Wall clock time and date at job start Wed Apr 1 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30174 * 126.80174 * 2 1 4 4 O 1.20916 * 111.60336 * 180.25116 * 3 2 1 5 5 C 1.34032 * 111.56844 * 359.74326 * 4 3 2 6 6 C 1.50706 * 126.77671 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44664 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00522 * 179.97438 * 7 5 4 9 9 N 1.46897 * 109.46900 * 90.00249 * 8 7 5 10 10 C 1.48051 * 111.00390 * 52.97512 * 9 8 7 11 11 C 1.54260 * 106.83464 * 146.61272 * 10 9 8 12 12 C 1.54363 * 104.82662 * 358.54486 * 11 10 9 13 13 H 1.09003 * 110.88641 * 95.06018 * 12 11 10 14 14 C 1.48926 * 110.99953 * 169.99893 * 9 8 7 15 15 H 1.09003 * 112.07765 * 78.17708 * 14 9 8 16 16 C 1.53107 * 107.98786 * 314.48271 * 14 9 8 17 17 C 1.52915 * 109.19447 * 184.13197 * 16 14 9 18 18 C 1.50310 * 109.41623 * 52.12683 * 17 16 14 19 19 O 1.21286 * 118.67323 * 159.16859 * 18 17 16 20 20 N 1.33326 * 122.64837 * 339.18385 * 18 17 16 21 21 C 1.46493 * 117.36507 * 180.28593 * 20 18 17 22 22 C 1.52996 * 109.47091 * 90.00451 * 21 20 18 23 23 C 1.50708 * 109.47250 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99723 * 359.97438 * 23 22 21 25 25 C 1.37873 * 120.00152 * 180.02562 * 23 22 21 26 26 N 1.31511 * 119.99965 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00200 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47229 * 89.99603 * 27 25 23 29 29 H 1.48498 * 109.47225 * 209.99946 * 27 25 23 30 30 H 1.48502 * 109.47000 * 329.99945 * 27 25 23 31 31 H 1.08996 * 109.47397 * 270.16628 * 1 2 3 32 32 H 1.09000 * 109.46876 * 30.17401 * 1 2 3 33 33 H 1.09001 * 109.46993 * 150.16318 * 1 2 3 34 34 H 1.09002 * 109.46970 * 269.99832 * 6 5 4 35 35 H 1.08991 * 109.47162 * 30.00293 * 6 5 4 36 36 H 1.09005 * 109.46817 * 150.00069 * 6 5 4 37 37 H 1.09000 * 109.46646 * 209.99357 * 8 7 5 38 38 H 1.09000 * 109.47248 * 330.00075 * 8 7 5 39 39 H 1.09004 * 109.98686 * 265.95475 * 10 9 8 40 40 H 1.09000 * 109.99034 * 27.26494 * 10 9 8 41 41 H 1.09007 * 110.36503 * 239.71181 * 11 10 9 42 42 H 1.08996 * 110.46228 * 117.43446 * 11 10 9 43 43 H 1.09001 * 109.51559 * 304.04939 * 16 14 9 44 44 H 1.09003 * 109.51883 * 64.15394 * 16 14 9 45 45 H 1.09002 * 109.48174 * 172.10891 * 17 16 14 46 46 H 1.08997 * 109.47978 * 292.13416 * 17 16 14 47 47 H 1.08998 * 109.47392 * 210.00747 * 21 20 18 48 48 H 1.09007 * 109.47261 * 330.00179 * 21 20 18 49 49 H 1.09005 * 109.47028 * 299.99751 * 22 21 20 50 50 H 1.08998 * 109.47196 * 60.00350 * 22 21 20 51 51 H 0.96999 * 120.00187 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6067 -0.0034 6 6 4.9022 -1.3695 -0.0076 7 6 2.3539 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0063 9 7 1.8369 -3.0572 1.3925 10 6 0.9346 -2.1805 2.1730 11 6 0.2076 -3.0818 3.1922 12 6 0.7309 -4.5052 2.9046 13 1 1.5644 -4.7531 3.5619 14 6 1.2193 -4.4114 1.4437 15 1 1.9318 -5.1965 1.1907 16 6 0.0091 -4.4149 0.5058 17 6 -0.7076 -5.7612 0.6149 18 6 -0.9947 -6.0588 2.0600 19 8 -1.8671 -6.8578 2.3275 20 7 -0.3291 -5.4797 3.0596 21 6 -0.6998 -5.8599 4.4249 22 6 0.1449 -7.0561 4.8683 23 6 -0.2369 -7.4477 6.2726 24 1 -1.0049 -6.8981 6.7966 25 6 0.3950 -8.5069 6.8888 26 7 1.3305 -9.1758 6.2510 27 14 -0.0777 -8.9919 8.6297 28 1 -1.1729 -9.9937 8.5844 29 1 1.1008 -9.5776 9.3177 30 1 -0.5368 -7.7899 9.3711 31 1 -0.3634 0.0030 1.0276 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5113 34 1 5.2112 -1.5551 -1.0363 35 1 5.6681 -0.7850 0.5020 36 1 4.7673 -2.3201 0.5084 37 1 1.0027 -2.7044 -0.5030 38 1 2.7205 -3.1709 -0.5101 39 1 1.5145 -1.4197 2.6956 40 1 0.2099 -1.7073 1.5106 41 1 -0.8705 -3.0356 3.0382 42 1 0.4577 -2.7842 4.2105 43 1 -0.6741 -3.6145 0.7899 44 1 0.3431 -4.2612 -0.5203 45 1 -1.6444 -5.7204 0.0592 46 1 -0.0734 -6.5452 0.2012 47 1 -0.5219 -5.0204 5.0969 48 1 -1.7555 -6.1302 4.4529 49 1 -0.0332 -7.8956 4.1963 50 1 1.2004 -6.7857 4.8404 51 1 1.7753 -9.9208 6.6846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272826680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:29 Heat of formation + Delta-G solvation = 34.340591 kcal Electronic energy + Delta-G solvation = -31962.855005 eV Core-core repulsion = 27865.497345 eV Total energy + Delta-G solvation = -4097.357660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.18431 -41.08170 -38.72393 -36.02106 -34.91937 -33.96914 -33.38004 -32.87033 -31.32875 -29.40348 -29.03069 -28.47292 -27.77813 -25.99647 -25.13580 -23.81242 -22.42708 -21.71456 -21.18450 -20.47184 -19.77500 -18.05481 -17.92933 -17.29232 -16.89364 -16.40716 -16.10924 -15.83818 -15.18002 -14.86782 -14.74567 -14.54837 -14.33217 -13.98784 -13.82339 -13.71758 -13.40777 -13.27533 -13.11992 -12.99332 -12.78623 -12.69351 -12.50874 -12.30321 -12.09751 -11.91037 -11.84705 -11.67586 -11.46506 -11.21786 -11.11591 -11.02764 -10.90949 -10.69118 -10.62517 -10.17309 -9.85568 -9.83882 -9.46151 -9.34000 -9.02924 -8.58592 -8.33862 -8.05890 -5.99440 -4.02036 1.19882 1.88013 2.84736 3.07114 3.33296 3.33689 3.39819 3.43247 3.85031 3.87804 4.15824 4.30671 4.38064 4.46751 4.47720 4.64740 4.68976 4.78101 4.91887 4.96176 5.02282 5.07698 5.10736 5.12054 5.14727 5.18331 5.29331 5.34135 5.36975 5.42292 5.43855 5.51321 5.62907 5.64155 5.67381 5.74379 5.76263 5.86265 5.89118 6.03067 6.09969 6.19502 6.53021 6.56482 6.66299 6.87189 6.91696 7.64382 7.75324 8.01121 8.02894 8.05493 8.38417 8.66094 9.04434 9.61596 11.12103 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002560 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.571435 B =10936.649413 C =11573.734836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.026 3.974 3 N -0.368 5.368 4 O 0.093 5.907 5 C -0.010 4.010 6 C -0.076 4.076 7 C -0.200 4.200 8 C 0.117 3.883 9 N -0.501 5.501 10 C 0.035 3.965 11 C -0.144 4.144 12 C 0.151 3.849 13 H 0.101 0.899 14 C 0.059 3.941 15 H 0.111 0.889 16 C -0.151 4.151 17 C -0.131 4.131 18 C 0.510 3.490 19 O -0.547 6.547 20 N -0.590 5.590 21 C 0.109 3.891 22 C 0.016 3.984 23 C -0.519 4.519 24 H 0.056 0.944 25 C 0.059 3.941 26 N -0.894 5.894 27 Si 0.893 3.107 28 H -0.280 1.280 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.015 0.985 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 18.326 -17.494 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.074 4.074 6 C -0.133 4.133 7 C -0.204 4.204 8 C -0.010 4.010 9 N -0.225 5.225 10 C -0.093 4.093 11 C -0.183 4.183 12 C 0.045 3.955 13 H 0.119 0.881 14 C -0.049 4.049 15 H 0.129 0.871 16 C -0.190 4.190 17 C -0.172 4.172 18 C 0.297 3.703 19 O -0.425 6.425 20 N -0.321 5.321 21 C -0.012 4.012 22 C -0.022 4.022 23 C -0.558 4.558 24 H 0.074 0.926 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.721 3.279 28 H -0.206 1.206 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.039 0.961 50 H 0.033 0.967 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.456 19.112 -17.136 26.053 hybrid contribution -0.964 -0.992 0.622 1.516 sum 3.492 18.120 -16.514 24.764 Atomic orbital electron populations 1.20280 0.86308 1.03645 1.03496 1.23401 0.98702 0.88633 1.02635 1.73849 0.89289 1.23906 1.20448 1.84800 1.21611 1.22722 1.67899 1.24315 0.98378 0.83497 1.01221 1.20402 0.89787 0.99261 1.03899 1.20758 0.91727 0.96895 1.11046 1.20581 1.01359 0.88318 0.90783 1.65131 1.45428 1.01548 1.10374 1.23034 0.94576 0.96020 0.95630 1.22913 1.00376 0.94852 1.00207 1.21352 0.90419 0.87673 0.96016 0.88116 1.23121 0.94722 0.92363 0.94744 0.87102 1.22251 0.97925 0.98029 1.00798 1.21571 1.02828 0.98246 0.94522 1.19944 0.81768 0.81103 0.87470 1.90742 1.32657 1.34525 1.84560 1.47196 1.35260 1.41212 1.08395 1.21926 1.01367 0.99134 0.78760 1.19330 0.94493 0.92130 0.96226 1.21091 1.20697 1.14898 0.99090 0.92610 1.24986 0.95028 0.96247 0.98011 1.69968 1.25048 1.20880 1.37373 0.86575 0.77975 0.78783 0.84550 1.20626 1.21238 1.19850 0.89813 0.90461 0.90200 0.89585 0.89872 0.88119 0.92163 0.89068 0.90551 0.92856 0.90866 0.90171 0.91087 0.90324 0.88585 0.88408 0.92016 0.90650 0.96058 0.96683 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 8.78 36.01 0.32 -0.26 16 2 C 0.03 0.25 6.79 -82.10 -0.56 -0.31 16 3 N -0.37 -4.24 12.07 33.42 0.40 -3.84 16 4 O 0.09 0.99 11.20 17.20 0.19 1.18 16 5 C -0.01 -0.08 7.49 -35.30 -0.26 -0.35 16 6 C -0.08 -0.40 10.25 36.01 0.37 -0.03 16 7 C -0.20 -1.75 4.95 -104.42 -0.52 -2.26 16 8 C 0.12 0.89 4.74 -4.97 -0.02 0.87 16 9 N -0.50 -4.64 5.38 -223.75 -1.20 -5.85 16 10 C 0.04 0.34 4.70 -2.53 -0.01 0.33 16 11 C -0.14 -1.63 5.77 -25.36 -0.15 -1.78 16 12 C 0.15 2.03 3.16 -67.42 -0.21 1.82 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.06 0.61 3.46 -65.84 -0.23 0.38 16 15 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.15 -1.38 4.04 -26.72 -0.11 -1.49 16 17 C -0.13 -1.56 6.07 -28.12 -0.17 -1.73 16 18 C 0.51 8.96 7.47 -11.82 -0.09 8.88 16 19 O -0.55 -12.33 16.19 5.55 0.09 -12.24 16 20 N -0.59 -10.09 2.43 -166.30 -0.40 -10.49 16 21 C 0.11 2.29 5.03 -4.05 -0.02 2.27 16 22 C 0.02 0.42 5.28 -27.88 -0.15 0.27 16 23 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 24 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 25 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 26 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 27 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 31 H 0.08 0.57 7.08 -51.93 -0.37 0.21 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.47 7.64 -51.93 -0.40 0.07 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.53 8.05 -51.93 -0.42 0.12 16 37 H 0.06 0.42 5.08 -51.93 -0.26 0.15 16 38 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.45 4.03 -51.93 -0.21 0.24 16 41 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 44 H 0.08 0.54 6.31 -51.93 -0.33 0.22 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.06 1.19 7.81 -51.93 -0.41 0.79 16 48 H 0.08 1.72 7.14 -51.93 -0.37 1.35 16 49 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -34.75 395.33 -9.60 -44.34 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.13 Total: -2.65 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.22 Total: -6.90 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.47 Total: -46.54 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.28 Total: -11.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.75 -9.60 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272826680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.684 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds