Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30179 * 126.80070 * 2 1 4 4 O 1.20921 * 111.60625 * 180.25197 * 3 2 1 5 5 C 1.34045 * 111.56677 * 359.74301 * 4 3 2 6 6 C 1.50700 * 126.77834 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44266 * 0.02562 * 5 4 3 8 8 C 1.50700 * 128.00639 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47375 * 89.98959 * 8 7 5 10 10 C 1.48620 * 111.00610 * 287.45207 * 9 8 7 11 11 C 1.55165 * 103.36270 * 200.85312 * 10 9 8 12 12 C 1.53600 * 102.66000 * 36.58319 * 11 10 9 13 13 C 1.53612 * 110.86521 * 217.69861 * 12 11 10 14 14 C 1.54880 * 101.43984 * 215.19578 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.87361 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.34747 * 111.25585 * 342.78285 * 15 14 13 27 27 O 1.21279 * 125.13617 * 181.28918 * 26 15 14 28 28 C 1.48195 * 111.00141 * 169.99840 * 9 8 7 29 29 H 1.09000 * 109.47387 * 270.16387 * 1 2 3 30 30 H 1.08999 * 109.47010 * 30.16390 * 1 2 3 31 31 H 1.09006 * 109.46504 * 150.16305 * 1 2 3 32 32 H 1.09000 * 109.46635 * 270.00376 * 6 5 4 33 33 H 1.09002 * 109.46677 * 30.00528 * 6 5 4 34 34 H 1.08997 * 109.46861 * 150.00913 * 6 5 4 35 35 H 1.09003 * 109.46895 * 329.99483 * 8 7 5 36 36 H 1.08999 * 109.47295 * 209.99490 * 8 7 5 37 37 H 1.08998 * 110.63991 * 319.32126 * 10 9 8 38 38 H 1.09005 * 110.64195 * 82.21787 * 10 9 8 39 39 H 1.09001 * 110.76573 * 278.28925 * 11 10 9 40 40 H 1.08997 * 110.77358 * 154.87949 * 11 10 9 41 41 H 1.09009 * 111.01591 * 333.46821 * 13 12 11 42 42 H 1.09004 * 111.01957 * 97.31105 * 13 12 11 43 43 H 1.09003 * 110.39077 * 265.83776 * 14 13 12 44 44 H 1.09000 * 110.17573 * 143.79937 * 14 13 12 45 45 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 46 46 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 47 47 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 48 48 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 49 49 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 50 50 H 1.09007 * 110.01462 * 26.35110 * 28 9 8 51 51 H 1.08990 * 110.05972 * 264.97260 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6067 -0.0034 6 6 4.9023 -1.3694 -0.0087 7 6 2.3540 -1.1319 0.0028 8 6 1.9591 -2.5863 0.0063 9 7 1.8372 -3.0572 1.3924 10 6 3.1737 -3.1961 2.0274 11 6 2.9117 -4.1724 3.2046 12 6 1.8760 -5.1411 2.6145 13 6 0.8346 -5.5390 3.6713 14 6 0.5512 -7.0116 3.2841 15 7 1.7574 -7.4702 2.5826 16 6 2.0924 -8.8767 2.3465 17 6 2.9282 -9.4049 3.5141 18 6 3.2723 -10.8519 3.2714 19 1 2.9296 -11.3454 2.3740 20 6 4.0256 -11.5456 4.1947 21 7 4.3263 -12.8082 3.9827 22 14 4.6191 -10.6919 5.7466 23 1 3.6059 -10.8556 6.8199 24 1 5.9040 -11.2950 6.1828 25 1 4.8190 -9.2465 5.4709 26 6 2.5131 -6.4302 2.1792 27 8 3.5509 -6.5208 1.5582 28 6 1.2225 -4.4047 1.4433 29 1 -0.3634 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3632 -0.8915 -0.5113 32 1 5.2103 -1.5550 -1.0377 33 1 5.6686 -0.7848 0.5002 34 1 4.7677 -2.3200 0.5073 35 1 2.7205 -3.1707 -0.5103 36 1 1.0028 -2.7044 -0.5030 37 1 3.8899 -3.6237 1.3257 38 1 3.5264 -2.2325 2.3952 39 1 2.4995 -3.6413 4.0627 40 1 3.8243 -4.7018 3.4782 41 1 1.2508 -5.4681 4.6764 42 1 -0.0665 -4.9325 3.5800 43 1 -0.3143 -7.0709 2.6241 44 1 0.3851 -7.6105 4.1795 45 1 2.6635 -8.9640 1.4221 46 1 1.1752 -9.4596 2.2632 47 1 2.3572 -9.3177 4.4384 48 1 3.8455 -8.8219 3.5972 49 1 4.8560 -13.2963 4.6324 50 1 1.4157 -4.9384 0.5126 51 1 0.1486 -4.3198 1.6085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272827336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = 8.538876 kcal Electronic energy + Delta-G solvation = -31335.361331 eV Core-core repulsion = 27236.884824 eV Total energy + Delta-G solvation = -4098.476507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.88938 -42.16054 -39.30731 -37.51495 -36.49021 -35.53047 -34.68402 -33.85039 -32.28218 -30.74237 -29.62827 -29.20159 -28.86134 -27.29542 -26.74902 -24.31618 -23.34399 -23.10873 -21.93073 -21.59758 -21.00329 -19.93413 -19.09167 -18.68890 -18.04458 -17.37728 -17.30145 -16.68525 -16.48686 -16.08497 -15.84192 -15.51039 -15.21787 -15.09462 -14.81206 -14.73569 -14.57970 -14.31197 -14.24523 -14.00442 -13.87642 -13.78292 -13.51546 -13.49278 -13.28812 -13.24200 -13.04506 -12.92158 -12.59150 -12.49034 -12.44649 -12.29231 -11.97598 -11.88491 -11.79445 -11.70540 -11.65144 -11.52576 -10.83198 -10.82320 -10.63066 -10.18431 -9.59881 -9.48088 -8.35131 -6.40145 0.47227 1.21371 1.29090 1.33399 1.44515 1.53945 2.11145 2.17303 2.30670 2.96275 2.99746 3.24605 3.33952 3.39278 3.52946 3.55921 3.75002 3.94764 3.99421 4.08775 4.24536 4.25759 4.32938 4.34681 4.44850 4.51516 4.53263 4.57030 4.59592 4.62940 4.71752 4.73569 4.74999 4.77996 4.80309 4.86748 4.88081 4.94304 4.97485 5.02074 5.12108 5.13428 5.15568 5.22619 5.27815 5.31046 5.48608 5.72170 5.72967 5.89858 6.18385 6.27257 6.66361 7.18191 7.25405 7.31746 8.81111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002299 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.748577 B =12177.637599 C =12686.211560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 N -0.403 5.403 4 O 0.077 5.923 5 C -0.022 4.022 6 C -0.085 4.085 7 C -0.198 4.198 8 C 0.125 3.875 9 N -0.501 5.501 10 C 0.037 3.963 11 C -0.099 4.099 12 C -0.100 4.100 13 C -0.105 4.105 14 C 0.089 3.911 15 N -0.619 5.619 16 C 0.147 3.853 17 C -0.013 4.013 18 C -0.533 4.533 19 H 0.039 0.961 20 C 0.009 3.991 21 N -0.945 5.945 22 Si 0.949 3.051 23 H -0.256 1.256 24 H -0.283 1.283 25 H -0.262 1.262 26 C 0.510 3.490 27 O -0.581 6.581 28 C 0.067 3.933 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.028 0.972 48 H -0.002 1.002 49 H 0.268 0.732 50 H 0.035 0.965 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 27.418 -4.006 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 N -0.113 5.113 4 O 0.017 5.983 5 C -0.087 4.087 6 C -0.142 4.142 7 C -0.203 4.203 8 C -0.003 4.003 9 N -0.225 5.225 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.143 4.143 14 C -0.032 4.032 15 N -0.351 5.351 16 C 0.025 3.975 17 C -0.051 4.051 18 C -0.572 4.572 19 H 0.058 0.942 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.773 3.227 23 H -0.180 1.180 24 H -0.208 1.208 25 H -0.186 1.186 26 C 0.298 3.702 27 O -0.461 6.461 28 C -0.060 4.060 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.150 0.850 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.046 0.954 48 H 0.016 0.984 49 H 0.077 0.923 50 H 0.054 0.946 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.706 28.819 -4.009 31.004 hybrid contribution 1.449 -1.929 -0.110 2.416 sum -9.257 26.890 -4.119 28.735 Atomic orbital electron populations 1.20262 0.84003 1.04338 1.04302 1.23927 1.00234 0.88000 1.00449 1.73833 0.89734 1.25109 1.22646 1.84762 1.21660 1.23276 1.68580 1.24753 0.99279 0.83409 1.01218 1.20683 0.89505 0.98720 1.05333 1.20828 0.91486 0.97229 1.10716 1.20429 1.02265 0.87719 0.89851 1.64988 1.18633 1.22998 1.15872 1.23407 0.90619 0.99302 0.95706 1.22359 0.97356 0.95227 0.98813 1.21521 0.97943 0.92357 0.98578 1.22787 0.99496 0.94183 0.97820 1.22566 0.86597 0.96234 0.97841 1.48773 1.24211 1.05801 1.56333 1.21146 0.99555 0.79098 0.97697 1.19723 0.95241 0.94185 0.95951 1.21279 1.33560 0.95728 1.06590 0.94227 1.25938 0.95593 0.95319 1.01991 1.70045 1.39946 1.10619 1.37861 0.85672 0.78410 0.79173 0.79447 1.17991 1.20845 1.18641 1.21208 0.83240 0.87676 0.78041 1.90657 1.24983 1.87372 1.43054 1.22725 1.00984 0.87398 0.94940 0.89151 0.90571 0.88440 0.88060 0.88266 0.88937 0.93473 0.87708 0.94027 0.89346 0.87459 0.92606 0.89190 0.85004 0.88442 0.89710 0.93271 0.89228 0.95370 0.98375 0.92298 0.94605 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.39 71.24 0.74 -0.13 16 2 C 0.03 0.63 7.33 43.58 0.32 0.95 16 3 N -0.40 -9.43 12.07 -49.55 -0.60 -10.03 16 4 O 0.08 1.70 11.20 71.58 0.80 2.50 16 5 C -0.02 -0.40 7.32 25.04 0.18 -0.22 16 6 C -0.09 -1.07 10.19 71.24 0.73 -0.34 16 7 C -0.20 -3.54 5.47 -19.74 -0.11 -3.65 16 8 C 0.13 1.98 4.97 85.56 0.43 2.41 16 9 N -0.50 -8.31 5.25 -888.08 -4.66 -12.96 16 10 C 0.04 0.70 4.76 86.71 0.41 1.11 16 11 C -0.10 -1.99 6.02 31.54 0.19 -1.80 16 12 C -0.10 -2.06 0.77 -52.66 -0.04 -2.10 16 13 C -0.11 -1.50 6.11 31.44 0.19 -1.31 16 14 C 0.09 1.72 7.37 86.95 0.64 2.36 16 15 N -0.62 -19.39 2.94 -817.81 -2.41 -21.80 16 16 C 0.15 5.82 5.89 86.38 0.51 6.33 16 17 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16 18 C -0.53 -30.88 9.66 25.60 0.25 -30.64 16 19 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 20 C 0.01 0.55 5.47 84.66 0.46 1.01 16 21 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 22 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.26 -12.11 6.54 99.48 0.65 -11.45 16 26 C 0.51 16.60 6.48 87.52 0.57 17.16 16 27 O -0.58 -24.59 17.44 -3.03 -0.05 -24.64 16 28 C 0.07 1.12 6.02 86.05 0.52 1.64 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.83 7.65 -2.38 -0.02 0.81 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.27 4.80 -2.39 -0.01 1.26 16 35 H 0.05 0.82 7.76 -2.39 -0.02 0.80 16 36 H 0.10 1.31 7.59 -2.39 -0.02 1.29 16 37 H 0.04 0.92 6.17 -2.39 -0.01 0.91 16 38 H 0.09 1.54 8.09 -2.38 -0.02 1.53 16 39 H 0.11 1.65 7.83 -2.39 -0.02 1.63 16 40 H 0.06 1.41 7.81 -2.39 -0.02 1.39 16 41 H 0.09 1.25 7.87 -2.38 -0.02 1.23 16 42 H 0.13 0.93 7.44 -2.39 -0.02 0.92 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 46 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 48 H 0.00 -0.11 7.20 -2.39 -0.02 -0.13 16 49 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 50 H 0.04 0.73 7.38 -2.38 -0.02 0.71 16 51 H 0.12 1.31 7.31 -2.39 -0.02 1.30 16 Total: -1.00 -79.06 403.36 2.25 -76.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.87 Total: 9.89 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.12 Total: -7.68 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -7.37 Total: -103.64 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.75 Total: -22.14 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -79.06 2.25 -76.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272827336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.342 kcal (2) G-P(sol) polarization free energy of solvation -79.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds