Wall clock time and date at job start Wed Apr 1 2020 04:34:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.41379 * 126.80663 * 2 1
4 4 C 1.35444 * 103.98529 * 180.09586 * 3 2 1
5 5 C 1.50704 * 126.77293 * 179.90766 * 4 3 2
6 6 C 1.50691 * 115.55204 * 329.44688 * 5 4 3
7 7 O 1.21286 * 120.00081 * 123.77759 * 6 5 4
8 8 N 1.34780 * 120.00568 * 303.77925 * 6 5 4
9 9 C 1.46496 * 120.00579 * 174.67268 * 8 6 5
10 10 H 1.09006 * 109.46844 * 34.99735 * 9 8 6
11 11 C 1.52997 * 109.47003 * 275.00410 * 9 8 6
12 12 C 1.53000 * 109.47023 * 179.97438 * 11 9 8
13 13 C 1.53005 * 109.47376 * 59.99691 * 12 11 9
14 14 C 1.52994 * 109.46807 * 300.00322 * 13 12 11
15 15 C 1.52992 * 109.47311 * 155.00081 * 9 8 6
16 16 H 1.08996 * 109.47501 * 60.00041 * 15 9 8
17 17 C 1.53005 * 109.46952 * 299.99977 * 15 9 8
18 18 N 1.46503 * 109.46702 * 174.99998 * 17 15 9
19 19 C 1.36945 * 119.99479 * 179.97438 * 18 17 15
20 20 H 1.08001 * 120.00365 * 0.02562 * 19 18 17
21 21 C 1.38817 * 119.99782 * 179.97438 * 19 18 17
22 22 N 1.31615 * 120.00133 * 179.97438 * 21 19 18
23 23 Si 1.86806 * 119.99834 * 0.02562 * 21 19 18
24 24 H 1.48495 * 109.46926 * 89.99753 * 23 21 19
25 25 H 1.48498 * 109.46707 * 209.99815 * 23 21 19
26 26 H 1.48503 * 109.47139 * 329.99698 * 23 21 19
27 27 C 1.53001 * 117.49627 * 115.12157 * 5 4 3
28 28 C 1.53008 * 117.49857 * 183.78029 * 5 4 3
29 29 O 1.34038 * 106.44850 * 359.64395 * 4 3 2
30 30 N 1.20918 * 111.56643 * 0.23906 * 29 4 3
31 31 H 1.09006 * 109.47060 * 270.29803 * 1 2 3
32 32 H 1.09005 * 109.47197 * 30.29259 * 1 2 3
33 33 H 1.08995 * 109.47457 * 150.29282 * 1 2 3
34 34 H 1.08000 * 128.00191 * 359.97438 * 3 2 1
35 35 H 0.96999 * 119.99074 * 354.67120 * 8 6 5
36 36 H 1.09005 * 109.47224 * 299.99648 * 11 9 8
37 37 H 1.08997 * 109.47911 * 59.99567 * 11 9 8
38 38 H 1.09003 * 109.47129 * 179.97438 * 12 11 9
39 39 H 1.08996 * 109.47421 * 299.99352 * 12 11 9
40 40 H 1.09005 * 109.46617 * 59.99741 * 13 12 11
41 41 H 1.08998 * 109.47274 * 179.97438 * 13 12 11
42 42 H 1.09005 * 109.47321 * 299.99630 * 14 13 12
43 43 H 1.09004 * 109.46811 * 179.97438 * 14 13 12
44 44 H 1.08997 * 109.47406 * 294.99646 * 17 15 9
45 45 H 1.08997 * 109.47027 * 54.99954 * 17 15 9
46 46 H 0.96993 * 120.00480 * 359.97438 * 18 17 15
47 47 H 0.96995 * 120.00100 * 179.97438 * 22 21 19
48 48 H 1.09000 * 117.49436 * 214.99764 * 27 5 4
49 49 H 1.08997 * 117.50082 * 0.02562 * 27 5 4
50 50 H 1.09002 * 117.49414 * 359.97408 * 28 5 4
51 51 H 1.08991 * 117.50192 * 144.99809 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3540 1.1320 0.0000
4 6 3.6024 0.6066 -0.0022
5 6 4.9022 1.3694 -0.0051
6 6 4.8688 2.7078 -0.6968
7 8 5.1967 3.7091 -0.0962
8 7 4.4747 2.7922 -1.9829
9 6 4.3301 4.1032 -2.6203
10 1 5.0934 4.7801 -2.2362
11 6 2.9432 4.6705 -2.3111
12 6 2.7925 6.0401 -2.9763
13 6 2.9574 5.8927 -4.4902
14 6 4.3442 5.3255 -4.7993
15 6 4.4947 3.9553 -4.1341
16 1 3.7316 3.2785 -4.5182
17 6 5.8817 3.3881 -4.4433
18 7 5.9961 3.1345 -5.8816
19 6 7.1573 2.6227 -6.3964
20 1 7.9886 2.4056 -5.7420
21 6 7.2655 2.3820 -7.7593
22 7 8.3817 1.8906 -8.2542
23 14 5.8273 2.7568 -8.8910
24 1 5.9346 4.1543 -9.3814
25 1 5.8502 1.8237 -10.0460
26 1 4.5540 2.5902 -8.1452
27 6 5.8054 1.2306 1.2220
28 6 6.1967 0.5589 -0.0968
29 8 3.4536 -0.7254 0.0047
30 7 2.2867 -1.0424 0.0058
31 1 -0.3633 0.0053 1.0277
32 1 -0.3634 0.8874 -0.5184
33 1 -0.3634 -0.8925 -0.5092
34 1 2.0710 2.1742 -0.0004
35 1 4.2867 1.9847 -2.4864
36 1 2.1799 3.9937 -2.6952
37 1 2.8258 4.7759 -1.2326
38 1 1.8043 6.4440 -2.7563
39 1 3.5556 6.7167 -2.5918
40 1 2.1941 5.2161 -4.8746
41 1 2.8495 6.8684 -4.9641
42 1 5.1075 6.0021 -4.4149
43 1 4.4615 5.2201 -5.8779
44 1 6.6438 4.1056 -4.1391
45 1 6.0226 2.4552 -3.8975
46 1 5.2494 3.3291 -6.4693
47 1 8.4572 1.7220 -9.2064
48 1 6.3756 2.1074 1.5289
49 1 5.4598 0.5873 2.0312
50 1 6.1082 -0.5260 -0.1545
51 1 7.0242 0.9938 -0.6572
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001268774373.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:34:02
Heat of formation + Delta-G solvation = 27.138926 kcal
Electronic energy + Delta-G solvation = -31687.042418 eV
Core-core repulsion = 27589.372471 eV
Total energy + Delta-G solvation = -4097.669948 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-46.01164 -41.55360 -39.84047 -37.71119 -36.57524 -35.81269 -35.27166 -33.85322
-32.55502 -31.62541 -30.64741 -29.60685 -27.24304 -25.96113 -24.47389 -24.34720
-23.61605 -23.09082 -22.11872 -21.95817 -21.13801 -20.29379 -19.73118 -18.98289
-18.64913 -17.63990 -17.43326 -16.65142 -16.43564 -16.09566 -15.89233 -15.50684
-15.47976 -15.06824 -14.77285 -14.74147 -14.63221 -14.30777 -14.22008 -14.20185
-13.94481 -13.75364 -13.68530 -13.41346 -13.05864 -12.79610 -12.68471 -12.63214
-12.43137 -12.22196 -12.19506 -12.14088 -11.96141 -11.88199 -11.85185 -11.50160
-11.36267 -11.17165 -11.01998 -11.01035 -10.89038 -10.27017 -10.05041 -9.30282
-8.03479 -5.37183 0.30461 1.16441 1.20152 1.36210 1.40631 1.47828
1.82318 2.16764 2.47537 2.64637 3.15630 3.21470 3.27975 3.38426
3.53071 3.65601 3.72210 3.78638 3.85340 3.97915 3.99878 4.21635
4.23934 4.28949 4.41313 4.43568 4.47869 4.50879 4.54230 4.58786
4.63818 4.67664 4.80799 4.83916 4.85240 4.86451 4.89236 5.03335
5.07271 5.08172 5.14248 5.21107 5.22874 5.28150 5.29345 5.39333
5.45663 5.58172 5.74456 6.20125 6.39347 7.05846 7.07221 7.19249
7.82379 8.02861 9.18255
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009399 B = 0.003279 C = 0.003015
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2978.439121 B = 8536.974044 C = 9285.904380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.020 3.980
3 C -0.219 4.219
4 C 0.013 3.987
5 C -0.108 4.108
6 C 0.567 3.433
7 O -0.558 6.558
8 N -0.706 5.706
9 C 0.160 3.840
10 H 0.073 0.927
11 C -0.118 4.118
12 C -0.111 4.111
13 C -0.115 4.115
14 C -0.110 4.110
15 C -0.091 4.091
16 H 0.083 0.917
17 C 0.162 3.838
18 N -0.753 5.753
19 C -0.235 4.235
20 H 0.052 0.948
21 C -0.063 4.063
22 N -0.985 5.985
23 Si 0.954 3.046
24 H -0.277 1.277
25 H -0.296 1.296
26 H -0.248 1.248
27 C -0.114 4.114
28 C -0.138 4.138
29 O 0.091 5.909
30 N -0.391 5.391
31 H 0.094 0.906
32 H 0.101 0.899
33 H 0.077 0.923
34 H 0.182 0.818
35 H 0.408 0.592
36 H 0.076 0.924
37 H 0.063 0.937
38 H 0.083 0.917
39 H 0.059 0.941
40 H 0.069 0.931
41 H 0.073 0.927
42 H 0.059 0.941
43 H 0.055 0.945
44 H 0.012 0.988
45 H 0.025 0.975
46 H 0.367 0.633
47 H 0.258 0.742
48 H 0.115 0.885
49 H 0.124 0.876
50 H 0.126 0.874
51 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.747 2.496 19.726 27.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.138 4.138
3 C -0.240 4.240
4 C -0.051 4.051
5 C -0.113 4.113
6 C 0.352 3.648
7 O -0.436 6.436
8 N -0.355 5.355
9 C 0.055 3.945
10 H 0.092 0.908
11 C -0.156 4.156
12 C -0.149 4.149
13 C -0.153 4.153
14 C -0.148 4.148
15 C -0.110 4.110
16 H 0.102 0.898
17 C 0.036 3.964
18 N -0.399 5.399
19 C -0.366 4.366
20 H 0.070 0.930
21 C -0.254 4.254
22 N -0.635 5.635
23 Si 0.781 3.219
24 H -0.203 1.203
25 H -0.223 1.223
26 H -0.173 1.173
27 C -0.151 4.151
28 C -0.175 4.175
29 O 0.027 5.973
30 N -0.099 5.099
31 H 0.113 0.887
32 H 0.119 0.881
33 H 0.096 0.904
34 H 0.199 0.801
35 H 0.243 0.757
36 H 0.095 0.905
37 H 0.081 0.919
38 H 0.102 0.898
39 H 0.078 0.922
40 H 0.088 0.912
41 H 0.092 0.908
42 H 0.078 0.922
43 H 0.074 0.926
44 H 0.030 0.970
45 H 0.043 0.957
46 H 0.201 0.799
47 H 0.067 0.933
48 H 0.134 0.866
49 H 0.143 0.857
50 H 0.144 0.856
51 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -18.541 1.822 20.175 27.461
hybrid contribution -0.050 0.328 -1.391 1.430
sum -18.591 2.150 18.784 26.516
Atomic orbital electron populations
1.20346 0.83577 1.04891 1.04594 1.24130 1.00536 0.88103 1.01075
1.22506 0.90488 1.01681 1.09337 1.22916 0.95723 0.83524 1.02918
1.19392 0.88540 0.94465 1.08871 1.19033 0.75962 0.88047 0.81761
1.90707 1.49217 1.37477 1.66238 1.46005 1.67722 1.10176 1.11642
1.20940 0.98772 0.83877 0.90888 0.90837 1.21839 0.95320 0.97696
1.00750 1.21474 1.02700 0.96015 0.94716 1.21559 0.95736 1.01540
0.96429 1.21524 0.98528 0.94781 1.00003 1.21521 0.96664 0.98544
0.94266 0.89822 1.20760 0.95264 0.96898 0.83515 1.42655 1.14137
1.78498 1.04594 1.19011 0.92292 1.33332 0.92010 0.92983 1.25519
0.99909 1.01660 0.98352 1.69888 1.28165 1.52537 1.12910 0.85419
0.80285 0.77650 0.78519 1.20295 1.22321 1.17253 1.23270 0.97647
1.03439 0.90780 1.23326 0.93137 1.00572 1.00463 1.84788 1.21817
1.22435 1.68221 1.73874 0.89488 1.24906 1.21619 0.88721 0.88054
0.90389 0.80115 0.75692 0.90493 0.91851 0.89841 0.92197 0.91190
0.90799 0.92202 0.92629 0.96958 0.95697 0.79894 0.93324 0.86650
0.85750 0.85565 0.87227
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.89 10.47 71.23 0.75 -0.14 16
2 C 0.02 0.38 7.33 43.58 0.32 0.70 16
3 C -0.22 -4.03 10.60 22.40 0.24 -3.79 16
4 C 0.01 0.26 6.74 25.04 0.17 0.43 16
5 C -0.11 -2.16 2.44 -53.67 -0.13 -2.29 16
6 C 0.57 13.66 6.74 87.65 0.59 14.25 16
7 O -0.56 -16.76 16.12 -3.05 -0.05 -16.80 16
8 N -0.71 -15.92 4.27 -442.55 -1.89 -17.81 16
9 C 0.16 3.71 1.94 44.99 0.09 3.80 16
10 H 0.07 2.03 7.51 -2.38 -0.02 2.01 16
11 C -0.12 -2.12 5.49 30.59 0.17 -1.95 16
12 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16
13 C -0.12 -2.10 5.92 30.59 0.18 -1.92 16
14 C -0.11 -2.77 5.08 30.61 0.16 -2.62 16
15 C -0.09 -2.40 1.80 -10.78 -0.02 -2.42 16
16 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
17 C 0.16 5.95 5.57 86.38 0.48 6.43 16
18 N -0.75 -34.25 5.13 -343.43 -1.76 -36.01 16
19 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16
20 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16
21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16
22 N -0.98 -63.22 13.97 21.65 0.30 -62.92 16
23 Si 0.95 44.73 27.74 68.60 1.90 46.63 16
24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16
26 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16
27 C -0.11 -1.91 9.75 30.62 0.30 -1.61 16
28 C -0.14 -2.43 9.89 30.62 0.30 -2.13 16
29 O 0.09 2.09 10.97 71.65 0.79 2.87 16
30 N -0.39 -9.31 12.07 -49.56 -0.60 -9.91 16
31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16
32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16
33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
34 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16
35 H 0.41 8.77 8.40 -92.71 -0.78 7.99 16
36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16
41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16
43 H 0.05 1.59 7.18 -2.39 -0.02 1.58 16
44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
45 H 0.03 0.93 7.30 -2.39 -0.02 0.92 16
46 H 0.37 15.73 4.71 -92.71 -0.44 15.29 16
47 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16
48 H 0.12 2.05 7.84 -2.39 -0.02 2.03 16
49 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16
50 H 0.13 1.96 8.00 -2.39 -0.02 1.94 16
51 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16
Total: -1.00 -73.19 412.02 3.47 -69.72
By element:
Atomic # 1 Polarization: 35.24 SS G_CDS: -0.33 Total: 34.91 kcal
Atomic # 6 Polarization: -15.79 SS G_CDS: 5.11 Total: -10.68 kcal
Atomic # 7 Polarization: -122.70 SS G_CDS: -3.95 Total: -126.65 kcal
Atomic # 8 Polarization: -14.67 SS G_CDS: 0.74 Total: -13.93 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal
Total: -73.19 3.47 -69.72 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268774373.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal
(2) G-P(sol) polarization free energy of solvation -73.191 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds