Wall clock time and date at job start Wed Apr 1 2020 04:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30174 * 126.80174 * 2 1 4 4 O 1.20916 * 111.60336 * 180.25116 * 3 2 1 5 5 C 1.34032 * 111.56844 * 359.74326 * 4 3 2 6 6 C 1.50706 * 126.77671 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44664 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00522 * 179.97438 * 7 5 4 9 9 N 1.46897 * 109.46900 * 90.00249 * 8 7 5 10 10 C 1.48051 * 111.00390 * 52.97512 * 9 8 7 11 11 C 1.54260 * 106.83464 * 146.61272 * 10 9 8 12 12 C 1.54363 * 104.82662 * 358.54486 * 11 10 9 13 13 H 1.09003 * 110.88641 * 95.06018 * 12 11 10 14 14 C 1.48926 * 110.99953 * 169.99893 * 9 8 7 15 15 H 1.09003 * 112.07765 * 78.17708 * 14 9 8 16 16 C 1.53107 * 107.98786 * 314.48271 * 14 9 8 17 17 C 1.52915 * 109.19447 * 184.13197 * 16 14 9 18 18 C 1.50310 * 109.41623 * 52.12683 * 17 16 14 19 19 O 1.21286 * 118.67323 * 159.16859 * 18 17 16 20 20 N 1.33326 * 122.64837 * 339.18385 * 18 17 16 21 21 C 1.46493 * 117.36507 * 180.28593 * 20 18 17 22 22 C 1.52996 * 109.47091 * 90.00451 * 21 20 18 23 23 C 1.50708 * 109.47250 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99723 * 359.97438 * 23 22 21 25 25 C 1.37873 * 120.00152 * 180.02562 * 23 22 21 26 26 N 1.31511 * 119.99965 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00200 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47229 * 89.99603 * 27 25 23 29 29 H 1.48498 * 109.47225 * 209.99946 * 27 25 23 30 30 H 1.48502 * 109.47000 * 329.99945 * 27 25 23 31 31 H 1.08996 * 109.47397 * 270.16628 * 1 2 3 32 32 H 1.09000 * 109.46876 * 30.17401 * 1 2 3 33 33 H 1.09001 * 109.46993 * 150.16318 * 1 2 3 34 34 H 1.09002 * 109.46970 * 269.99832 * 6 5 4 35 35 H 1.08991 * 109.47162 * 30.00293 * 6 5 4 36 36 H 1.09005 * 109.46817 * 150.00069 * 6 5 4 37 37 H 1.09000 * 109.46646 * 209.99357 * 8 7 5 38 38 H 1.09000 * 109.47248 * 330.00075 * 8 7 5 39 39 H 1.09004 * 109.98686 * 265.95475 * 10 9 8 40 40 H 1.09000 * 109.99034 * 27.26494 * 10 9 8 41 41 H 1.09007 * 110.36503 * 239.71181 * 11 10 9 42 42 H 1.08996 * 110.46228 * 117.43446 * 11 10 9 43 43 H 1.09001 * 109.51559 * 304.04939 * 16 14 9 44 44 H 1.09003 * 109.51883 * 64.15394 * 16 14 9 45 45 H 1.09002 * 109.48174 * 172.10891 * 17 16 14 46 46 H 1.08997 * 109.47978 * 292.13416 * 17 16 14 47 47 H 1.08998 * 109.47392 * 210.00747 * 21 20 18 48 48 H 1.09007 * 109.47261 * 330.00179 * 21 20 18 49 49 H 1.09005 * 109.47028 * 299.99751 * 22 21 20 50 50 H 1.08998 * 109.47196 * 60.00350 * 22 21 20 51 51 H 0.96999 * 120.00187 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6067 -0.0034 6 6 4.9022 -1.3695 -0.0076 7 6 2.3539 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0063 9 7 1.8369 -3.0572 1.3925 10 6 0.9346 -2.1805 2.1730 11 6 0.2076 -3.0818 3.1922 12 6 0.7309 -4.5052 2.9046 13 1 1.5644 -4.7531 3.5619 14 6 1.2193 -4.4114 1.4437 15 1 1.9318 -5.1965 1.1907 16 6 0.0091 -4.4149 0.5058 17 6 -0.7076 -5.7612 0.6149 18 6 -0.9947 -6.0588 2.0600 19 8 -1.8671 -6.8578 2.3275 20 7 -0.3291 -5.4797 3.0596 21 6 -0.6998 -5.8599 4.4249 22 6 0.1449 -7.0561 4.8683 23 6 -0.2369 -7.4477 6.2726 24 1 -1.0049 -6.8981 6.7966 25 6 0.3950 -8.5069 6.8888 26 7 1.3305 -9.1758 6.2510 27 14 -0.0777 -8.9919 8.6297 28 1 -1.1729 -9.9937 8.5844 29 1 1.1008 -9.5776 9.3177 30 1 -0.5368 -7.7899 9.3711 31 1 -0.3634 0.0030 1.0276 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5113 34 1 5.2112 -1.5551 -1.0363 35 1 5.6681 -0.7850 0.5020 36 1 4.7673 -2.3201 0.5084 37 1 1.0027 -2.7044 -0.5030 38 1 2.7205 -3.1709 -0.5101 39 1 1.5145 -1.4197 2.6956 40 1 0.2099 -1.7073 1.5106 41 1 -0.8705 -3.0356 3.0382 42 1 0.4577 -2.7842 4.2105 43 1 -0.6741 -3.6145 0.7899 44 1 0.3431 -4.2612 -0.5203 45 1 -1.6444 -5.7204 0.0592 46 1 -0.0734 -6.5452 0.2012 47 1 -0.5219 -5.0204 5.0969 48 1 -1.7555 -6.1302 4.4529 49 1 -0.0332 -7.8956 4.1963 50 1 1.2004 -6.7857 4.8404 51 1 1.7753 -9.9208 6.6846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272826680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:28 Heat of formation + Delta-G solvation = 11.271109 kcal Electronic energy + Delta-G solvation = -31963.855373 eV Core-core repulsion = 27865.497345 eV Total energy + Delta-G solvation = -4098.358028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.86933 -42.17301 -39.90746 -37.14890 -36.14087 -35.04980 -34.49253 -34.20659 -32.47425 -30.98337 -29.76305 -29.24832 -28.52752 -26.94441 -26.70933 -25.00859 -23.50138 -22.92757 -22.48132 -21.28380 -20.57644 -19.22823 -18.68507 -18.58834 -18.10864 -17.73076 -17.33827 -16.94421 -16.60348 -16.14717 -15.75780 -15.64129 -15.27269 -14.97102 -14.77791 -14.54718 -14.44917 -14.24724 -14.13855 -13.82745 -13.75985 -13.60075 -13.44364 -13.39685 -13.31891 -12.98096 -12.85629 -12.76331 -12.70407 -12.56248 -12.45510 -12.37844 -11.94941 -11.88252 -11.79174 -11.68908 -11.61881 -11.39030 -10.84449 -10.59197 -10.54814 -10.09856 -9.60145 -9.28520 -8.22911 -6.34916 0.55470 1.21871 1.38372 1.40836 1.51395 1.69486 2.07251 2.26638 2.40918 3.02570 3.10510 3.25631 3.40183 3.52754 3.59751 3.66032 3.82346 3.93249 4.04037 4.11124 4.12944 4.22858 4.36243 4.42623 4.44055 4.45389 4.57569 4.63594 4.66964 4.68325 4.76143 4.77092 4.79174 4.83915 4.87003 4.90213 4.92581 4.93716 5.00404 5.04665 5.07783 5.20860 5.26061 5.31386 5.35240 5.48457 5.58840 5.76974 5.82014 5.99421 6.17723 6.64595 6.80149 7.26642 7.34328 7.36429 8.89296 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002560 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.571435 B =10936.649413 C =11573.734836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.023 3.977 3 N -0.403 5.403 4 O 0.075 5.925 5 C -0.009 4.009 6 C -0.075 4.075 7 C -0.209 4.209 8 C 0.119 3.881 9 N -0.504 5.504 10 C 0.045 3.955 11 C -0.137 4.137 12 C 0.140 3.860 13 H 0.077 0.923 14 C 0.067 3.933 15 H 0.114 0.886 16 C -0.141 4.141 17 C -0.119 4.119 18 C 0.497 3.503 19 O -0.607 6.607 20 N -0.587 5.587 21 C 0.126 3.874 22 C 0.030 3.970 23 C -0.544 4.544 24 H 0.062 0.938 25 C 0.001 3.999 26 N -0.931 5.931 27 Si 0.968 3.032 28 H -0.276 1.276 29 H -0.278 1.278 30 H -0.259 1.259 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.054 0.946 49 H -0.024 1.024 50 H -0.002 1.002 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 19.358 -18.671 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 N -0.113 5.113 4 O 0.014 5.986 5 C -0.074 4.074 6 C -0.132 4.132 7 C -0.213 4.213 8 C -0.008 4.008 9 N -0.228 5.228 10 C -0.083 4.083 11 C -0.177 4.177 12 C 0.035 3.965 13 H 0.096 0.904 14 C -0.041 4.041 15 H 0.132 0.868 16 C -0.180 4.180 17 C -0.160 4.160 18 C 0.288 3.712 19 O -0.489 6.489 20 N -0.316 5.316 21 C 0.003 3.997 22 C -0.008 4.008 23 C -0.582 4.582 24 H 0.080 0.920 25 C -0.197 4.197 26 N -0.571 5.571 27 Si 0.792 3.208 28 H -0.202 1.202 29 H -0.204 1.204 30 H -0.183 1.183 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.072 0.928 49 H -0.006 1.006 50 H 0.016 0.984 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.698 20.190 -18.336 27.675 hybrid contribution -0.967 -1.324 0.988 1.915 sum 3.731 18.866 -17.347 25.900 Atomic orbital electron populations 1.20406 0.84828 1.04719 1.04001 1.23865 0.99771 0.88601 1.01420 1.73845 0.89852 1.25217 1.22410 1.84762 1.21481 1.23850 1.68467 1.24939 0.99729 0.82936 0.99758 1.20552 0.88496 0.98863 1.05302 1.20910 0.91582 0.97240 1.11590 1.20693 1.02780 0.87667 0.89629 1.65122 1.45090 1.00770 1.11783 1.22936 0.94645 0.95350 0.95354 1.22828 1.00528 0.93590 1.00706 1.21551 0.88733 0.87734 0.98461 0.90445 1.23019 0.95457 0.93180 0.92442 0.86786 1.22257 0.96913 0.96281 1.02529 1.21579 1.04352 1.00338 0.89694 1.21135 0.80546 0.79717 0.89817 1.90709 1.35323 1.37113 1.85769 1.47205 1.35967 1.41695 1.06735 1.21415 0.98962 0.97627 0.81716 1.19107 0.94274 0.92562 0.94834 1.21542 1.20999 1.15494 1.00203 0.91986 1.25981 0.94769 0.96071 1.02849 1.70102 1.26126 1.21414 1.39473 0.85411 0.77828 0.78798 0.78791 1.20195 1.20361 1.18316 0.89454 0.90308 0.88287 0.87576 0.89228 0.87833 0.90567 0.87281 0.91359 0.91180 0.90810 0.90770 0.90560 0.86482 0.86960 0.87063 0.90296 0.92765 1.00588 0.98388 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 8.78 71.24 0.63 -0.35 16 2 C 0.02 0.39 6.79 43.58 0.30 0.69 16 3 N -0.40 -8.95 12.07 -49.57 -0.60 -9.55 16 4 O 0.07 1.52 11.20 71.72 0.80 2.33 16 5 C -0.01 -0.14 7.49 25.04 0.19 0.05 16 6 C -0.08 -0.61 10.25 71.24 0.73 0.12 16 7 C -0.21 -3.09 4.95 -19.74 -0.10 -3.19 16 8 C 0.12 1.34 4.74 85.56 0.41 1.74 16 9 N -0.50 -7.90 5.38 -861.82 -4.64 -12.54 16 10 C 0.05 0.76 4.70 86.51 0.41 1.17 16 11 C -0.14 -2.96 5.77 31.48 0.18 -2.77 16 12 C 0.14 3.70 3.16 46.22 0.15 3.85 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C 0.07 1.23 3.46 45.01 0.16 1.39 16 15 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.14 -2.03 4.04 30.60 0.12 -1.91 16 17 C -0.12 -2.55 6.07 29.70 0.18 -2.37 16 18 C 0.50 17.64 7.47 87.76 0.66 18.30 16 19 O -0.61 -28.45 16.19 -3.05 -0.05 -28.50 16 20 N -0.59 -20.47 2.43 -799.26 -1.94 -22.41 16 21 C 0.13 5.51 5.03 86.38 0.43 5.95 16 22 C 0.03 1.67 5.28 29.85 0.16 1.82 16 23 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 24 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 25 C 0.00 0.08 5.46 84.65 0.46 0.54 16 26 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 27 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 30 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 31 H 0.09 0.98 7.08 -2.39 -0.02 0.96 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.77 7.64 -2.39 -0.02 0.75 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.82 8.05 -2.38 -0.02 0.80 16 37 H 0.08 0.64 5.08 -2.39 -0.01 0.63 16 38 H 0.11 0.90 8.08 -2.39 -0.02 0.88 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 0.96 4.03 -2.39 -0.01 0.96 16 41 H 0.07 1.60 7.97 -2.38 -0.02 1.58 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.08 6.57 -2.39 -0.02 1.07 16 44 H 0.12 0.92 6.31 -2.39 -0.02 0.91 16 45 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 3.14 7.81 -2.39 -0.02 3.12 16 48 H 0.05 2.60 7.14 -2.38 -0.02 2.59 16 49 H -0.02 -1.55 8.14 -2.38 -0.02 -1.57 16 50 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 51 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.33 395.33 2.11 -78.22 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.93 Total: 9.58 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.28 Total: -6.69 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -6.89 Total: -102.16 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.75 Total: -26.17 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -80.33 2.11 -78.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272826680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.494 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds