Wall clock time and date at job start Wed Apr 1 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80301 * 2 1 4 4 O 1.20914 * 111.60698 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56880 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.78044 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44830 * 359.74510 * 5 4 3 8 8 C 1.50696 * 128.01428 * 180.23165 * 7 5 4 9 9 N 1.46900 * 109.47300 * 270.17055 * 8 7 5 10 10 C 1.48066 * 111.00041 * 297.23513 * 9 8 7 11 11 C 1.54983 * 104.81938 * 213.97674 * 10 9 8 12 12 C 1.55305 * 101.73684 * 36.66419 * 11 10 9 13 13 C 1.46654 * 110.99872 * 176.81239 * 9 8 7 14 14 C 1.53891 * 110.90936 * 2.15110 * 13 9 8 15 15 C 1.54649 * 101.58637 * 215.24224 * 14 13 9 16 16 N 1.46845 * 105.50436 * 24.77687 * 15 14 13 17 17 C 1.46500 * 124.36610 * 163.12492 * 16 15 14 18 18 C 1.52994 * 109.47497 * 89.99933 * 17 16 15 19 19 C 1.50699 * 109.47440 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00009 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99934 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46971 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47346 * 119.99378 * 23 21 19 26 26 H 1.48495 * 109.47305 * 240.00291 * 23 21 19 27 27 C 1.34653 * 111.26774 * 343.12498 * 16 15 14 28 28 O 1.21282 * 125.08019 * 180.85278 * 27 16 15 29 29 H 1.08991 * 109.47167 * 90.03114 * 1 2 3 30 30 H 1.09007 * 109.46902 * 210.02401 * 1 2 3 31 31 H 1.08996 * 109.46840 * 330.02101 * 1 2 3 32 32 H 1.09008 * 109.47092 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47259 * 119.97127 * 6 5 4 34 34 H 1.08997 * 109.47458 * 239.97612 * 6 5 4 35 35 H 1.09003 * 109.46875 * 30.16990 * 8 7 5 36 36 H 1.09000 * 109.47282 * 150.16669 * 8 7 5 37 37 H 1.08999 * 110.36909 * 332.81340 * 10 9 8 38 38 H 1.09001 * 110.36883 * 95.14080 * 10 9 8 39 39 H 1.08999 * 110.97494 * 278.54962 * 11 10 9 40 40 H 1.08999 * 111.00657 * 154.79093 * 11 10 9 41 41 H 1.09000 * 110.74954 * 206.63031 * 12 11 10 42 42 H 1.08999 * 110.74731 * 83.28518 * 12 11 10 43 43 H 1.09002 * 111.00293 * 333.31418 * 14 13 9 44 44 H 1.08992 * 111.00375 * 97.12716 * 14 13 9 45 45 H 1.08997 * 110.23504 * 143.78867 * 15 14 13 46 46 H 1.08997 * 110.23916 * 265.76678 * 15 14 13 47 47 H 1.09001 * 109.47018 * 210.00460 * 17 16 15 48 48 H 1.09007 * 109.47169 * 329.99591 * 17 16 15 49 49 H 1.08996 * 109.47108 * 300.00592 * 18 17 16 50 50 H 1.09010 * 109.46702 * 59.99691 * 18 17 16 51 51 H 0.97002 * 119.99672 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0004 6 6 4.9022 -1.3695 0.0014 7 6 2.3540 -1.1321 0.0055 8 6 1.9591 -2.5863 0.0123 9 7 1.8315 -3.0656 -1.3704 10 6 0.7557 -2.3421 -2.0856 11 6 0.1447 -3.3914 -3.0488 12 6 0.2173 -4.6856 -2.1932 13 6 1.5213 -4.4986 -1.4034 14 6 1.3695 -5.0606 0.0211 15 6 1.9595 -6.4809 -0.1408 16 7 2.8769 -6.3969 -1.2843 17 6 3.9139 -7.3865 -1.5871 18 6 3.3351 -8.4686 -2.5007 19 6 4.4019 -9.4862 -2.8126 20 1 5.3935 -9.3727 -2.4001 21 6 4.1121 -10.5621 -3.6246 22 7 2.9044 -10.7005 -4.1265 23 14 5.4343 -11.8238 -4.0107 24 1 6.6969 -11.4423 -3.3285 25 1 4.9976 -13.1604 -3.5333 26 1 5.6598 -11.8714 -5.4777 27 6 2.6421 -5.2930 -2.0187 28 8 3.2436 -4.9848 -3.0258 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 5.7358 -0.6670 0.0018 33 1 4.9549 -1.9964 0.8916 34 1 4.9562 -1.9967 -0.8884 35 1 2.7226 -3.1677 0.5293 36 1 1.0048 -2.7013 0.5263 37 1 0.0023 -1.9896 -1.3812 38 1 1.1702 -1.5061 -2.6490 39 1 0.7454 -3.4874 -3.9532 40 1 -0.8880 -3.1428 -3.2933 41 1 0.2753 -5.5675 -2.8311 42 1 -0.6366 -4.7510 -1.5188 43 1 1.9491 -4.4760 0.7356 44 1 0.3206 -5.1037 0.3144 45 1 2.5036 -6.7680 0.7590 46 1 1.1649 -7.1981 -0.3467 47 1 4.7487 -6.8963 -2.0880 48 1 4.2631 -7.8419 -0.6603 49 1 2.5003 -8.9587 -1.9997 50 1 2.9858 -8.0130 -3.4274 51 1 2.7004 -11.4577 -4.6975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272827020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:07 Heat of formation + Delta-G solvation = 42.461179 kcal Electronic energy + Delta-G solvation = -32075.680457 eV Core-core repulsion = 27978.674932 eV Total energy + Delta-G solvation = -4097.005525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.07833 -41.14790 -38.09100 -35.88208 -35.44039 -33.89577 -33.61235 -32.09684 -31.72011 -29.21194 -28.94843 -28.16675 -27.68040 -26.16867 -24.99394 -23.57180 -22.46809 -21.70386 -21.23413 -20.36476 -19.64211 -18.63885 -17.82986 -17.13291 -16.70939 -16.31340 -15.89990 -15.79399 -15.20459 -14.88856 -14.65187 -14.48479 -14.02402 -13.84888 -13.63433 -13.54251 -13.40497 -13.25791 -13.11255 -12.90165 -12.68891 -12.57193 -12.55508 -12.47941 -12.14218 -12.01144 -11.72167 -11.69925 -11.31158 -11.21918 -11.12001 -10.97327 -10.92123 -10.70329 -10.62015 -10.06368 -10.00156 -9.85926 -9.46417 -9.32533 -9.17136 -8.38852 -8.29599 -7.99223 -6.03560 -4.06799 1.29979 1.96385 2.92826 3.03206 3.29808 3.36655 3.39921 3.46586 3.89562 3.94743 4.23637 4.30282 4.39192 4.44609 4.55470 4.64985 4.66066 4.85338 4.93130 4.99865 5.04364 5.07689 5.13259 5.21260 5.22216 5.28962 5.32923 5.34969 5.43995 5.47710 5.52677 5.60340 5.64207 5.69771 5.72113 5.78591 5.80439 5.91520 5.95716 5.96912 6.05566 6.18303 6.46260 6.73894 6.79521 6.81300 7.06382 7.52694 7.66827 7.86034 7.96769 8.11415 8.33306 8.77091 9.00444 9.57429 11.07913 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.002576 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.883356 B =10868.634671 C =11532.685959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.005 4.005 6 C -0.077 4.077 7 C -0.200 4.200 8 C 0.129 3.871 9 N -0.498 5.498 10 C 0.046 3.954 11 C -0.129 4.129 12 C -0.119 4.119 13 C 0.071 3.929 14 C -0.162 4.162 15 C 0.107 3.893 16 N -0.615 5.615 17 C 0.131 3.869 18 C 0.011 3.989 19 C -0.521 4.521 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.535 3.465 28 O -0.513 6.513 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.016 0.984 50 H 0.020 0.980 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 19.146 13.010 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 N -0.078 5.078 4 O 0.029 5.971 5 C -0.069 4.069 6 C -0.134 4.134 7 C -0.204 4.204 8 C 0.001 3.999 9 N -0.222 5.222 10 C -0.081 4.081 11 C -0.167 4.167 12 C -0.158 4.158 13 C -0.023 4.023 14 C -0.200 4.200 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.011 3.989 18 C -0.026 4.026 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.319 3.681 28 O -0.387 6.387 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.510 20.553 12.101 24.723 hybrid contribution -0.254 -1.818 0.138 1.841 sum -6.764 18.735 12.239 23.378 Atomic orbital electron populations 1.20247 0.86330 1.03487 1.03396 1.23381 0.98668 0.88610 1.02647 1.73824 0.89322 1.23936 1.20687 1.84798 1.21595 1.22714 1.67964 1.24307 0.98415 0.83404 1.00798 1.20403 0.89619 0.98596 1.04766 1.20745 0.91765 0.96798 1.11134 1.20594 1.00677 0.88241 0.90376 1.63209 1.44713 1.00971 1.13258 1.23194 0.91732 0.97108 0.96053 1.22766 1.01056 0.93847 0.99059 1.22649 0.94616 0.99796 0.98723 1.21913 0.95581 0.88976 0.95789 1.23473 1.02894 0.97147 0.96531 1.21973 0.93555 0.96275 0.89959 1.48529 1.35169 1.23940 1.27241 1.21779 0.88504 0.88878 0.99779 1.19409 0.96573 0.92099 0.94563 1.21126 0.97180 1.07647 1.30027 0.92435 1.25000 0.95467 0.98068 0.95757 1.69981 1.19615 1.30250 1.33338 0.86507 0.81949 0.81175 0.78201 1.19646 1.21011 1.20949 1.19975 0.83380 0.81114 0.83604 1.90675 1.52231 1.71901 1.23897 0.89970 0.90253 0.90591 0.90059 0.89276 0.88198 0.88880 0.92871 0.93010 0.90430 0.89934 0.90549 0.89821 0.90347 0.88646 0.89300 0.90589 0.91097 0.91159 0.91717 0.96538 0.96132 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 8.78 36.01 0.32 -0.25 16 2 C 0.03 0.28 6.98 -82.10 -0.57 -0.29 16 3 N -0.37 -4.64 12.07 33.42 0.40 -4.23 16 4 O 0.09 1.11 11.20 17.18 0.19 1.30 16 5 C -0.01 -0.05 7.49 -35.30 -0.26 -0.32 16 6 C -0.08 -0.61 10.23 36.01 0.37 -0.25 16 7 C -0.20 -2.08 5.22 -104.42 -0.54 -2.63 16 8 C 0.13 1.22 3.77 -4.98 -0.02 1.20 16 9 N -0.50 -5.97 4.90 -218.85 -1.07 -7.04 16 10 C 0.05 0.49 5.51 -2.13 -0.01 0.48 16 11 C -0.13 -1.44 7.08 -24.46 -0.17 -1.61 16 12 C -0.12 -1.41 6.07 -25.20 -0.15 -1.56 16 13 C 0.07 0.91 0.99 -132.20 -0.13 0.78 16 14 C -0.16 -1.58 5.20 -25.40 -0.13 -1.71 16 15 C 0.11 1.33 7.36 -2.99 -0.02 1.31 16 16 N -0.61 -10.72 2.94 -172.50 -0.51 -11.23 16 17 C 0.13 2.70 5.88 -4.04 -0.02 2.68 16 18 C 0.01 0.30 5.30 -27.89 -0.15 0.15 16 19 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 23 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.53 9.72 6.86 -11.13 -0.08 9.64 16 28 O -0.51 -11.66 17.62 5.56 0.10 -11.56 16 29 H 0.08 0.55 7.44 -51.93 -0.39 0.17 16 30 H 0.08 0.46 7.48 -51.93 -0.39 0.07 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.85 6.32 -51.93 -0.33 0.52 16 36 H 0.05 0.42 6.88 -51.93 -0.36 0.06 16 37 H 0.05 0.44 5.19 -51.93 -0.27 0.17 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 42 H 0.08 0.72 7.45 -51.93 -0.39 0.33 16 43 H 0.10 0.79 4.80 -51.93 -0.25 0.54 16 44 H 0.09 0.66 7.44 -51.93 -0.39 0.27 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.54 7.94 -51.93 -0.41 1.13 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.60 8.14 -51.92 -0.42 0.17 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -35.09 402.66 -9.29 -44.38 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.19 Total: -2.39 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.00 Total: -5.73 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.44 Total: -48.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.29 Total: -10.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.09 -9.29 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272827020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.837 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds