Wall clock time and date at job start Wed Apr 1 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.41371 * 126.80242 * 2 1 4 4 C 1.35455 * 103.98639 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.77507 * 179.97438 * 4 3 2 6 6 C 1.50694 * 115.55355 * 330.25985 * 5 4 3 7 7 O 1.21281 * 119.99996 * 99.21190 * 6 5 4 8 8 N 1.34778 * 120.00129 * 279.21163 * 6 5 4 9 9 C 1.46497 * 120.00068 * 174.87482 * 8 6 5 10 10 H 1.09004 * 109.47371 * 34.99976 * 9 8 6 11 11 C 1.53000 * 109.46968 * 274.99676 * 9 8 6 12 12 C 1.52997 * 109.47255 * 299.99980 * 11 9 8 13 13 C 1.53006 * 109.47284 * 300.00214 * 12 11 9 14 14 C 1.53000 * 109.47149 * 59.99721 * 13 12 11 15 15 C 1.53005 * 109.47147 * 300.00097 * 14 13 12 16 16 H 1.08994 * 109.46886 * 300.00440 * 15 14 13 17 17 C 1.53000 * 109.47147 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.46919 * 64.99806 * 17 15 14 19 19 C 1.36933 * 119.99792 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46893 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47552 * 119.99781 * 23 21 19 26 26 H 1.48503 * 109.46718 * 239.99992 * 23 21 19 27 27 C 1.53001 * 117.51672 * 115.96697 * 5 4 3 28 28 C 1.52996 * 60.00128 * 107.47518 * 27 5 4 29 29 O 1.34037 * 106.44459 * 0.23933 * 4 3 2 30 30 N 1.20925 * 111.56899 * 359.56908 * 29 4 3 31 31 H 1.09003 * 109.46891 * 90.00431 * 1 2 3 32 32 H 1.08998 * 109.46910 * 209.99865 * 1 2 3 33 33 H 1.08998 * 109.46984 * 330.00393 * 1 2 3 34 34 H 1.08001 * 128.01067 * 0.03225 * 3 2 1 35 35 H 0.97005 * 119.99970 * 354.86915 * 8 6 5 36 36 H 1.09005 * 109.47186 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47324 * 60.00376 * 11 9 8 38 38 H 1.09004 * 109.47100 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.46969 * 59.99627 * 12 11 9 40 40 H 1.08996 * 109.47117 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.46638 * 299.99616 * 13 12 11 42 42 H 1.09001 * 109.46749 * 60.00095 * 14 13 12 43 43 H 1.08994 * 109.46796 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.47155 * 184.99898 * 17 15 14 45 45 H 1.08998 * 109.46990 * 305.00424 * 17 15 14 46 46 H 0.96996 * 119.99756 * 0.02562 * 18 17 15 47 47 H 0.97000 * 119.99700 * 180.02562 * 22 21 19 48 48 H 1.09003 * 117.49847 * 214.96693 * 27 5 4 49 49 H 1.08995 * 117.49808 * 359.97438 * 27 5 4 50 50 H 1.09003 * 117.49923 * 252.50536 * 28 27 5 51 51 H 1.09009 * 117.49760 * 107.48751 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6026 0.6067 -0.0006 5 6 4.9022 1.3695 -0.0014 6 6 4.8649 2.7165 -0.6760 7 8 4.7528 3.7247 -0.0113 8 7 4.9562 2.8008 -2.0180 9 6 4.8075 4.0981 -2.6822 10 1 5.2363 4.8791 -2.0543 11 6 3.3225 4.3861 -2.9119 12 6 2.7207 3.2899 -3.7934 13 6 3.4486 3.2603 -5.1389 14 6 4.9336 2.9723 -4.9092 15 6 5.5354 4.0686 -4.0277 16 1 5.4247 5.0337 -4.5219 17 6 7.0205 3.7809 -3.7986 18 7 7.7376 3.8708 -5.0729 19 6 9.0886 3.6511 -5.1153 20 1 9.6253 3.4111 -4.2093 21 6 9.7682 3.7368 -6.3226 22 7 9.1140 4.0288 -7.4268 23 14 11.6109 3.4364 -6.3806 24 1 12.1053 3.1275 -5.0148 25 1 11.8978 2.2916 -7.2819 26 1 12.2947 4.6518 -6.8909 27 6 5.8132 1.2150 1.2181 28 6 6.1961 0.5602 -0.1106 29 8 3.4538 -0.7254 -0.0063 30 7 2.2869 -1.0424 -0.0006 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0711 2.1743 0.0005 35 1 5.1205 2.0026 -2.5441 36 1 3.2119 5.3512 -3.4066 37 1 2.8040 4.4072 -1.9535 38 1 1.6627 3.4949 -3.9566 39 1 2.8315 2.3247 -3.2992 40 1 3.0196 2.4797 -5.7670 41 1 3.3379 4.2256 -5.6331 42 1 5.0442 2.0071 -4.4150 43 1 5.4521 2.9517 -5.8677 44 1 7.4285 4.5111 -3.0998 45 1 7.1370 2.7787 -3.3861 46 1 7.2556 4.0867 -5.8865 47 1 9.5888 4.0883 -8.2705 48 1 6.3856 2.0878 1.5325 49 1 5.4724 0.5620 2.0214 50 1 6.1073 -0.5239 -0.1815 51 1 7.0204 1.0022 -0.6704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268774376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:05 Heat of formation + Delta-G solvation = 27.877272 kcal Electronic energy + Delta-G solvation = -31879.795482 eV Core-core repulsion = 27782.157551 eV Total energy + Delta-G solvation = -4097.637931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.00758 -41.66480 -39.81656 -37.72945 -36.44999 -35.80011 -34.69688 -33.70817 -32.56637 -31.24918 -30.88863 -29.61389 -27.07214 -25.97868 -24.68652 -24.37366 -23.63195 -23.23402 -22.48599 -21.95651 -20.61866 -20.02861 -19.34712 -18.91572 -18.65528 -17.74862 -16.96266 -16.74065 -16.51318 -16.11501 -15.97203 -15.60511 -15.25510 -15.06430 -14.96870 -14.69856 -14.50920 -14.33340 -14.21371 -14.08029 -13.94195 -13.46490 -13.40972 -13.14784 -13.00525 -12.89402 -12.75114 -12.62181 -12.58520 -12.40919 -12.16084 -12.07611 -11.92852 -11.90989 -11.84317 -11.43834 -11.20464 -11.03879 -11.01326 -10.95646 -10.85910 -10.24964 -10.04398 -8.97567 -7.94510 -5.22317 0.30218 1.16871 1.19668 1.47674 1.48190 1.57935 1.82457 2.27640 2.56124 2.59101 3.16975 3.20884 3.39379 3.48048 3.61079 3.68503 3.77739 3.79249 3.84209 4.02165 4.08042 4.21611 4.22835 4.42496 4.45025 4.47499 4.51137 4.56829 4.58507 4.63694 4.66302 4.67558 4.73817 4.81153 4.85255 4.89972 4.91778 5.01997 5.06934 5.07312 5.16248 5.20747 5.25680 5.30885 5.32811 5.43481 5.48394 5.52508 5.58538 6.28040 6.43567 7.08933 7.18515 7.35162 8.10910 8.34660 9.29009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.002936 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.175414 B = 9533.265744 C =10477.517506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.223 4.223 4 C 0.018 3.982 5 C -0.106 4.106 6 C 0.566 3.434 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.161 3.839 10 H 0.075 0.925 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.088 4.088 16 H 0.080 0.920 17 C 0.161 3.839 18 N -0.740 5.740 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.295 1.295 27 C -0.119 4.119 28 C -0.140 4.140 29 O 0.094 5.906 30 N -0.389 5.389 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.408 0.592 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.007 0.993 45 H 0.025 0.975 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.128 0.872 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.225 -6.819 15.608 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.245 4.245 4 C -0.046 4.046 5 C -0.110 4.110 6 C 0.350 3.650 7 O -0.438 6.438 8 N -0.349 5.349 9 C 0.056 3.944 10 H 0.093 0.907 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.107 4.107 16 H 0.098 0.902 17 C 0.035 3.965 18 N -0.384 5.384 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.192 1.192 25 H -0.220 1.220 26 H -0.222 1.222 27 C -0.157 4.157 28 C -0.177 4.177 29 O 0.030 5.970 30 N -0.097 5.097 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.193 0.807 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.043 0.957 46 H 0.208 0.792 47 H 0.060 0.940 48 H 0.130 0.870 49 H 0.141 0.859 50 H 0.146 0.854 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.374 -7.457 16.151 25.575 hybrid contribution 1.144 0.618 -0.966 1.620 sum -17.230 -6.838 15.185 23.963 Atomic orbital electron populations 1.20347 0.83552 1.04915 1.04579 1.24105 1.00534 0.88014 1.01078 1.22495 0.90852 1.01584 1.09530 1.22807 0.95583 0.83524 1.02687 1.19278 0.88431 0.94257 1.09063 1.19063 0.75437 0.88271 0.82191 1.90703 1.50607 1.37578 1.64920 1.46025 1.71312 1.11531 1.06022 1.20880 0.96337 0.85098 0.92102 0.90695 1.21854 0.93676 1.00126 1.00300 1.21428 0.99657 0.98492 0.94868 1.21532 0.93908 1.02198 0.97579 1.21445 0.96110 0.97523 0.99185 1.21457 0.93515 1.00571 0.95182 0.90203 1.20753 0.90717 0.97392 0.87653 1.42544 1.05210 1.84843 1.05753 1.19614 0.85808 1.38211 0.93670 0.90979 1.25500 1.02129 1.03532 0.95417 1.69808 1.36143 1.57321 0.98541 0.85135 0.80622 0.76750 0.77640 1.19172 1.21991 1.22229 1.23258 0.97697 1.03562 0.91169 1.23386 0.93300 1.00911 1.00072 1.84778 1.21800 1.22203 1.68222 1.73862 0.89458 1.24702 1.21674 0.88884 0.90071 0.88178 0.80680 0.75512 0.90058 0.91771 0.90562 0.92410 0.91318 0.91748 0.92122 0.93307 0.97512 0.95748 0.79172 0.94048 0.86958 0.85860 0.85398 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.48 71.24 0.75 -0.15 16 2 C 0.02 0.41 7.33 43.58 0.32 0.73 16 3 C -0.22 -4.40 10.59 22.40 0.24 -4.16 16 4 C 0.02 0.37 6.77 25.04 0.17 0.54 16 5 C -0.11 -2.09 2.40 -53.68 -0.13 -2.22 16 6 C 0.57 13.73 6.56 87.65 0.58 14.31 16 7 O -0.56 -17.15 16.64 -3.03 -0.05 -17.20 16 8 N -0.70 -16.02 3.61 -442.53 -1.60 -17.62 16 9 C 0.16 3.99 2.27 44.99 0.10 4.09 16 10 H 0.07 2.14 7.51 -2.38 -0.02 2.13 16 11 C -0.12 -2.48 5.60 30.59 0.17 -2.30 16 12 C -0.11 -1.96 5.77 30.60 0.18 -1.79 16 13 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 14 C -0.10 -2.86 4.91 30.60 0.15 -2.71 16 15 C -0.09 -2.57 2.02 -10.79 -0.02 -2.59 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C 0.16 6.14 5.42 86.38 0.47 6.60 16 18 N -0.74 -36.34 5.33 -343.45 -1.83 -38.17 16 19 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C -0.12 -1.97 9.87 30.59 0.30 -1.67 16 28 C -0.14 -2.25 9.88 30.59 0.30 -1.95 16 29 O 0.09 2.09 10.97 71.66 0.79 2.87 16 30 N -0.39 -9.07 12.07 -49.55 -0.60 -9.67 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.41 8.82 6.67 -92.70 -0.62 8.20 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.56 6.51 -2.39 -0.02 1.54 16 43 H 0.05 1.66 7.18 -2.39 -0.02 1.64 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 46 H 0.38 19.54 6.85 -92.71 -0.64 18.90 16 47 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.13 1.74 8.00 -2.39 -0.02 1.72 16 51 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -68.54 411.79 3.77 -64.77 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.31 Total: 36.92 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.06 Total: -11.64 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -3.75 Total: -123.46 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.74 Total: -14.33 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -68.54 3.77 -64.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268774376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.647 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds