 1.21552 0.94883 0.98491 1.00077 1.21555 0.93863 1.00457 0.95386 0.89256 1.20705 0.93317 0.96944 0.85105 1.42646 1.22607 1.70293 1.04294 1.18967 0.96617 1.28156 0.92938 0.93365 1.25525 0.98264 1.01552 1.00029 1.69896 1.22733 1.50370 1.20468 0.85404 0.78218 0.79243 0.78904 1.20088 1.22328 1.17281 1.23279 0.97405 1.03667 0.91006 1.23444 0.92681 1.00656 0.99767 1.84738 1.21452 1.22206 1.67878 1.73810 0.89608 1.24405 1.21635 0.87965 0.89497 0.90546 0.81377 0.75447 0.90172 0.91764 0.90494 0.91568 0.91593 0.90716 0.91719 0.92843 0.97320 0.96208 0.79804 0.93326 0.86170 0.86470 0.85812 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 10.47 71.24 0.75 -1.11 16 2 C 0.02 0.44 7.33 43.58 0.32 0.76 16 3 C -0.23 -6.51 10.61 22.40 0.24 -6.27 16 4 C 0.02 0.45 6.76 25.04 0.17 0.62 16 5 C -0.11 -2.24 2.39 -53.67 -0.13 -2.36 16 6 C 0.57 13.29 6.56 87.66 0.58 13.87 16 7 O -0.56 -16.52 16.68 -3.05 -0.05 -16.57 16 8 N -0.70 -15.09 3.61 -442.53 -1.60 -16.69 16 9 C 0.16 3.69 2.19 44.99 0.10 3.79 16 10 H 0.07 1.90 7.66 -2.39 -0.02 1.88 16 11 C -0.12 -2.17 5.60 30.59 0.17 -2.00 16 12 C -0.11 -1.58 5.77 30.59 0.18 -1.41 16 13 C -0.11 -1.90 5.92 30.60 0.18 -1.71 16 14 C -0.11 -2.57 4.90 30.59 0.15 -2.42 16 15 C -0.09 -2.45 2.02 -10.79 -0.02 -2.47 16 16 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.17 6.15 5.42 86.38 0.47 6.62 16 18 N -0.75 -34.51 5.13 -343.44 -1.76 -36.27 16 19 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 20 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 21 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 22 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 23 Si 0.96 44.85 27.74 68.60 1.90 46.75 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 27 C -0.12 -1.62 9.87 30.59 0.30 -1.32 16 28 C -0.13 -1.55 9.89 30.60 0.30 -1.25 16 29 O 0.10 2.78 10.96 71.62 0.79 3.56 16 30 N -0.39 -11.91 12.07 -49.56 -0.60 -12.51 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.41 8.12 6.67 -92.71 -0.62 7.50 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.90 7.60 -2.39 -0.02 0.88 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.40 6.51 -2.39 -0.02 1.39 16 43 H 0.05 1.45 7.18 -2.39 -0.02 1.43 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.02 0.77 7.61 -2.39 -0.02 0.75 16 46 H 0.37 15.81 4.71 -92.71 -0.44 15.38 16 47 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 48 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.12 1.33 8.00 -2.39 -0.02 1.31 16 51 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -75.12 408.72 3.90 -71.22 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.17 Total: 36.29 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.09 Total: -12.57 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -3.66 Total: -128.68 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.73 Total: -13.01 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -75.12 3.90 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.288 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds