Wall clock time and date at job start Wed Apr 1 2020 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41379 * 126.80663 * 2 1 4 4 C 1.35444 * 103.98529 * 180.09586 * 3 2 1 5 5 C 1.50704 * 126.77293 * 179.90766 * 4 3 2 6 6 C 1.50691 * 115.55204 * 329.44688 * 5 4 3 7 7 O 1.21286 * 120.00081 * 123.77759 * 6 5 4 8 8 N 1.34780 * 120.00568 * 303.77925 * 6 5 4 9 9 C 1.46496 * 120.00579 * 174.67268 * 8 6 5 10 10 H 1.09006 * 109.46844 * 34.99735 * 9 8 6 11 11 C 1.52997 * 109.47003 * 275.00410 * 9 8 6 12 12 C 1.53000 * 109.47023 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47376 * 59.99691 * 12 11 9 14 14 C 1.52994 * 109.46807 * 300.00322 * 13 12 11 15 15 C 1.52992 * 109.47311 * 155.00081 * 9 8 6 16 16 H 1.08996 * 109.47501 * 60.00041 * 15 9 8 17 17 C 1.53005 * 109.46952 * 299.99977 * 15 9 8 18 18 N 1.46503 * 109.46702 * 174.99998 * 17 15 9 19 19 C 1.36945 * 119.99479 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00365 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00133 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99834 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46926 * 89.99753 * 23 21 19 25 25 H 1.48498 * 109.46707 * 209.99815 * 23 21 19 26 26 H 1.48503 * 109.47139 * 329.99698 * 23 21 19 27 27 C 1.53001 * 117.49627 * 115.12157 * 5 4 3 28 28 C 1.53008 * 117.49857 * 183.78029 * 5 4 3 29 29 O 1.34038 * 106.44850 * 359.64395 * 4 3 2 30 30 N 1.20918 * 111.56643 * 0.23906 * 29 4 3 31 31 H 1.09006 * 109.47060 * 270.29803 * 1 2 3 32 32 H 1.09005 * 109.47197 * 30.29259 * 1 2 3 33 33 H 1.08995 * 109.47457 * 150.29282 * 1 2 3 34 34 H 1.08000 * 128.00191 * 359.97438 * 3 2 1 35 35 H 0.96999 * 119.99074 * 354.67120 * 8 6 5 36 36 H 1.09005 * 109.47224 * 299.99648 * 11 9 8 37 37 H 1.08997 * 109.47911 * 59.99567 * 11 9 8 38 38 H 1.09003 * 109.47129 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47421 * 299.99352 * 12 11 9 40 40 H 1.09005 * 109.46617 * 59.99741 * 13 12 11 41 41 H 1.08998 * 109.47274 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.47321 * 299.99630 * 14 13 12 43 43 H 1.09004 * 109.46811 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.47406 * 294.99646 * 17 15 9 45 45 H 1.08997 * 109.47027 * 54.99954 * 17 15 9 46 46 H 0.96993 * 120.00480 * 359.97438 * 18 17 15 47 47 H 0.96995 * 120.00100 * 179.97438 * 22 21 19 48 48 H 1.09000 * 117.49436 * 214.99764 * 27 5 4 49 49 H 1.08997 * 117.50082 * 0.02562 * 27 5 4 50 50 H 1.09002 * 117.49414 * 359.97408 * 28 5 4 51 51 H 1.08991 * 117.50192 * 144.99809 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6066 -0.0022 5 6 4.9022 1.3694 -0.0051 6 6 4.8688 2.7078 -0.6968 7 8 5.1967 3.7091 -0.0962 8 7 4.4747 2.7922 -1.9829 9 6 4.3301 4.1032 -2.6203 10 1 5.0934 4.7801 -2.2362 11 6 2.9432 4.6705 -2.3111 12 6 2.7925 6.0401 -2.9763 13 6 2.9574 5.8927 -4.4902 14 6 4.3442 5.3255 -4.7993 15 6 4.4947 3.9553 -4.1341 16 1 3.7316 3.2785 -4.5182 17 6 5.8817 3.3881 -4.4433 18 7 5.9961 3.1345 -5.8816 19 6 7.1573 2.6227 -6.3964 20 1 7.9886 2.4056 -5.7420 21 6 7.2655 2.3820 -7.7593 22 7 8.3817 1.8906 -8.2542 23 14 5.8273 2.7568 -8.8910 24 1 5.9346 4.1543 -9.3814 25 1 5.8502 1.8237 -10.0460 26 1 4.5540 2.5902 -8.1452 27 6 5.8054 1.2306 1.2220 28 6 6.1967 0.5589 -0.0968 29 8 3.4536 -0.7254 0.0047 30 7 2.2867 -1.0424 0.0058 31 1 -0.3633 0.0053 1.0277 32 1 -0.3634 0.8874 -0.5184 33 1 -0.3634 -0.8925 -0.5092 34 1 2.0710 2.1742 -0.0004 35 1 4.2867 1.9847 -2.4864 36 1 2.1799 3.9937 -2.6952 37 1 2.8258 4.7759 -1.2326 38 1 1.8043 6.4440 -2.7563 39 1 3.5556 6.7167 -2.5918 40 1 2.1941 5.2161 -4.8746 41 1 2.8495 6.8684 -4.9641 42 1 5.1075 6.0021 -4.4149 43 1 4.4615 5.2201 -5.8779 44 1 6.6438 4.1056 -4.1391 45 1 6.0226 2.4552 -3.8975 46 1 5.2494 3.3291 -6.4693 47 1 8.4572 1.7220 -9.2064 48 1 6.3756 2.1074 1.5289 49 1 5.4598 0.5873 2.0312 50 1 6.1082 -0.5260 -0.1545 51 1 7.0242 0.9938 -0.6572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268774373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:03 Heat of formation + Delta-G solvation = 47.090135 kcal Electronic energy + Delta-G solvation = -31686.177269 eV Core-core repulsion = 27589.372471 eV Total energy + Delta-G solvation = -4096.804798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.19990 -40.56156 -38.82291 -36.79818 -35.06118 -34.84813 -34.28679 -32.00342 -31.74380 -30.09825 -29.64345 -28.96793 -25.77786 -24.98014 -23.58317 -22.94732 -22.71210 -22.07939 -21.03914 -20.76023 -20.21265 -19.35457 -18.22685 -17.81747 -17.62265 -16.77619 -16.38143 -15.54678 -15.08421 -14.93669 -14.53305 -14.43167 -14.31217 -14.00064 -13.84967 -13.69091 -13.55716 -13.45397 -13.29326 -12.97373 -12.82611 -12.73421 -12.62565 -12.10689 -11.90874 -11.78667 -11.65505 -11.41568 -11.29425 -11.11166 -11.09211 -11.01445 -10.85628 -10.54321 -10.40995 -10.27170 -10.16896 -10.10523 -9.92540 -9.60523 -9.43759 -9.05919 -8.90168 -7.25265 -5.78900 -3.14444 1.11411 1.93310 2.11314 2.74740 3.03121 3.33982 3.36358 3.42627 3.44779 3.89900 3.93747 4.34933 4.42897 4.51192 4.56396 4.60998 4.72134 4.79063 4.89852 4.93626 5.06159 5.14153 5.17766 5.20390 5.26820 5.34622 5.40467 5.44881 5.45794 5.47512 5.49596 5.52537 5.55229 5.61575 5.71151 5.78136 5.79677 5.81508 5.96198 6.01169 6.07691 6.11659 6.20356 6.38651 6.39012 6.45736 6.62242 6.74870 7.37777 7.97266 7.99292 8.04129 8.40036 9.19039 9.91266 10.10988 11.39628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003279 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.439121 B = 8536.974044 C = 9285.904380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.218 4.218 4 C 0.014 3.986 5 C -0.100 4.100 6 C 0.564 3.436 7 O -0.528 6.528 8 N -0.710 5.710 9 C 0.154 3.846 10 H 0.093 0.907 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.108 4.108 15 C -0.105 4.105 16 H 0.074 0.926 17 C 0.163 3.837 18 N -0.754 5.754 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.124 4.124 28 C -0.141 4.141 29 O 0.104 5.896 30 N -0.363 5.363 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.028 0.972 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.119 0.881 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 1.688 19.185 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C -0.240 4.240 4 C -0.049 4.049 5 C -0.104 4.104 6 C 0.348 3.652 7 O -0.404 6.404 8 N -0.359 5.359 9 C 0.050 3.950 10 H 0.111 0.889 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.124 4.124 16 H 0.092 0.908 17 C 0.036 3.964 18 N -0.400 5.400 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.162 4.162 28 C -0.178 4.178 29 O 0.038 5.962 30 N -0.067 5.067 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.187 0.813 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.137 0.863 49 H 0.126 0.874 50 H 0.134 0.866 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.094 1.001 19.598 24.757 hybrid contribution -1.225 0.574 -1.307 1.880 sum -16.318 1.575 18.291 24.563 Atomic orbital electron populations 1.20176 0.85820 1.03960 1.03378 1.23571 0.99087 0.88610 1.02677 1.22310 0.90802 1.01153 1.09691 1.22865 0.95475 0.83686 1.02916 1.19491 0.87983 0.95229 1.07747 1.18802 0.76798 0.87720 0.81859 1.90722 1.47822 1.36260 1.65584 1.46008 1.68076 1.10172 1.11687 1.21039 0.97699 0.83894 0.92411 0.88925 1.21905 0.96835 0.97117 1.00625 1.21477 1.01590 0.96560 0.95603 1.21607 0.97780 1.00957 0.95654 1.21522 0.96520 0.95274 1.01339 1.21660 0.99721 0.98159 0.92862 0.90756 1.20639 0.92546 0.97157 0.86069 1.42709 1.15599 1.79017 1.02673 1.19051 0.91675 1.34361 0.92265 0.89285 1.24665 0.96752 1.01124 0.96538 1.69695 1.25406 1.50446 1.12634 0.86572 0.82954 0.77983 0.81159 1.21034 1.21726 1.20411 1.23192 0.98737 1.03532 0.90737 1.23276 0.94131 1.00106 1.00277 1.84817 1.21747 1.22031 1.67622 1.73875 0.89110 1.23809 1.19922 0.90152 0.89906 0.90433 0.81315 0.76087 0.91832 0.91805 0.92029 0.91693 0.92096 0.91937 0.91480 0.90912 0.95446 0.95569 0.80660 0.93050 0.86264 0.87420 0.86627 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.47 36.00 0.38 -0.16 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 C -0.22 -2.20 10.60 -39.38 -0.42 -2.62 16 4 C 0.01 0.15 6.74 -35.30 -0.24 -0.09 16 5 C -0.10 -1.04 2.44 -156.81 -0.38 -1.42 16 6 C 0.56 6.96 6.74 -10.99 -0.07 6.89 16 7 O -0.53 -7.99 16.12 5.55 0.09 -7.90 16 8 N -0.71 -8.34 4.27 -53.81 -0.23 -8.57 16 9 C 0.15 1.88 1.94 -67.94 -0.13 1.75 16 10 H 0.09 1.29 7.51 -51.93 -0.39 0.90 16 11 C -0.13 -1.31 5.49 -26.73 -0.15 -1.46 16 12 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 13 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 14 C -0.11 -1.46 5.08 -26.71 -0.14 -1.59 16 15 C -0.10 -1.46 1.80 -90.60 -0.16 -1.63 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C 0.16 3.00 5.57 -4.04 -0.02 2.97 16 18 N -0.75 -17.29 5.13 -59.90 -0.31 -17.60 16 19 C -0.24 -6.80 10.47 -15.05 -0.16 -6.96 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 23 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 27 C -0.12 -1.09 9.75 -26.69 -0.26 -1.35 16 28 C -0.14 -1.27 9.89 -26.69 -0.26 -1.53 16 29 O 0.10 1.23 10.97 17.18 0.19 1.42 16 30 N -0.36 -4.48 12.07 33.42 0.40 -4.08 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.40 4.58 8.40 -40.82 -0.34 4.23 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.49 7.30 -51.93 -0.38 0.11 16 46 H 0.36 8.05 4.71 -40.82 -0.19 7.85 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 48 H 0.12 1.09 7.84 -51.93 -0.41 0.68 16 49 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.12 0.93 8.00 -51.93 -0.42 0.52 16 51 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -33.17 412.02 -9.05 -42.22 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.43 Total: 9.92 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.03 Total: -10.29 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.64 Total: -58.66 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.28 Total: -6.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.17 -9.05 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.307 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds