Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30179 * 126.80070 * 2 1 4 4 O 1.20921 * 111.60625 * 180.25197 * 3 2 1 5 5 C 1.34045 * 111.56677 * 359.74301 * 4 3 2 6 6 C 1.50700 * 126.77834 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44266 * 0.02562 * 5 4 3 8 8 C 1.50700 * 128.00639 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47375 * 89.98959 * 8 7 5 10 10 C 1.48620 * 111.00610 * 287.45207 * 9 8 7 11 11 C 1.55165 * 103.36270 * 200.85312 * 10 9 8 12 12 C 1.53600 * 102.66000 * 36.58319 * 11 10 9 13 13 C 1.53612 * 110.86521 * 217.69861 * 12 11 10 14 14 C 1.54880 * 101.43984 * 215.19578 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.87361 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.34747 * 111.25585 * 342.78285 * 15 14 13 27 27 O 1.21279 * 125.13617 * 181.28918 * 26 15 14 28 28 C 1.48195 * 111.00141 * 169.99840 * 9 8 7 29 29 H 1.09000 * 109.47387 * 270.16387 * 1 2 3 30 30 H 1.08999 * 109.47010 * 30.16390 * 1 2 3 31 31 H 1.09006 * 109.46504 * 150.16305 * 1 2 3 32 32 H 1.09000 * 109.46635 * 270.00376 * 6 5 4 33 33 H 1.09002 * 109.46677 * 30.00528 * 6 5 4 34 34 H 1.08997 * 109.46861 * 150.00913 * 6 5 4 35 35 H 1.09003 * 109.46895 * 329.99483 * 8 7 5 36 36 H 1.08999 * 109.47295 * 209.99490 * 8 7 5 37 37 H 1.08998 * 110.63991 * 319.32126 * 10 9 8 38 38 H 1.09005 * 110.64195 * 82.21787 * 10 9 8 39 39 H 1.09001 * 110.76573 * 278.28925 * 11 10 9 40 40 H 1.08997 * 110.77358 * 154.87949 * 11 10 9 41 41 H 1.09009 * 111.01591 * 333.46821 * 13 12 11 42 42 H 1.09004 * 111.01957 * 97.31105 * 13 12 11 43 43 H 1.09003 * 110.39077 * 265.83776 * 14 13 12 44 44 H 1.09000 * 110.17573 * 143.79937 * 14 13 12 45 45 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 46 46 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 47 47 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 48 48 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 49 49 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 50 50 H 1.09007 * 110.01462 * 26.35110 * 28 9 8 51 51 H 1.08990 * 110.05972 * 264.97260 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6067 -0.0034 6 6 4.9023 -1.3694 -0.0087 7 6 2.3540 -1.1319 0.0028 8 6 1.9591 -2.5863 0.0063 9 7 1.8372 -3.0572 1.3924 10 6 3.1737 -3.1961 2.0274 11 6 2.9117 -4.1724 3.2046 12 6 1.8760 -5.1411 2.6145 13 6 0.8346 -5.5390 3.6713 14 6 0.5512 -7.0116 3.2841 15 7 1.7574 -7.4702 2.5826 16 6 2.0924 -8.8767 2.3465 17 6 2.9282 -9.4049 3.5141 18 6 3.2723 -10.8519 3.2714 19 1 2.9296 -11.3454 2.3740 20 6 4.0256 -11.5456 4.1947 21 7 4.3263 -12.8082 3.9827 22 14 4.6191 -10.6919 5.7466 23 1 3.6059 -10.8556 6.8199 24 1 5.9040 -11.2950 6.1828 25 1 4.8190 -9.2465 5.4709 26 6 2.5131 -6.4302 2.1792 27 8 3.5509 -6.5208 1.5582 28 6 1.2225 -4.4047 1.4433 29 1 -0.3634 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3632 -0.8915 -0.5113 32 1 5.2103 -1.5550 -1.0377 33 1 5.6686 -0.7848 0.5002 34 1 4.7677 -2.3200 0.5073 35 1 2.7205 -3.1707 -0.5103 36 1 1.0028 -2.7044 -0.5030 37 1 3.8899 -3.6237 1.3257 38 1 3.5264 -2.2325 2.3952 39 1 2.4995 -3.6413 4.0627 40 1 3.8243 -4.7018 3.4782 41 1 1.2508 -5.4681 4.6764 42 1 -0.0665 -4.9325 3.5800 43 1 -0.3143 -7.0709 2.6241 44 1 0.3851 -7.6105 4.1795 45 1 2.6635 -8.9640 1.4221 46 1 1.1752 -9.4596 2.2632 47 1 2.3572 -9.3177 4.4384 48 1 3.8455 -8.8219 3.5972 49 1 4.8560 -13.2963 4.6324 50 1 1.4157 -4.9384 0.5126 51 1 0.1486 -4.3198 1.6085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272827336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = 31.717898 kcal Electronic energy + Delta-G solvation = -31334.356213 eV Core-core repulsion = 27236.884824 eV Total energy + Delta-G solvation = -4097.471389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.13473 -41.11879 -38.34558 -36.22404 -35.56176 -34.21044 -33.56822 -32.44048 -31.03161 -29.46167 -28.97709 -28.45946 -28.02695 -26.30715 -25.22771 -23.38715 -22.42454 -21.69177 -21.06621 -20.37587 -20.26452 -18.75392 -17.91528 -17.25348 -17.07650 -16.41173 -16.16569 -15.53881 -15.25649 -14.93199 -14.65795 -14.41117 -14.24680 -14.18852 -13.77597 -13.61011 -13.47166 -13.31378 -13.21421 -12.98407 -12.91269 -12.86070 -12.58435 -12.57201 -12.49768 -12.27023 -11.83117 -11.73417 -11.60007 -11.53050 -11.09315 -11.04831 -10.94306 -10.83955 -10.52095 -10.10162 -10.08767 -9.93143 -9.50631 -9.40877 -9.24323 -8.71172 -8.60279 -8.24358 -6.10919 -4.10186 1.20226 1.94198 2.77837 2.85771 3.25691 3.33718 3.34490 3.39211 3.75407 3.96292 4.15766 4.20654 4.26801 4.36000 4.39981 4.47497 4.69544 4.75786 4.92249 4.94178 5.02309 5.09432 5.10146 5.17111 5.18876 5.23208 5.25705 5.31612 5.36556 5.38485 5.47776 5.49692 5.56817 5.61947 5.64773 5.70108 5.74803 5.78216 5.85875 5.90786 5.93753 5.97548 6.25013 6.50421 6.53149 6.65486 6.74848 7.09698 7.28094 7.54897 7.69963 8.06061 8.41602 8.48395 8.91874 9.50833 11.02103 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002299 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.748577 B =12177.637599 C =12686.211560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.036 3.964 3 N -0.372 5.372 4 O 0.094 5.906 5 C -0.023 4.023 6 C -0.086 4.086 7 C -0.189 4.189 8 C 0.122 3.878 9 N -0.508 5.508 10 C 0.034 3.966 11 C -0.099 4.099 12 C -0.108 4.108 13 C -0.118 4.118 14 C 0.098 3.902 15 N -0.613 5.613 16 C 0.136 3.864 17 C -0.023 4.023 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.900 5.900 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.523 3.477 27 O -0.528 6.528 28 C 0.063 3.937 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.012 0.988 48 H 0.020 0.980 49 H 0.264 0.736 50 H 0.051 0.949 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 25.279 -5.612 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 N -0.079 5.079 4 O 0.030 5.970 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.193 4.193 8 C -0.006 4.006 9 N -0.232 5.232 10 C -0.094 4.094 11 C -0.138 4.138 12 C -0.112 4.112 13 C -0.156 4.156 14 C -0.026 4.026 15 N -0.346 5.346 16 C 0.016 3.984 17 C -0.061 4.061 18 C -0.561 4.561 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.538 5.538 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.191 1.191 26 C 0.309 3.691 27 O -0.404 6.404 28 C -0.065 4.065 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.031 0.969 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.432 26.662 -5.627 28.525 hybrid contribution 0.733 -1.190 0.493 1.482 sum -7.699 25.473 -5.134 27.102 Atomic orbital electron populations 1.20130 0.85971 1.03292 1.03557 1.23394 0.98889 0.88281 1.01771 1.73839 0.89275 1.23981 1.20836 1.84798 1.21700 1.22460 1.68023 1.24287 0.98234 0.83838 1.02365 1.20590 0.90202 0.99161 1.04396 1.20701 0.91457 0.96997 1.10188 1.20416 1.01597 0.88400 0.90171 1.64916 1.19321 1.23393 1.15545 1.23462 0.90396 0.99349 0.96151 1.22335 0.98344 0.95311 0.97778 1.21538 0.97406 0.95029 0.97200 1.22695 0.98810 0.95489 0.98618 1.22177 0.87930 0.94933 0.97513 1.48690 1.22491 1.07418 1.55991 1.21594 0.99821 0.76329 1.00653 1.19882 0.95348 0.97267 0.93649 1.20951 1.33764 0.93518 1.07821 0.90807 1.24980 0.95393 0.94668 0.98158 1.69903 1.38796 1.08875 1.36255 0.86770 0.78455 0.80463 0.83582 1.20262 1.21235 1.19090 1.20243 0.83920 0.85799 0.79103 1.90697 1.22579 1.86322 1.40822 1.22645 0.99511 0.87864 0.96454 0.89906 0.90899 0.90170 0.89305 0.89599 0.88538 0.92779 0.89362 0.92489 0.90009 0.89820 0.90126 0.89701 0.88958 0.91252 0.90067 0.90575 0.90942 0.96937 0.96214 0.92609 0.93025 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.39 36.01 0.37 -0.15 16 2 C 0.04 0.37 7.33 -82.10 -0.60 -0.23 16 3 N -0.37 -4.47 12.07 33.42 0.40 -4.06 16 4 O 0.09 1.04 11.20 17.16 0.19 1.24 16 5 C -0.02 -0.21 7.32 -35.30 -0.26 -0.47 16 6 C -0.09 -0.57 10.19 36.01 0.37 -0.20 16 7 C -0.19 -1.82 5.47 -104.42 -0.57 -2.40 16 8 C 0.12 1.08 4.97 -4.98 -0.02 1.06 16 9 N -0.51 -4.87 5.25 -232.05 -1.22 -6.09 16 10 C 0.03 0.34 4.76 -1.73 -0.01 0.33 16 11 C -0.10 -1.09 6.02 -25.27 -0.15 -1.24 16 12 C -0.11 -1.25 0.77 -155.25 -0.12 -1.36 16 13 C -0.12 -1.11 6.11 -25.42 -0.16 -1.27 16 14 C 0.10 1.12 7.37 -2.84 -0.02 1.10 16 15 N -0.61 -9.97 2.94 -172.42 -0.51 -10.48 16 16 C 0.14 2.67 5.89 -4.04 -0.02 2.65 16 17 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 16 18 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 19 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 22 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 26 C 0.52 8.64 6.48 -11.22 -0.07 8.56 16 27 O -0.53 -10.78 17.44 5.56 0.10 -10.69 16 28 C 0.06 0.62 6.02 -3.11 -0.02 0.61 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.68 4.80 -51.93 -0.25 0.43 16 35 H 0.05 0.50 7.76 -51.93 -0.40 0.09 16 36 H 0.09 0.68 7.59 -51.93 -0.39 0.28 16 37 H 0.06 0.63 6.17 -51.93 -0.32 0.31 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.08 0.79 7.83 -51.93 -0.41 0.38 16 40 H 0.08 1.03 7.81 -51.93 -0.41 0.62 16 41 H 0.08 0.79 7.87 -51.92 -0.41 0.38 16 42 H 0.09 0.64 7.44 -51.93 -0.39 0.25 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.61 7.93 -51.93 -0.41 1.20 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 48 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 51 H 0.09 0.73 7.31 -51.93 -0.38 0.35 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -34.60 403.36 -8.97 -43.57 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -8.28 Total: -3.11 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.84 Total: -6.81 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.55 Total: -47.39 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.29 Total: -9.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.60 -8.97 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272827336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.285 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds