Wall clock time and date at job start Wed Apr 1 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80301 * 2 1 4 4 O 1.20914 * 111.60698 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56880 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.78044 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44830 * 359.74510 * 5 4 3 8 8 C 1.50696 * 128.01428 * 180.23165 * 7 5 4 9 9 N 1.46900 * 109.47300 * 270.17055 * 8 7 5 10 10 C 1.48066 * 111.00041 * 297.23513 * 9 8 7 11 11 C 1.54983 * 104.81938 * 213.97674 * 10 9 8 12 12 C 1.55305 * 101.73684 * 36.66419 * 11 10 9 13 13 C 1.46654 * 110.99872 * 176.81239 * 9 8 7 14 14 C 1.53891 * 110.90936 * 2.15110 * 13 9 8 15 15 C 1.54649 * 101.58637 * 215.24224 * 14 13 9 16 16 N 1.46845 * 105.50436 * 24.77687 * 15 14 13 17 17 C 1.46500 * 124.36610 * 163.12492 * 16 15 14 18 18 C 1.52994 * 109.47497 * 89.99933 * 17 16 15 19 19 C 1.50699 * 109.47440 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00009 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99934 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46971 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47346 * 119.99378 * 23 21 19 26 26 H 1.48495 * 109.47305 * 240.00291 * 23 21 19 27 27 C 1.34653 * 111.26774 * 343.12498 * 16 15 14 28 28 O 1.21282 * 125.08019 * 180.85278 * 27 16 15 29 29 H 1.08991 * 109.47167 * 90.03114 * 1 2 3 30 30 H 1.09007 * 109.46902 * 210.02401 * 1 2 3 31 31 H 1.08996 * 109.46840 * 330.02101 * 1 2 3 32 32 H 1.09008 * 109.47092 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47259 * 119.97127 * 6 5 4 34 34 H 1.08997 * 109.47458 * 239.97612 * 6 5 4 35 35 H 1.09003 * 109.46875 * 30.16990 * 8 7 5 36 36 H 1.09000 * 109.47282 * 150.16669 * 8 7 5 37 37 H 1.08999 * 110.36909 * 332.81340 * 10 9 8 38 38 H 1.09001 * 110.36883 * 95.14080 * 10 9 8 39 39 H 1.08999 * 110.97494 * 278.54962 * 11 10 9 40 40 H 1.08999 * 111.00657 * 154.79093 * 11 10 9 41 41 H 1.09000 * 110.74954 * 206.63031 * 12 11 10 42 42 H 1.08999 * 110.74731 * 83.28518 * 12 11 10 43 43 H 1.09002 * 111.00293 * 333.31418 * 14 13 9 44 44 H 1.08992 * 111.00375 * 97.12716 * 14 13 9 45 45 H 1.08997 * 110.23504 * 143.78867 * 15 14 13 46 46 H 1.08997 * 110.23916 * 265.76678 * 15 14 13 47 47 H 1.09001 * 109.47018 * 210.00460 * 17 16 15 48 48 H 1.09007 * 109.47169 * 329.99591 * 17 16 15 49 49 H 1.08996 * 109.47108 * 300.00592 * 18 17 16 50 50 H 1.09010 * 109.46702 * 59.99691 * 18 17 16 51 51 H 0.97002 * 119.99672 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0004 6 6 4.9022 -1.3695 0.0014 7 6 2.3540 -1.1321 0.0055 8 6 1.9591 -2.5863 0.0123 9 7 1.8315 -3.0656 -1.3704 10 6 0.7557 -2.3421 -2.0856 11 6 0.1447 -3.3914 -3.0488 12 6 0.2173 -4.6856 -2.1932 13 6 1.5213 -4.4986 -1.4034 14 6 1.3695 -5.0606 0.0211 15 6 1.9595 -6.4809 -0.1408 16 7 2.8769 -6.3969 -1.2843 17 6 3.9139 -7.3865 -1.5871 18 6 3.3351 -8.4686 -2.5007 19 6 4.4019 -9.4862 -2.8126 20 1 5.3935 -9.3727 -2.4001 21 6 4.1121 -10.5621 -3.6246 22 7 2.9044 -10.7005 -4.1265 23 14 5.4343 -11.8238 -4.0107 24 1 6.6969 -11.4423 -3.3285 25 1 4.9976 -13.1604 -3.5333 26 1 5.6598 -11.8714 -5.4777 27 6 2.6421 -5.2930 -2.0187 28 8 3.2436 -4.9848 -3.0258 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 5.7358 -0.6670 0.0018 33 1 4.9549 -1.9964 0.8916 34 1 4.9562 -1.9967 -0.8884 35 1 2.7226 -3.1677 0.5293 36 1 1.0048 -2.7013 0.5263 37 1 0.0023 -1.9896 -1.3812 38 1 1.1702 -1.5061 -2.6490 39 1 0.7454 -3.4874 -3.9532 40 1 -0.8880 -3.1428 -3.2933 41 1 0.2753 -5.5675 -2.8311 42 1 -0.6366 -4.7510 -1.5188 43 1 1.9491 -4.4760 0.7356 44 1 0.3206 -5.1037 0.3144 45 1 2.5036 -6.7680 0.7590 46 1 1.1649 -7.1981 -0.3467 47 1 4.7487 -6.8963 -2.0880 48 1 4.2631 -7.8419 -0.6603 49 1 2.5003 -8.9587 -1.9997 50 1 2.9858 -8.0130 -3.4274 51 1 2.7004 -11.4577 -4.6975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272827020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:06 Heat of formation + Delta-G solvation = 18.706874 kcal Electronic energy + Delta-G solvation = -32076.710521 eV Core-core repulsion = 27978.674932 eV Total energy + Delta-G solvation = -4098.035589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.87190 -42.23356 -39.26308 -37.32775 -36.28833 -35.50051 -34.63826 -33.51624 -32.75641 -30.74271 -29.67994 -28.96767 -28.65861 -27.19143 -26.63004 -24.63943 -23.71250 -22.96041 -22.27358 -21.29290 -20.63995 -19.88460 -18.68672 -18.64436 -17.93176 -17.55337 -17.01754 -16.82802 -16.55057 -16.42746 -15.79423 -15.47076 -15.25907 -14.85401 -14.56428 -14.48013 -14.32015 -14.27980 -14.21966 -14.08989 -13.94127 -13.48518 -13.42484 -13.38244 -13.33187 -13.19093 -12.91344 -12.88376 -12.59291 -12.56954 -12.43035 -12.11442 -12.00787 -11.95385 -11.86414 -11.74182 -11.43221 -11.38163 -10.82492 -10.73776 -10.60281 -10.12064 -9.49650 -9.20663 -8.23831 -6.36329 0.50398 1.19975 1.38640 1.40400 1.53272 1.69415 2.12769 2.20592 2.41499 2.98312 3.09880 3.25234 3.34835 3.43894 3.55515 3.72707 3.79159 3.88321 4.03229 4.07887 4.17407 4.27964 4.36072 4.37952 4.48011 4.51168 4.56896 4.62633 4.65734 4.66857 4.69357 4.73487 4.81032 4.83196 4.84512 4.88255 4.92767 4.95537 4.96335 5.06821 5.09819 5.15926 5.25950 5.30772 5.35176 5.47433 5.62388 5.82248 5.91112 6.04390 6.17724 6.39590 6.79743 7.32331 7.32963 7.37072 8.88508 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.002576 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.883356 B =10868.634671 C =11532.685959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.029 3.971 3 N -0.403 5.403 4 O 0.073 5.927 5 C -0.013 4.013 6 C -0.073 4.073 7 C -0.207 4.207 8 C 0.130 3.870 9 N -0.523 5.523 10 C 0.054 3.946 11 C -0.129 4.129 12 C -0.118 4.118 13 C 0.080 3.920 14 C -0.144 4.144 15 C 0.096 3.904 16 N -0.621 5.621 17 C 0.145 3.855 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.283 1.283 27 C 0.517 3.483 28 O -0.577 6.577 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.001 0.999 50 H -0.031 1.031 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 19.102 16.099 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 N -0.113 5.113 4 O 0.013 5.987 5 C -0.077 4.077 6 C -0.131 4.131 7 C -0.212 4.212 8 C 0.004 3.996 9 N -0.247 5.247 10 C -0.073 4.073 11 C -0.167 4.167 12 C -0.157 4.157 13 C -0.013 4.013 14 C -0.182 4.182 15 C -0.026 4.026 16 N -0.354 5.354 17 C 0.023 3.977 18 C -0.014 4.014 19 C -0.581 4.581 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.793 3.207 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.209 1.209 27 C 0.304 3.696 28 O -0.455 6.455 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.147 0.853 45 H 0.120 0.880 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.020 0.980 50 H -0.012 1.012 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.700 20.517 15.243 26.694 hybrid contribution 0.116 -1.794 -0.893 2.007 sum -7.584 18.723 14.350 24.779 Atomic orbital electron populations 1.20436 0.84001 1.04978 1.04297 1.23947 1.00139 0.88091 1.00863 1.73818 0.89727 1.25221 1.22560 1.84763 1.21739 1.23474 1.68683 1.24788 0.99591 0.83157 1.00188 1.20449 0.89252 0.98635 1.04728 1.20946 0.91610 0.97360 1.11245 1.20705 1.02470 0.87376 0.89070 1.62983 1.45953 1.00492 1.15295 1.23150 0.91906 0.96009 0.96214 1.22758 1.02134 0.94137 0.97693 1.22717 0.95612 0.98364 0.99002 1.21707 0.93140 0.89010 0.97466 1.23567 1.05562 0.94547 0.94511 1.22348 0.92912 0.98568 0.88775 1.48628 1.35085 1.22873 1.28783 1.21320 0.88670 0.88142 0.99560 1.19207 0.95880 0.93046 0.93220 1.21587 0.97976 1.08249 1.30303 0.91532 1.26012 0.97915 1.00461 0.95426 1.70121 1.21919 1.31203 1.34052 0.85341 0.79159 0.78355 0.77847 1.18192 1.19811 1.20899 1.21172 0.84011 0.81639 0.82788 1.90621 1.54778 1.73488 1.26656 0.89190 0.87787 0.90142 0.88816 0.87263 0.90021 0.88250 0.89667 0.89626 0.92228 0.93942 0.87561 0.93487 0.86019 0.86348 0.85285 0.88005 0.91354 0.93280 0.88950 0.98048 1.01226 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 8.78 71.24 0.63 -0.27 16 2 C 0.03 0.55 6.98 43.58 0.30 0.86 16 3 N -0.40 -9.81 12.07 -49.55 -0.60 -10.41 16 4 O 0.07 1.74 11.20 71.66 0.80 2.55 16 5 C -0.01 -0.26 7.49 25.04 0.19 -0.08 16 6 C -0.07 -1.13 10.23 71.24 0.73 -0.40 16 7 C -0.21 -3.87 5.22 -19.73 -0.10 -3.97 16 8 C 0.13 2.00 3.77 85.56 0.32 2.32 16 9 N -0.52 -11.60 4.90 -846.30 -4.14 -15.74 16 10 C 0.05 1.03 5.51 86.76 0.48 1.51 16 11 C -0.13 -2.77 7.08 32.06 0.23 -2.54 16 12 C -0.12 -2.62 6.07 31.59 0.19 -2.43 16 13 C 0.08 1.93 0.99 3.28 0.00 1.94 16 14 C -0.14 -2.16 5.20 31.46 0.16 -2.00 16 15 C 0.10 2.16 7.36 86.88 0.64 2.80 16 16 N -0.62 -21.82 2.94 -818.12 -2.41 -24.23 16 17 C 0.14 6.16 5.88 86.38 0.51 6.67 16 18 C 0.02 1.33 5.30 29.85 0.16 1.49 16 19 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 20 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 21 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 22 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 23 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 C 0.52 19.39 6.86 87.62 0.60 20.00 16 28 O -0.58 -28.25 17.62 -3.03 -0.05 -28.30 16 29 H 0.09 0.90 7.44 -2.39 -0.02 0.88 16 30 H 0.10 0.65 7.48 -2.38 -0.02 0.63 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.41 6.32 -2.39 -0.02 1.39 16 36 H 0.09 0.80 6.88 -2.39 -0.02 0.78 16 37 H 0.09 1.06 5.19 -2.39 -0.01 1.04 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 42 H 0.12 1.65 7.45 -2.39 -0.02 1.63 16 43 H 0.12 1.29 4.80 -2.39 -0.01 1.28 16 44 H 0.13 1.02 7.44 -2.39 -0.02 1.00 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 2.27 7.94 -2.39 -0.02 2.25 16 48 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 49 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 50 H -0.03 -1.96 8.14 -2.38 -0.02 -1.98 16 51 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -84.20 402.66 2.57 -81.63 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.93 Total: 9.98 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.73 Total: -4.64 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -6.86 Total: -107.82 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: 0.75 Total: -25.75 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -84.20 2.57 -81.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272827020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.338 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds