Wall clock time and date at job start Wed Apr 1 2020 04:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.41371 * 126.80242 * 2 1 4 4 C 1.35455 * 103.98639 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.77507 * 179.97438 * 4 3 2 6 6 C 1.50694 * 115.55355 * 330.25985 * 5 4 3 7 7 O 1.21281 * 119.99996 * 99.21190 * 6 5 4 8 8 N 1.34778 * 120.00129 * 279.21163 * 6 5 4 9 9 C 1.46497 * 120.00068 * 174.87482 * 8 6 5 10 10 H 1.09004 * 109.47371 * 34.99976 * 9 8 6 11 11 C 1.53000 * 109.46968 * 274.99676 * 9 8 6 12 12 C 1.52997 * 109.47255 * 299.99980 * 11 9 8 13 13 C 1.53006 * 109.47284 * 300.00214 * 12 11 9 14 14 C 1.53000 * 109.47149 * 59.99721 * 13 12 11 15 15 C 1.53005 * 109.47147 * 300.00097 * 14 13 12 16 16 H 1.08994 * 109.46886 * 300.00440 * 15 14 13 17 17 C 1.53000 * 109.47147 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.46919 * 64.99806 * 17 15 14 19 19 C 1.36933 * 119.99792 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46893 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47552 * 119.99781 * 23 21 19 26 26 H 1.48503 * 109.46718 * 239.99992 * 23 21 19 27 27 C 1.53001 * 117.51672 * 115.96697 * 5 4 3 28 28 C 1.52996 * 60.00128 * 107.47518 * 27 5 4 29 29 O 1.34037 * 106.44459 * 0.23933 * 4 3 2 30 30 N 1.20925 * 111.56899 * 359.56908 * 29 4 3 31 31 H 1.09003 * 109.46891 * 90.00431 * 1 2 3 32 32 H 1.08998 * 109.46910 * 209.99865 * 1 2 3 33 33 H 1.08998 * 109.46984 * 330.00393 * 1 2 3 34 34 H 1.08001 * 128.01067 * 0.03225 * 3 2 1 35 35 H 0.97005 * 119.99970 * 354.86915 * 8 6 5 36 36 H 1.09005 * 109.47186 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47324 * 60.00376 * 11 9 8 38 38 H 1.09004 * 109.47100 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.46969 * 59.99627 * 12 11 9 40 40 H 1.08996 * 109.47117 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.46638 * 299.99616 * 13 12 11 42 42 H 1.09001 * 109.46749 * 60.00095 * 14 13 12 43 43 H 1.08994 * 109.46796 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.47155 * 184.99898 * 17 15 14 45 45 H 1.08998 * 109.46990 * 305.00424 * 17 15 14 46 46 H 0.96996 * 119.99756 * 0.02562 * 18 17 15 47 47 H 0.97000 * 119.99700 * 180.02562 * 22 21 19 48 48 H 1.09003 * 117.49847 * 214.96693 * 27 5 4 49 49 H 1.08995 * 117.49808 * 359.97438 * 27 5 4 50 50 H 1.09003 * 117.49923 * 252.50536 * 28 27 5 51 51 H 1.09009 * 117.49760 * 107.48751 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6026 0.6067 -0.0006 5 6 4.9022 1.3695 -0.0014 6 6 4.8649 2.7165 -0.6760 7 8 4.7528 3.7247 -0.0113 8 7 4.9562 2.8008 -2.0180 9 6 4.8075 4.0981 -2.6822 10 1 5.2363 4.8791 -2.0543 11 6 3.3225 4.3861 -2.9119 12 6 2.7207 3.2899 -3.7934 13 6 3.4486 3.2603 -5.1389 14 6 4.9336 2.9723 -4.9092 15 6 5.5354 4.0686 -4.0277 16 1 5.4247 5.0337 -4.5219 17 6 7.0205 3.7809 -3.7986 18 7 7.7376 3.8708 -5.0729 19 6 9.0886 3.6511 -5.1153 20 1 9.6253 3.4111 -4.2093 21 6 9.7682 3.7368 -6.3226 22 7 9.1140 4.0288 -7.4268 23 14 11.6109 3.4364 -6.3806 24 1 12.1053 3.1275 -5.0148 25 1 11.8978 2.2916 -7.2819 26 1 12.2947 4.6518 -6.8909 27 6 5.8132 1.2150 1.2181 28 6 6.1961 0.5602 -0.1106 29 8 3.4538 -0.7254 -0.0063 30 7 2.2869 -1.0424 -0.0006 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0711 2.1743 0.0005 35 1 5.1205 2.0026 -2.5441 36 1 3.2119 5.3512 -3.4066 37 1 2.8040 4.4072 -1.9535 38 1 1.6627 3.4949 -3.9566 39 1 2.8315 2.3247 -3.2992 40 1 3.0196 2.4797 -5.7670 41 1 3.3379 4.2256 -5.6331 42 1 5.0442 2.0071 -4.4150 43 1 5.4521 2.9517 -5.8677 44 1 7.4285 4.5111 -3.0998 45 1 7.1370 2.7787 -3.3861 46 1 7.2556 4.0867 -5.8865 47 1 9.5888 4.0883 -8.2705 48 1 6.3856 2.0878 1.5325 49 1 5.4724 0.5620 2.0214 50 1 6.1073 -0.5239 -0.1815 51 1 7.0204 1.0022 -0.6704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268774376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:06 Heat of formation + Delta-G solvation = 45.737315 kcal Electronic energy + Delta-G solvation = -31879.021012 eV Core-core repulsion = 27782.157551 eV Total energy + Delta-G solvation = -4096.863461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.18933 -40.63487 -38.77453 -36.80065 -35.04445 -34.69110 -33.66986 -31.96288 -31.75782 -29.98754 -29.49041 -28.97240 -25.58186 -24.90911 -23.55538 -23.03783 -22.80517 -22.24282 -21.54619 -20.66491 -19.70729 -18.98509 -18.24797 -17.82023 -17.18606 -16.83139 -15.91843 -15.61652 -15.22389 -14.94741 -14.67280 -14.54061 -14.07722 -13.79796 -13.69845 -13.62353 -13.53422 -13.30241 -13.29286 -13.10257 -12.84375 -12.68676 -12.15483 -12.06692 -11.91511 -11.77999 -11.62226 -11.45935 -11.36702 -11.11190 -10.92729 -10.91232 -10.76513 -10.39363 -10.26046 -10.21120 -10.00781 -9.96006 -9.89703 -9.65957 -9.42140 -9.00006 -8.87796 -6.94062 -5.79150 -3.07462 1.12180 1.94695 2.12830 2.76700 3.15523 3.39237 3.41584 3.47587 3.49531 3.90514 3.94808 4.35169 4.44572 4.52793 4.56620 4.75906 4.81610 4.85809 4.89244 4.94729 5.14828 5.20021 5.21961 5.26495 5.29117 5.32747 5.46007 5.47638 5.54036 5.56792 5.59240 5.60621 5.63760 5.70386 5.76607 5.78394 5.83040 6.00276 6.07887 6.11589 6.20295 6.23060 6.33419 6.44672 6.50217 6.64651 6.76688 6.83196 7.44193 7.68329 7.99321 8.09338 8.39892 9.51377 10.08830 10.43459 11.43750 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.002936 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.175414 B = 9533.265744 C =10477.517506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.216 4.216 4 C 0.018 3.982 5 C -0.096 4.096 6 C 0.562 3.438 7 O -0.528 6.528 8 N -0.703 5.703 9 C 0.153 3.847 10 H 0.091 0.909 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.087 0.913 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.125 4.125 28 C -0.150 4.150 29 O 0.103 5.897 30 N -0.364 5.364 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.170 0.830 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.116 0.884 49 H 0.108 0.892 50 H 0.114 0.886 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.121 -6.089 14.609 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C -0.238 4.238 4 C -0.046 4.046 5 C -0.100 4.100 6 C 0.345 3.655 7 O -0.404 6.404 8 N -0.354 5.354 9 C 0.049 3.951 10 H 0.109 0.891 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.121 4.121 16 H 0.105 0.895 17 C 0.033 3.967 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.163 4.163 28 C -0.187 4.187 29 O 0.036 5.964 30 N -0.069 5.069 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.133 0.867 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.274 -6.711 15.120 23.917 hybrid contribution 0.818 0.368 -0.706 1.141 sum -16.456 -6.343 14.414 22.777 Atomic orbital electron populations 1.20178 0.85813 1.03793 1.03529 1.23574 0.99081 0.88627 1.02639 1.22341 0.90823 1.01228 1.09392 1.22744 0.95366 0.83585 1.02896 1.19401 0.87757 0.95067 1.07799 1.18812 0.76410 0.87843 0.82417 1.90718 1.49113 1.36243 1.64339 1.46065 1.71632 1.11773 1.05962 1.21039 0.95268 0.85035 0.93776 0.89116 1.21903 0.95424 0.99362 0.99903 1.21489 0.98870 0.98896 0.96054 1.21582 0.95854 1.01804 0.96582 1.21534 0.94587 0.97598 1.01103 1.21632 0.96086 1.00584 0.93767 0.89519 1.20636 0.88479 0.97555 0.90064 1.42368 1.05769 1.85075 1.04304 1.19251 0.84330 1.39631 0.93668 0.91252 1.24727 0.97982 1.02702 0.95569 1.69664 1.34697 1.55610 0.98214 0.86136 0.85520 0.77375 0.77288 1.20574 1.21887 1.21889 1.23156 0.98664 1.03499 0.90962 1.23317 0.94621 1.00357 1.00406 1.84804 1.21765 1.22019 1.67762 1.73866 0.89106 1.23786 1.20129 0.90022 0.90527 0.89943 0.81218 0.75987 0.90805 0.91941 0.92472 0.92385 0.92280 0.91843 0.92748 0.90181 0.96430 0.96467 0.78209 0.93582 0.86620 0.87348 0.86719 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.48 36.01 0.38 -0.15 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 C -0.22 -2.30 10.59 -39.38 -0.42 -2.71 16 4 C 0.02 0.19 6.77 -35.30 -0.24 -0.04 16 5 C -0.10 -1.00 2.40 -156.82 -0.38 -1.38 16 6 C 0.56 7.05 6.56 -10.99 -0.07 6.98 16 7 O -0.53 -8.21 16.64 5.56 0.09 -8.12 16 8 N -0.70 -8.38 3.61 -53.80 -0.19 -8.58 16 9 C 0.15 1.96 2.27 -67.93 -0.15 1.80 16 10 H 0.09 1.30 7.51 -51.93 -0.39 0.91 16 11 C -0.13 -1.42 5.60 -26.73 -0.15 -1.57 16 12 C -0.12 -1.21 5.77 -26.73 -0.15 -1.36 16 13 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 14 C -0.11 -1.53 4.91 -26.73 -0.13 -1.67 16 15 C -0.10 -1.49 2.02 -90.61 -0.18 -1.67 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.16 3.03 5.42 -4.04 -0.02 3.01 16 18 N -0.73 -17.67 5.33 -59.91 -0.32 -17.98 16 19 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C -0.13 -1.12 9.87 -26.73 -0.26 -1.38 16 28 C -0.15 -1.31 9.88 -26.73 -0.26 -1.58 16 29 O 0.10 1.20 10.97 17.18 0.19 1.39 16 30 N -0.36 -4.45 12.07 33.42 0.40 -4.05 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.40 4.59 6.67 -40.82 -0.27 4.32 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 43 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.33 7.61 -51.93 -0.40 -0.07 16 46 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.11 0.88 8.00 -51.93 -0.42 0.47 16 51 H 0.12 1.05 8.14 -51.92 -0.42 0.62 16 LS Contribution 411.79 15.07 6.21 6.21 Total: -1.00 -31.94 411.79 -9.30 -41.24 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.32 Total: 10.52 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -3.05 Total: -10.80 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.61 Total: -57.56 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.28 Total: -6.73 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.94 -9.30 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.981 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds