Wall clock time and date at job start Wed Apr 1 2020 04:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41379 * 126.80663 * 2 1 4 4 C 1.35444 * 103.98529 * 180.09586 * 3 2 1 5 5 C 1.50704 * 126.77293 * 179.90766 * 4 3 2 6 6 C 1.50691 * 115.55204 * 329.44688 * 5 4 3 7 7 O 1.21286 * 120.00081 * 123.77759 * 6 5 4 8 8 N 1.34780 * 120.00568 * 303.77925 * 6 5 4 9 9 C 1.46496 * 120.00579 * 174.67268 * 8 6 5 10 10 H 1.09006 * 109.46844 * 34.99735 * 9 8 6 11 11 C 1.52997 * 109.47003 * 275.00410 * 9 8 6 12 12 C 1.53000 * 109.47023 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47376 * 59.99691 * 12 11 9 14 14 C 1.52994 * 109.46807 * 300.00322 * 13 12 11 15 15 C 1.52992 * 109.47311 * 155.00081 * 9 8 6 16 16 H 1.08996 * 109.47501 * 60.00041 * 15 9 8 17 17 C 1.53005 * 109.46952 * 299.99977 * 15 9 8 18 18 N 1.46503 * 109.46702 * 174.99998 * 17 15 9 19 19 C 1.36945 * 119.99479 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00365 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00133 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99834 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46926 * 89.99753 * 23 21 19 25 25 H 1.48498 * 109.46707 * 209.99815 * 23 21 19 26 26 H 1.48503 * 109.47139 * 329.99698 * 23 21 19 27 27 C 1.53001 * 117.49627 * 115.12157 * 5 4 3 28 28 C 1.53008 * 117.49857 * 183.78029 * 5 4 3 29 29 O 1.34038 * 106.44850 * 359.64395 * 4 3 2 30 30 N 1.20918 * 111.56643 * 0.23906 * 29 4 3 31 31 H 1.09006 * 109.47060 * 270.29803 * 1 2 3 32 32 H 1.09005 * 109.47197 * 30.29259 * 1 2 3 33 33 H 1.08995 * 109.47457 * 150.29282 * 1 2 3 34 34 H 1.08000 * 128.00191 * 359.97438 * 3 2 1 35 35 H 0.96999 * 119.99074 * 354.67120 * 8 6 5 36 36 H 1.09005 * 109.47224 * 299.99648 * 11 9 8 37 37 H 1.08997 * 109.47911 * 59.99567 * 11 9 8 38 38 H 1.09003 * 109.47129 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47421 * 299.99352 * 12 11 9 40 40 H 1.09005 * 109.46617 * 59.99741 * 13 12 11 41 41 H 1.08998 * 109.47274 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.47321 * 299.99630 * 14 13 12 43 43 H 1.09004 * 109.46811 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.47406 * 294.99646 * 17 15 9 45 45 H 1.08997 * 109.47027 * 54.99954 * 17 15 9 46 46 H 0.96993 * 120.00480 * 359.97438 * 18 17 15 47 47 H 0.96995 * 120.00100 * 179.97438 * 22 21 19 48 48 H 1.09000 * 117.49436 * 214.99764 * 27 5 4 49 49 H 1.08997 * 117.50082 * 0.02562 * 27 5 4 50 50 H 1.09002 * 117.49414 * 359.97408 * 28 5 4 51 51 H 1.08991 * 117.50192 * 144.99809 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6066 -0.0022 5 6 4.9022 1.3694 -0.0051 6 6 4.8688 2.7078 -0.6968 7 8 5.1967 3.7091 -0.0962 8 7 4.4747 2.7922 -1.9829 9 6 4.3301 4.1032 -2.6203 10 1 5.0934 4.7801 -2.2362 11 6 2.9432 4.6705 -2.3111 12 6 2.7925 6.0401 -2.9763 13 6 2.9574 5.8927 -4.4902 14 6 4.3442 5.3255 -4.7993 15 6 4.4947 3.9553 -4.1341 16 1 3.7316 3.2785 -4.5182 17 6 5.8817 3.3881 -4.4433 18 7 5.9961 3.1345 -5.8816 19 6 7.1573 2.6227 -6.3964 20 1 7.9886 2.4056 -5.7420 21 6 7.2655 2.3820 -7.7593 22 7 8.3817 1.8906 -8.2542 23 14 5.8273 2.7568 -8.8910 24 1 5.9346 4.1543 -9.3814 25 1 5.8502 1.8237 -10.0460 26 1 4.5540 2.5902 -8.1452 27 6 5.8054 1.2306 1.2220 28 6 6.1967 0.5589 -0.0968 29 8 3.4536 -0.7254 0.0047 30 7 2.2867 -1.0424 0.0058 31 1 -0.3633 0.0053 1.0277 32 1 -0.3634 0.8874 -0.5184 33 1 -0.3634 -0.8925 -0.5092 34 1 2.0710 2.1742 -0.0004 35 1 4.2867 1.9847 -2.4864 36 1 2.1799 3.9937 -2.6952 37 1 2.8258 4.7759 -1.2326 38 1 1.8043 6.4440 -2.7563 39 1 3.5556 6.7167 -2.5918 40 1 2.1941 5.2161 -4.8746 41 1 2.8495 6.8684 -4.9641 42 1 5.1075 6.0021 -4.4149 43 1 4.4615 5.2201 -5.8779 44 1 6.6438 4.1056 -4.1391 45 1 6.0226 2.4552 -3.8975 46 1 5.2494 3.3291 -6.4693 47 1 8.4572 1.7220 -9.2064 48 1 6.3756 2.1074 1.5289 49 1 5.4598 0.5873 2.0312 50 1 6.1082 -0.5260 -0.1545 51 1 7.0242 0.9938 -0.6572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268774373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:02 Heat of formation + Delta-G solvation = 27.138926 kcal Electronic energy + Delta-G solvation = -31687.042418 eV Core-core repulsion = 27589.372471 eV Total energy + Delta-G solvation = -4097.669948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.01164 -41.55360 -39.84047 -37.71119 -36.57524 -35.81269 -35.27166 -33.85322 -32.55502 -31.62541 -30.64741 -29.60685 -27.24304 -25.96113 -24.47389 -24.34720 -23.61605 -23.09082 -22.11872 -21.95817 -21.13801 -20.29379 -19.73118 -18.98289 -18.64913 -17.63990 -17.43326 -16.65142 -16.43564 -16.09566 -15.89233 -15.50684 -15.47976 -15.06824 -14.77285 -14.74147 -14.63221 -14.30777 -14.22008 -14.20185 -13.94481 -13.75364 -13.68530 -13.41346 -13.05864 -12.79610 -12.68471 -12.63214 -12.43137 -12.22196 -12.19506 -12.14088 -11.96141 -11.88199 -11.85185 -11.50160 -11.36267 -11.17165 -11.01998 -11.01035 -10.89038 -10.27017 -10.05041 -9.30282 -8.03479 -5.37183 0.30461 1.16441 1.20152 1.36210 1.40631 1.47828 1.82318 2.16764 2.47537 2.64637 3.15630 3.21470 3.27975 3.38426 3.53071 3.65601 3.72210 3.78638 3.85340 3.97915 3.99878 4.21635 4.23934 4.28949 4.41313 4.43568 4.47869 4.50879 4.54230 4.58786 4.63818 4.67664 4.80799 4.83916 4.85240 4.86451 4.89236 5.03335 5.07271 5.08172 5.14248 5.21107 5.22874 5.28150 5.29345 5.39333 5.45663 5.58172 5.74456 6.20125 6.39347 7.05846 7.07221 7.19249 7.82379 8.02861 9.18255 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003279 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.439121 B = 8536.974044 C = 9285.904380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 C -0.219 4.219 4 C 0.013 3.987 5 C -0.108 4.108 6 C 0.567 3.433 7 O -0.558 6.558 8 N -0.706 5.706 9 C 0.160 3.840 10 H 0.073 0.927 11 C -0.118 4.118 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.091 4.091 16 H 0.083 0.917 17 C 0.162 3.838 18 N -0.753 5.753 19 C -0.235 4.235 20 H 0.052 0.948 21 C -0.063 4.063 22 N -0.985 5.985 23 Si 0.954 3.046 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.248 1.248 27 C -0.114 4.114 28 C -0.138 4.138 29 O 0.091 5.909 30 N -0.391 5.391 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.182 0.818 35 H 0.408 0.592 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.012 0.988 45 H 0.025 0.975 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.126 0.874 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 2.496 19.726 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C -0.240 4.240 4 C -0.051 4.051 5 C -0.113 4.113 6 C 0.352 3.648 7 O -0.436 6.436 8 N -0.355 5.355 9 C 0.055 3.945 10 H 0.092 0.908 11 C -0.156 4.156 12 C -0.149 4.149 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.110 4.110 16 H 0.102 0.898 17 C 0.036 3.964 18 N -0.399 5.399 19 C -0.366 4.366 20 H 0.070 0.930 21 C -0.254 4.254 22 N -0.635 5.635 23 Si 0.781 3.219 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.173 1.173 27 C -0.151 4.151 28 C -0.175 4.175 29 O 0.027 5.973 30 N -0.099 5.099 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.199 0.801 35 H 0.243 0.757 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.134 0.866 49 H 0.143 0.857 50 H 0.144 0.856 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.541 1.822 20.175 27.461 hybrid contribution -0.050 0.328 -1.391 1.430 sum -18.591 2.150 18.784 26.516 Atomic orbital electron populations 1.20346 0.83577 1.04891 1.04594 1.24130 1.00536 0.88103 1.01075 1.22506 0.90488 1.01681 1.09337 1.22916 0.95723 0.83524 1.02918 1.19392 0.88540 0.94465 1.08871 1.19033 0.75962 0.88047 0.81761 1.90707 1.49217 1.37477 1.66238 1.46005 1.67722 1.10176 1.11642 1.20940 0.98772 0.83877 0.90888 0.90837 1.21839 0.95320 0.97696 1.00750 1.21474 1.02700 0.96015 0.94716 1.21559 0.95736 1.01540 0.96429 1.21524 0.98528 0.94781 1.00003 1.21521 0.96664 0.98544 0.94266 0.89822 1.20760 0.95264 0.96898 0.83515 1.42655 1.14137 1.78498 1.04594 1.19011 0.92292 1.33332 0.92010 0.92983 1.25519 0.99909 1.01660 0.98352 1.69888 1.28165 1.52537 1.12910 0.85419 0.80285 0.77650 0.78519 1.20295 1.22321 1.17253 1.23270 0.97647 1.03439 0.90780 1.23326 0.93137 1.00572 1.00463 1.84788 1.21817 1.22435 1.68221 1.73874 0.89488 1.24906 1.21619 0.88721 0.88054 0.90389 0.80115 0.75692 0.90493 0.91851 0.89841 0.92197 0.91190 0.90799 0.92202 0.92629 0.96958 0.95697 0.79894 0.93324 0.86650 0.85750 0.85565 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.47 71.23 0.75 -0.14 16 2 C 0.02 0.38 7.33 43.58 0.32 0.70 16 3 C -0.22 -4.03 10.60 22.40 0.24 -3.79 16 4 C 0.01 0.26 6.74 25.04 0.17 0.43 16 5 C -0.11 -2.16 2.44 -53.67 -0.13 -2.29 16 6 C 0.57 13.66 6.74 87.65 0.59 14.25 16 7 O -0.56 -16.76 16.12 -3.05 -0.05 -16.80 16 8 N -0.71 -15.92 4.27 -442.55 -1.89 -17.81 16 9 C 0.16 3.71 1.94 44.99 0.09 3.80 16 10 H 0.07 2.03 7.51 -2.38 -0.02 2.01 16 11 C -0.12 -2.12 5.49 30.59 0.17 -1.95 16 12 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16 13 C -0.12 -2.10 5.92 30.59 0.18 -1.92 16 14 C -0.11 -2.77 5.08 30.61 0.16 -2.62 16 15 C -0.09 -2.40 1.80 -10.78 -0.02 -2.42 16 16 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 17 C 0.16 5.95 5.57 86.38 0.48 6.43 16 18 N -0.75 -34.25 5.13 -343.43 -1.76 -36.01 16 19 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 20 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -63.22 13.97 21.65 0.30 -62.92 16 23 Si 0.95 44.73 27.74 68.60 1.90 46.63 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 27 C -0.11 -1.91 9.75 30.62 0.30 -1.61 16 28 C -0.14 -2.43 9.89 30.62 0.30 -2.13 16 29 O 0.09 2.09 10.97 71.65 0.79 2.87 16 30 N -0.39 -9.31 12.07 -49.56 -0.60 -9.91 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.41 8.77 8.40 -92.71 -0.78 7.99 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.05 1.59 7.18 -2.39 -0.02 1.58 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.03 0.93 7.30 -2.39 -0.02 0.92 16 46 H 0.37 15.73 4.71 -92.71 -0.44 15.29 16 47 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.12 2.05 7.84 -2.39 -0.02 2.03 16 49 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.13 1.96 8.00 -2.39 -0.02 1.94 16 51 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -73.19 412.02 3.47 -69.72 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.33 Total: 34.91 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.11 Total: -10.68 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -3.95 Total: -126.65 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.74 Total: -13.93 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -73.19 3.47 -69.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds