Wall clock time and date at job start Wed Apr 1 2020 04:46:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30179 * 126.80070 * 2 1
4 4 O 1.20921 * 111.60625 * 180.25197 * 3 2 1
5 5 C 1.34045 * 111.56677 * 359.74301 * 4 3 2
6 6 C 1.50700 * 126.77834 * 179.97438 * 5 4 3
7 7 C 1.35451 * 106.44266 * 0.02562 * 5 4 3
8 8 C 1.50700 * 128.00639 * 179.97438 * 7 5 4
9 9 N 1.46895 * 109.47375 * 89.98959 * 8 7 5
10 10 C 1.48620 * 111.00610 * 287.45207 * 9 8 7
11 11 C 1.55165 * 103.36270 * 200.85312 * 10 9 8
12 12 C 1.53600 * 102.66000 * 36.58319 * 11 10 9
13 13 C 1.53612 * 110.86521 * 217.69861 * 12 11 10
14 14 C 1.54880 * 101.43984 * 215.19578 * 13 12 11
15 15 N 1.46880 * 105.42958 * 24.87361 * 14 13 12
16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13
17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14
18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15
19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16
20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16
21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17
22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17
23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18
24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18
25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18
26 26 C 1.34747 * 111.25585 * 342.78285 * 15 14 13
27 27 O 1.21279 * 125.13617 * 181.28918 * 26 15 14
28 28 C 1.48195 * 111.00141 * 169.99840 * 9 8 7
29 29 H 1.09000 * 109.47387 * 270.16387 * 1 2 3
30 30 H 1.08999 * 109.47010 * 30.16390 * 1 2 3
31 31 H 1.09006 * 109.46504 * 150.16305 * 1 2 3
32 32 H 1.09000 * 109.46635 * 270.00376 * 6 5 4
33 33 H 1.09002 * 109.46677 * 30.00528 * 6 5 4
34 34 H 1.08997 * 109.46861 * 150.00913 * 6 5 4
35 35 H 1.09003 * 109.46895 * 329.99483 * 8 7 5
36 36 H 1.08999 * 109.47295 * 209.99490 * 8 7 5
37 37 H 1.08998 * 110.63991 * 319.32126 * 10 9 8
38 38 H 1.09005 * 110.64195 * 82.21787 * 10 9 8
39 39 H 1.09001 * 110.76573 * 278.28925 * 11 10 9
40 40 H 1.08997 * 110.77358 * 154.87949 * 11 10 9
41 41 H 1.09009 * 111.01591 * 333.46821 * 13 12 11
42 42 H 1.09004 * 111.01957 * 97.31105 * 13 12 11
43 43 H 1.09003 * 110.39077 * 265.83776 * 14 13 12
44 44 H 1.09000 * 110.17573 * 143.79937 * 14 13 12
45 45 H 1.09002 * 109.47129 * 149.72567 * 16 15 14
46 46 H 1.08998 * 109.46845 * 29.73374 * 16 15 14
47 47 H 1.09002 * 109.47153 * 59.99757 * 17 16 15
48 48 H 1.09001 * 109.46832 * 299.99948 * 17 16 15
49 49 H 0.97002 * 119.99739 * 180.02562 * 21 20 18
50 50 H 1.09007 * 110.01462 * 26.35110 * 28 9 8
51 51 H 1.08990 * 110.05972 * 264.97260 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0424 0.0000
4 8 3.4537 0.7255 -0.0049
5 6 3.6025 -0.6067 -0.0034
6 6 4.9023 -1.3694 -0.0087
7 6 2.3540 -1.1319 0.0028
8 6 1.9591 -2.5863 0.0063
9 7 1.8372 -3.0572 1.3924
10 6 3.1737 -3.1961 2.0274
11 6 2.9117 -4.1724 3.2046
12 6 1.8760 -5.1411 2.6145
13 6 0.8346 -5.5390 3.6713
14 6 0.5512 -7.0116 3.2841
15 7 1.7574 -7.4702 2.5826
16 6 2.0924 -8.8767 2.3465
17 6 2.9282 -9.4049 3.5141
18 6 3.2723 -10.8519 3.2714
19 1 2.9296 -11.3454 2.3740
20 6 4.0256 -11.5456 4.1947
21 7 4.3263 -12.8082 3.9827
22 14 4.6191 -10.6919 5.7466
23 1 3.6059 -10.8556 6.8199
24 1 5.9040 -11.2950 6.1828
25 1 4.8190 -9.2465 5.4709
26 6 2.5131 -6.4302 2.1792
27 8 3.5509 -6.5208 1.5582
28 6 1.2225 -4.4047 1.4433
29 1 -0.3634 0.0029 1.0276
30 1 -0.3633 0.8885 -0.5164
31 1 -0.3632 -0.8915 -0.5113
32 1 5.2103 -1.5550 -1.0377
33 1 5.6686 -0.7848 0.5002
34 1 4.7677 -2.3200 0.5073
35 1 2.7205 -3.1707 -0.5103
36 1 1.0028 -2.7044 -0.5030
37 1 3.8899 -3.6237 1.3257
38 1 3.5264 -2.2325 2.3952
39 1 2.4995 -3.6413 4.0627
40 1 3.8243 -4.7018 3.4782
41 1 1.2508 -5.4681 4.6764
42 1 -0.0665 -4.9325 3.5800
43 1 -0.3143 -7.0709 2.6241
44 1 0.3851 -7.6105 4.1795
45 1 2.6635 -8.9640 1.4221
46 1 1.1752 -9.4596 2.2632
47 1 2.3572 -9.3177 4.4384
48 1 3.8455 -8.8219 3.5972
49 1 4.8560 -13.2963 4.6324
50 1 1.4157 -4.9384 0.5126
51 1 0.1486 -4.3198 1.6085
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001272827336.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:24
Heat of formation + Delta-G solvation = 8.538876 kcal
Electronic energy + Delta-G solvation = -31335.361331 eV
Core-core repulsion = 27236.884824 eV
Total energy + Delta-G solvation = -4098.476507 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-45.88938 -42.16054 -39.30731 -37.51495 -36.49021 -35.53047 -34.68402 -33.85039
-32.28218 -30.74237 -29.62827 -29.20159 -28.86134 -27.29542 -26.74902 -24.31618
-23.34399 -23.10873 -21.93073 -21.59758 -21.00329 -19.93413 -19.09167 -18.68890
-18.04458 -17.37728 -17.30145 -16.68525 -16.48686 -16.08497 -15.84192 -15.51039
-15.21787 -15.09462 -14.81206 -14.73569 -14.57970 -14.31197 -14.24523 -14.00442
-13.87642 -13.78292 -13.51546 -13.49278 -13.28812 -13.24200 -13.04506 -12.92158
-12.59150 -12.49034 -12.44649 -12.29231 -11.97598 -11.88491 -11.79445 -11.70540
-11.65144 -11.52576 -10.83198 -10.82320 -10.63066 -10.18431 -9.59881 -9.48088
-8.35131 -6.40145 0.47227 1.21371 1.29090 1.33399 1.44515 1.53945
2.11145 2.17303 2.30670 2.96275 2.99746 3.24605 3.33952 3.39278
3.52946 3.55921 3.75002 3.94764 3.99421 4.08775 4.24536 4.25759
4.32938 4.34681 4.44850 4.51516 4.53263 4.57030 4.59592 4.62940
4.71752 4.73569 4.74999 4.77996 4.80309 4.86748 4.88081 4.94304
4.97485 5.02074 5.12108 5.13428 5.15568 5.22619 5.27815 5.31046
5.48608 5.72170 5.72967 5.89858 6.18385 6.27257 6.66361 7.18191
7.25405 7.31746 8.81111
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021099 B = 0.002299 C = 0.002207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1326.748577 B =12177.637599 C =12686.211560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.033 3.967
3 N -0.403 5.403
4 O 0.077 5.923
5 C -0.022 4.022
6 C -0.085 4.085
7 C -0.198 4.198
8 C 0.125 3.875
9 N -0.501 5.501
10 C 0.037 3.963
11 C -0.099 4.099
12 C -0.100 4.100
13 C -0.105 4.105
14 C 0.089 3.911
15 N -0.619 5.619
16 C 0.147 3.853
17 C -0.013 4.013
18 C -0.533 4.533
19 H 0.039 0.961
20 C 0.009 3.991
21 N -0.945 5.945
22 Si 0.949 3.051
23 H -0.256 1.256
24 H -0.283 1.283
25 H -0.262 1.262
26 C 0.510 3.490
27 O -0.581 6.581
28 C 0.067 3.933
29 H 0.090 0.910
30 H 0.075 0.925
31 H 0.097 0.903
32 H 0.101 0.899
33 H 0.099 0.901
34 H 0.092 0.908
35 H 0.047 0.953
36 H 0.105 0.895
37 H 0.042 0.958
38 H 0.088 0.912
39 H 0.107 0.893
40 H 0.055 0.945
41 H 0.089 0.911
42 H 0.132 0.868
43 H 0.097 0.903
44 H 0.084 0.916
45 H 0.049 0.951
46 H 0.089 0.911
47 H 0.028 0.972
48 H -0.002 1.002
49 H 0.268 0.732
50 H 0.035 0.965
51 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.795 27.418 -4.006 29.737
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.126 4.126
3 N -0.113 5.113
4 O 0.017 5.983
5 C -0.087 4.087
6 C -0.142 4.142
7 C -0.203 4.203
8 C -0.003 4.003
9 N -0.225 5.225
10 C -0.090 4.090
11 C -0.138 4.138
12 C -0.104 4.104
13 C -0.143 4.143
14 C -0.032 4.032
15 N -0.351 5.351
16 C 0.025 3.975
17 C -0.051 4.051
18 C -0.572 4.572
19 H 0.058 0.942
20 C -0.188 4.188
21 N -0.585 5.585
22 Si 0.773 3.227
23 H -0.180 1.180
24 H -0.208 1.208
25 H -0.186 1.186
26 C 0.298 3.702
27 O -0.461 6.461
28 C -0.060 4.060
29 H 0.108 0.892
30 H 0.094 0.906
31 H 0.116 0.884
32 H 0.119 0.881
33 H 0.117 0.883
34 H 0.111 0.889
35 H 0.065 0.935
36 H 0.123 0.877
37 H 0.060 0.940
38 H 0.107 0.893
39 H 0.125 0.875
40 H 0.074 0.926
41 H 0.108 0.892
42 H 0.150 0.850
43 H 0.116 0.884
44 H 0.103 0.897
45 H 0.067 0.933
46 H 0.108 0.892
47 H 0.046 0.954
48 H 0.016 0.984
49 H 0.077 0.923
50 H 0.054 0.946
51 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -10.706 28.819 -4.009 31.004
hybrid contribution 1.449 -1.929 -0.110 2.416
sum -9.257 26.890 -4.119 28.735
Atomic orbital electron populations
1.20262 0.84003 1.04338 1.04302 1.23927 1.00234 0.88000 1.00449
1.73833 0.89734 1.25109 1.22646 1.84762 1.21660 1.23276 1.68580
1.24753 0.99279 0.83409 1.01218 1.20683 0.89505 0.98720 1.05333
1.20828 0.91486 0.97229 1.10716 1.20429 1.02265 0.87719 0.89851
1.64988 1.18633 1.22998 1.15872 1.23407 0.90619 0.99302 0.95706
1.22359 0.97356 0.95227 0.98813 1.21521 0.97943 0.92357 0.98578
1.22787 0.99496 0.94183 0.97820 1.22566 0.86597 0.96234 0.97841
1.48773 1.24211 1.05801 1.56333 1.21146 0.99555 0.79098 0.97697
1.19723 0.95241 0.94185 0.95951 1.21279 1.33560 0.95728 1.06590
0.94227 1.25938 0.95593 0.95319 1.01991 1.70045 1.39946 1.10619
1.37861 0.85672 0.78410 0.79173 0.79447 1.17991 1.20845 1.18641
1.21208 0.83240 0.87676 0.78041 1.90657 1.24983 1.87372 1.43054
1.22725 1.00984 0.87398 0.94940 0.89151 0.90571 0.88440 0.88060
0.88266 0.88937 0.93473 0.87708 0.94027 0.89346 0.87459 0.92606
0.89190 0.85004 0.88442 0.89710 0.93271 0.89228 0.95370 0.98375
0.92298 0.94605 0.85855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.87 10.39 71.24 0.74 -0.13 16
2 C 0.03 0.63 7.33 43.58 0.32 0.95 16
3 N -0.40 -9.43 12.07 -49.55 -0.60 -10.03 16
4 O 0.08 1.70 11.20 71.58 0.80 2.50 16
5 C -0.02 -0.40 7.32 25.04 0.18 -0.22 16
6 C -0.09 -1.07 10.19 71.24 0.73 -0.34 16
7 C -0.20 -3.54 5.47 -19.74 -0.11 -3.65 16
8 C 0.13 1.98 4.97 85.56 0.43 2.41 16
9 N -0.50 -8.31 5.25 -888.08 -4.66 -12.96 16
10 C 0.04 0.70 4.76 86.71 0.41 1.11 16
11 C -0.10 -1.99 6.02 31.54 0.19 -1.80 16
12 C -0.10 -2.06 0.77 -52.66 -0.04 -2.10 16
13 C -0.11 -1.50 6.11 31.44 0.19 -1.31 16
14 C 0.09 1.72 7.37 86.95 0.64 2.36 16
15 N -0.62 -19.39 2.94 -817.81 -2.41 -21.80 16
16 C 0.15 5.82 5.89 86.38 0.51 6.33 16
17 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16
18 C -0.53 -30.88 9.66 25.60 0.25 -30.64 16
19 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16
20 C 0.01 0.55 5.47 84.66 0.46 1.01 16
21 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16
22 Si 0.95 44.88 27.47 68.60 1.88 46.76 16
23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16
24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
25 H -0.26 -12.11 6.54 99.48 0.65 -11.45 16
26 C 0.51 16.60 6.48 87.52 0.57 17.16 16
27 O -0.58 -24.59 17.44 -3.03 -0.05 -24.64 16
28 C 0.07 1.12 6.02 86.05 0.52 1.64 16
29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16
31 H 0.10 0.83 7.65 -2.38 -0.02 0.81 16
32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
34 H 0.09 1.27 4.80 -2.39 -0.01 1.26 16
35 H 0.05 0.82 7.76 -2.39 -0.02 0.80 16
36 H 0.10 1.31 7.59 -2.39 -0.02 1.29 16
37 H 0.04 0.92 6.17 -2.39 -0.01 0.91 16
38 H 0.09 1.54 8.09 -2.38 -0.02 1.53 16
39 H 0.11 1.65 7.83 -2.39 -0.02 1.63 16
40 H 0.06 1.41 7.81 -2.39 -0.02 1.39 16
41 H 0.09 1.25 7.87 -2.38 -0.02 1.23 16
42 H 0.13 0.93 7.44 -2.39 -0.02 0.92 16
43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
45 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16
46 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16
47 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16
48 H 0.00 -0.11 7.20 -2.39 -0.02 -0.13 16
49 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
50 H 0.04 0.73 7.38 -2.38 -0.02 0.71 16
51 H 0.12 1.31 7.31 -2.39 -0.02 1.30 16
Total: -1.00 -79.06 403.36 2.25 -76.80
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: 0.87 Total: 9.89 kcal
Atomic # 6 Polarization: -13.80 SS G_CDS: 6.12 Total: -7.68 kcal
Atomic # 7 Polarization: -96.27 SS G_CDS: -7.37 Total: -103.64 kcal
Atomic # 8 Polarization: -22.89 SS G_CDS: 0.75 Total: -22.14 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal
Total: -79.06 2.25 -76.80 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272827336.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.342 kcal
(2) G-P(sol) polarization free energy of solvation -79.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds