Wall clock time and date at job start Wed Apr 1 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41382 * 126.80106 * 2 1 4 4 C 1.35457 * 103.98411 * 180.10134 * 3 2 1 5 5 C 1.50697 * 126.77397 * 179.91292 * 4 3 2 6 6 N 1.46907 * 109.47224 * 89.70832 * 5 4 3 7 7 C 1.46972 * 110.99827 * 59.83426 * 6 5 4 8 8 C 1.53044 * 109.47068 * 184.60425 * 7 6 5 9 9 C 1.53135 * 109.34431 * 300.16793 * 8 7 6 10 10 C 1.53244 * 109.06188 * 58.33456 * 9 8 7 11 11 C 1.45969 * 110.99946 * 184.32781 * 6 5 4 12 12 C 1.53968 * 110.71498 * 299.72980 * 11 6 5 13 13 C 1.51431 * 104.07152 * 142.24866 * 12 11 6 14 14 O 1.21287 * 124.94275 * 164.24677 * 13 12 11 15 15 N 1.34701 * 110.14416 * 344.29838 * 13 12 11 16 16 C 1.46498 * 124.47652 * 179.60371 * 15 13 12 17 17 C 1.53002 * 109.47388 * 269.97699 * 16 15 13 18 18 C 1.50697 * 109.47246 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99919 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00027 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47314 * 89.99920 * 22 20 18 24 24 H 1.48502 * 109.46843 * 209.99787 * 22 20 18 25 25 H 1.48498 * 109.46743 * 329.99382 * 22 20 18 26 26 C 1.46921 * 111.17272 * 359.58415 * 15 13 12 27 27 O 1.34038 * 106.44606 * 359.64571 * 4 3 2 28 28 N 1.20923 * 111.56963 * 0.23926 * 27 4 3 29 29 H 1.09005 * 109.46907 * 270.28827 * 1 2 3 30 30 H 1.09000 * 109.47450 * 30.28775 * 1 2 3 31 31 H 1.09002 * 109.47345 * 150.29132 * 1 2 3 32 32 H 1.07994 * 128.01014 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47636 * 329.70335 * 5 4 3 34 34 H 1.09001 * 109.46897 * 209.70325 * 5 4 3 35 35 H 1.08996 * 109.47528 * 304.60511 * 7 6 5 36 36 H 1.09003 * 109.46812 * 64.60946 * 7 6 5 37 37 H 1.09005 * 109.48805 * 60.13319 * 8 7 6 38 38 H 1.09000 * 109.48777 * 180.20974 * 8 7 6 39 39 H 1.09010 * 109.53508 * 178.20615 * 9 8 7 40 40 H 1.09000 * 109.54100 * 298.37349 * 9 8 7 41 41 H 1.08996 * 109.47706 * 183.58500 * 10 9 8 42 42 H 1.09009 * 109.47995 * 63.55702 * 10 9 8 43 43 H 1.09003 * 110.50612 * 260.89287 * 12 11 6 44 44 H 1.08999 * 110.50868 * 23.59649 * 12 11 6 45 45 H 1.08995 * 109.47064 * 29.97855 * 16 15 13 46 46 H 1.09008 * 109.47220 * 149.97500 * 16 15 13 47 47 H 1.09000 * 109.46469 * 300.00223 * 17 16 15 48 48 H 1.09000 * 109.46749 * 59.99755 * 17 16 15 49 49 H 0.97003 * 120.00134 * 179.97438 * 21 20 18 50 50 H 1.08997 * 110.26774 * 257.46364 * 26 15 13 51 51 H 1.08996 * 110.26713 * 135.48890 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0023 5 6 4.9021 1.3696 -0.0052 6 7 5.3237 1.6240 1.3789 7 6 5.5145 0.3642 2.1114 8 6 5.8402 0.6695 3.5752 9 6 7.1209 1.5061 3.6461 10 6 6.9205 2.7968 2.8448 11 6 6.5269 2.4496 1.4159 12 6 7.6902 1.7497 0.6897 13 6 8.4146 2.8764 -0.0165 14 8 9.5342 2.8017 -0.4769 15 7 7.6356 3.9745 -0.0583 16 6 8.0307 5.2491 -0.6629 17 6 8.7092 6.1254 0.3920 18 6 9.1151 7.4367 -0.2298 19 1 8.9093 7.6264 -1.2730 20 6 9.7491 8.3943 0.5329 21 7 9.9993 8.1636 1.8033 22 14 10.2516 10.0202 -0.2376 23 1 9.1433 10.9982 -0.0968 24 1 11.4612 10.5405 0.4491 25 1 10.5501 9.8141 -1.6776 26 6 6.3362 3.7280 0.5815 27 8 3.4537 -0.7253 0.0044 28 7 2.2868 -1.0423 0.0056 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3634 -0.8926 -0.5093 32 1 2.0709 2.1743 0.0004 33 1 4.7654 2.3185 -0.5236 34 1 5.6662 0.7834 -0.5158 35 1 4.6015 -0.2289 2.0584 36 1 6.3372 -0.1945 1.6650 37 1 5.0167 1.2262 4.0225 38 1 5.9855 -0.2646 4.1179 39 1 7.3384 1.7523 4.6855 40 1 7.9507 0.9389 3.2245 41 1 7.8488 3.3679 2.8375 42 1 6.1313 3.3916 3.3049 43 1 8.3500 1.2619 1.4073 44 1 7.3101 1.0277 -0.0330 45 1 8.7253 5.0628 -1.4819 46 1 7.1466 5.7595 -1.0452 47 1 8.0145 6.3116 1.2110 48 1 9.5932 5.6150 0.7742 49 1 10.4458 8.8372 2.3399 50 1 5.5662 3.5741 -0.1745 51 1 6.0687 4.5641 1.2275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273817564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:14 Heat of formation + Delta-G solvation = 33.549609 kcal Electronic energy + Delta-G solvation = -31799.593765 eV Core-core repulsion = 27702.201806 eV Total energy + Delta-G solvation = -4097.391960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.16949 -41.32081 -38.46847 -35.71512 -35.10197 -34.76161 -33.72452 -32.23932 -31.58458 -29.71967 -28.98287 -28.41038 -27.06290 -26.18147 -24.46760 -23.81167 -23.01820 -21.72858 -21.36869 -20.29421 -19.28465 -18.61448 -17.94233 -17.55195 -16.73248 -16.51992 -16.02812 -15.62563 -15.17860 -15.11066 -14.69045 -14.52794 -14.30457 -14.11842 -13.86615 -13.70632 -13.48623 -13.42592 -13.30198 -13.03628 -12.91458 -12.68193 -12.46814 -12.43179 -12.22763 -12.06124 -11.72348 -11.39923 -11.36635 -11.21986 -10.96984 -10.79140 -10.74139 -10.57991 -10.51271 -10.23669 -10.03003 -9.88539 -9.69943 -9.49722 -9.18404 -8.61179 -8.39466 -8.06890 -6.04621 -4.08097 1.16453 1.97060 2.74662 2.95630 3.29676 3.33776 3.37052 3.40744 3.62499 3.92698 4.06881 4.29103 4.43454 4.44353 4.55167 4.65964 4.66552 4.75896 4.85965 4.95823 4.98345 5.03757 5.12949 5.16246 5.23783 5.30634 5.31795 5.36106 5.44452 5.47300 5.51515 5.54992 5.65592 5.66651 5.75080 5.82044 5.84429 5.85286 6.00703 6.05080 6.09815 6.26358 6.42229 6.60197 6.74640 6.77146 6.93061 7.45301 7.63749 7.80790 7.94728 8.01704 8.30773 8.60372 8.98424 9.56179 11.06687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002565 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.559871 B =10913.904493 C =11631.040439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.210 4.210 4 C -0.019 4.019 5 C 0.119 3.881 6 N -0.513 5.513 7 C 0.053 3.947 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.101 4.101 11 C 0.112 3.888 12 C -0.190 4.190 13 C 0.516 3.484 14 O -0.532 6.532 15 N -0.609 5.609 16 C 0.128 3.872 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.106 3.894 27 O 0.095 5.905 28 N -0.367 5.367 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.018 0.982 48 H 0.021 0.979 49 H 0.261 0.739 50 H 0.074 0.926 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 -17.146 1.288 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.232 4.232 4 C -0.083 4.083 5 C -0.009 4.009 6 N -0.237 5.237 7 C -0.074 4.074 8 C -0.152 4.152 9 C -0.161 4.161 10 C -0.139 4.139 11 C 0.022 3.978 12 C -0.232 4.232 13 C 0.302 3.698 14 O -0.409 6.409 15 N -0.343 5.343 16 C 0.008 3.992 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.018 4.018 27 O 0.029 5.971 28 N -0.073 5.073 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.092 0.908 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.755 -18.086 1.396 25.383 hybrid contribution 0.778 1.384 -0.676 1.726 sum -16.977 -16.702 0.719 23.826 Atomic orbital electron populations 1.20160 0.85989 1.03729 1.03393 1.23629 0.99057 0.88935 1.02940 1.22426 0.90914 1.01204 1.08703 1.24203 0.98056 0.83442 1.02617 1.20824 0.89449 0.98976 0.91611 1.61762 1.32503 1.17703 1.11771 1.22192 1.00836 0.89821 0.94581 1.21575 0.98396 1.00164 0.95095 1.21661 0.97516 0.96266 1.00648 1.21468 1.02849 0.97885 0.91695 1.21324 0.87065 0.92661 0.96788 1.23102 0.99766 0.98832 1.01514 1.20640 0.85428 0.84240 0.79520 1.90717 1.18134 1.83083 1.48931 1.48649 1.15185 1.13010 1.57461 1.21821 0.99240 0.80635 0.97476 1.19399 0.95881 0.93548 0.93711 1.21075 1.38638 0.99877 0.96544 0.92506 1.24992 0.95699 0.98691 0.94845 1.69969 1.41976 1.34744 1.06400 0.86561 0.78106 0.83698 0.79451 1.20624 1.21185 1.19802 1.22179 0.86220 0.97198 0.96171 1.84825 1.21662 1.22960 1.67634 1.73849 0.89324 1.24188 1.19894 0.90170 0.89950 0.90689 0.80935 0.86252 0.91767 0.90680 0.93867 0.90927 0.91422 0.91191 0.91849 0.90107 0.90145 0.87796 0.88311 0.91060 0.91551 0.96383 0.96110 0.92924 0.90828 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.47 36.00 0.38 -0.08 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -1.80 11.06 -39.38 -0.44 -2.23 16 4 C -0.02 -0.18 5.79 -35.30 -0.20 -0.38 16 5 C 0.12 1.00 4.91 -4.97 -0.02 0.97 16 6 N -0.51 -4.67 4.53 -220.36 -1.00 -5.67 16 7 C 0.05 0.46 5.06 -3.76 -0.02 0.44 16 8 C -0.11 -0.95 6.07 -26.64 -0.16 -1.11 16 9 C -0.12 -1.15 5.80 -26.54 -0.15 -1.30 16 10 C -0.10 -1.13 4.75 -27.00 -0.13 -1.26 16 11 C 0.11 1.21 0.60 -131.56 -0.08 1.14 16 12 C -0.19 -2.36 4.58 -27.02 -0.12 -2.48 16 13 C 0.52 9.12 8.04 -10.66 -0.09 9.03 16 14 O -0.53 -11.93 17.61 5.55 0.10 -11.83 16 15 N -0.61 -10.29 2.95 -172.54 -0.51 -10.80 16 16 C 0.13 2.59 5.88 -4.04 -0.02 2.57 16 17 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 18 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.11 1.32 6.37 -3.37 -0.02 1.30 16 27 O 0.10 1.03 10.44 17.18 0.18 1.21 16 28 N -0.37 -4.19 12.07 33.42 0.40 -3.79 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 0.91 5.51 -51.93 -0.29 0.62 16 34 H 0.06 0.53 6.16 -51.93 -0.32 0.21 16 35 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 36 H 0.04 0.38 7.21 -51.93 -0.37 0.00 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 43 H 0.10 1.26 6.24 -51.93 -0.32 0.93 16 44 H 0.10 1.06 5.73 -51.93 -0.30 0.76 16 45 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 46 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.07 0.75 5.25 -51.93 -0.27 0.48 16 51 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -33.62 396.82 -9.36 -42.97 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.98 Total: -1.74 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.24 Total: -6.94 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.37 Total: -46.07 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.28 Total: -10.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.62 -9.36 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273817564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.524 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds